Literature DB >> 32818002

Accurate quantification of modified cyclic peptides without the need for authentic standards.

Rosemary I Adaba1, Greg Mann2, Andrea Raab3, Wael E Houssen1,4,5, Andrew R McEwan1,4, Louise Thomas1,4, Jioji Tabudravu1, James H Naismith2, Marcel Jaspars1.   

Abstract

There is a growing interest in the use of cyclic peptides as therapeutics, but their efficient production is often the bottleneck in taking them forward in the development pipeline. We have recently developed a method to synthesise azole-containing cyclic peptides using enzymes derived from different cyanobactin biosynthetic pathways. Accurate quantification is crucial for calculation of the reaction yield and for the downstream biological testing of the products. In this study, we demonstrate the development and validation of two methods to accurately quantify these compounds in the reaction mixture and after purification. The first method involves the use of a HPLC coupled in parallel to an ESMS and an ICPMS, hence correlating the calculated sulfur content to the amount of cyclic peptide. The second method is an NMR ERETIC method for quantifying the solution concentration of cyclic peptides. These methods make the quantification of new compounds much easier as there is no need for the use of authentic standards when they are not available.

Entities:  

Keywords:  Cyanobacteria; Cyclic peptide; ICP-MS; LC-MS; NMR; Quantification without authentic standards; qNMR

Year:  2016        PMID: 32818002      PMCID: PMC7115945          DOI: 10.1016/j.tet.2016.11.040

Source DB:  PubMed          Journal:  Tetrahedron        ISSN: 0040-4020            Impact factor:   2.457


  62 in total

1.  Shotgun cloning and heterologous expression of the patellamide gene cluster as a strategy to achieving sustained metabolite production.

Authors:  Paul F Long; Walter C Dunlap; Christopher N Battershill; Marcel Jaspars
Journal:  Chembiochem       Date:  2005-10       Impact factor: 3.164

Review 2.  The exploration of macrocycles for drug discovery--an underexploited structural class.

Authors:  Edward M Driggers; Stephen P Hale; Jinbo Lee; Nicholas K Terrett
Journal:  Nat Rev Drug Discov       Date:  2008-07       Impact factor: 84.694

3.  Bioanalysis of the neuropeptide des-enkephalin-gamma-endorphin by high-performance liquid chromatography with on-line sample pretreatment using gel permeation and solid-phase isolation.

Authors:  D S Stegehuis; U R Tjaden; C M van den Beld; J van der Greef
Journal:  J Chromatogr       Date:  1991-07-19

4.  Identification and quantification of arsenolipids using reversed-phase HPLC coupled simultaneously to high-resolution ICPMS and high-resolution electrospray MS without species-specific standards.

Authors:  Kenneth O Amayo; Asta Petursdottir; Chris Newcombe; Helga Gunnlaugsdottir; Andrea Raab; Eva M Krupp; Jörg Feldmann
Journal:  Anal Chem       Date:  2011-04-12       Impact factor: 6.986

5.  Insights into heterocyclization from two highly similar enzymes.

Authors:  John A McIntosh; Mohamed S Donia; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

6.  Dynamic labeling strategy with 204Hg-isotopic methylmercurithiosalicylate for absolute peptide and protein quantification.

Authors:  Ming Xu; Xiaowen Yan; Qingqing Xie; Limin Yang; Qiuquan Wang
Journal:  Anal Chem       Date:  2010-03-01       Impact factor: 6.986

7.  Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.

Authors:  Mohamed S Donia; Brian J Hathaway; Sebastian Sudek; Margo G Haygood; M J Rosovitz; Jacques Ravel; Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2006-11-05       Impact factor: 15.040

8.  Evaluation of the ERETIC method as an improved quantitative reference for 1H HR-MAS spectroscopy of prostate tissue.

Authors:  Mark J Albers; Thomas N Butler; Iman Rahwa; Nguyen Bao; Kayvan R Keshari; Mark G Swanson; John Kurhanewicz
Journal:  Magn Reson Med       Date:  2009-03       Impact factor: 4.668

9.  Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides.

Authors:  Niina Leikoski; Liwei Liu; Jouni Jokela; Matti Wahlsten; Muriel Gugger; Alexandra Calteau; Perttu Permi; Cheryl A Kerfeld; Kaarina Sivonen; David P Fewer
Journal:  Chem Biol       Date:  2013-08-01

10.  Tumor microenvironment in focus: LA-ICP-MS bioimaging of a preclinical tumor model upon treatment with platinum(IV)-based anticancer agents.

Authors:  Sarah Theiner; Christoph Kornauth; Hristo P Varbanov; Markus Galanski; Sushilla Van Schoonhoven; Petra Heffeter; Walter Berger; Alexander E Egger; Bernhard K Keppler
Journal:  Metallomics       Date:  2015-04-09       Impact factor: 4.526

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