Literature DB >> 32788394

When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.

Jasper Verwilt1,2, Wim Trypsteen3,2, Ruben Van Paemel3,2, Katleen De Preter3,2, Maria D Giraldez4,5, Pieter Mestdagh3,2, Jo Vandesompele3,2.   

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Year:  2020        PMID： 32788394      PMCID： PMC7431080          DOI： 10.1073/pnas.2001675117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  3 in total

1.  When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.

Authors:  Jasper Verwilt; Wim Trypsteen; Ruben Van Paemel; Katleen De Preter; Maria D Giraldez; Pieter Mestdagh; Jo Vandesompele
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-11       Impact factor: 11.205

2.  Extracellular RNA in a single droplet of human serum reflects physiologic and disease states.

Authors:  Zixu Zhou; Qiuyang Wu; Zhangming Yan; Haizi Zheng; Chien-Ju Chen; Yuan Liu; Zhijie Qi; Riccardo Calandrelli; Zhen Chen; Shu Chien; H Irene Su; Sheng Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-03       Impact factor: 11.205

3.  Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles.

Authors:  Celine Everaert; Hetty Helsmoortel; Anneleen Decock; Eva Hulstaert; Ruben Van Paemel; Kimberly Verniers; Justine Nuytens; Jasper Anckaert; Nele Nijs; Joeri Tulkens; Bert Dhondt; An Hendrix; Pieter Mestdagh; Jo Vandesompele
Journal:  Sci Rep       Date:  2019-11-26       Impact factor: 4.379
  3 in total
  7 in total

1.  When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.

Authors:  Jasper Verwilt; Wim Trypsteen; Ruben Van Paemel; Katleen De Preter; Maria D Giraldez; Pieter Mestdagh; Jo Vandesompele
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-11       Impact factor: 11.205

2.  Inferring gene expression from cell-free DNA fragmentation profiles.

Authors:  Mohammad Shahrokh Esfahani; Emily G Hamilton; Mahya Mehrmohamadi; Barzin Y Nabet; Stefan K Alig; Daniel A King; Chloé B Steen; Charles W Macaulay; Andre Schultz; Monica C Nesselbush; Joanne Soo; Joseph G Schroers-Martin; Binbin Chen; Michael S Binkley; Henning Stehr; Jacob J Chabon; Brian J Sworder; Angela B-Y Hui; Matthew J Frank; Everett J Moding; Chih Long Liu; Aaron M Newman; James M Isbell; Charles M Rudin; Bob T Li; David M Kurtz; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Biotechnol       Date:  2022-03-31       Impact factor: 68.164

3.  Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls.

Authors:  Eva Hulstaert; Anneleen Decock; Annelien Morlion; Celine Everaert; Kimberly Verniers; Justine Nuytens; Nele Nijs; Gary P Schroth; Scott Kuersten; Stephen M Gross; Pieter Mestdagh; Jo Vandesompele
Journal:  STAR Protoc       Date:  2021-04-14

Review 4.  Investigating Pregnancy and Its Complications Using Circulating Cell-Free RNA in Women's Blood During Gestation.

Authors:  Mira N Moufarrej; Ronald J Wong; Gary M Shaw; David K Stevenson; Stephen R Quake
Journal:  Front Pediatr       Date:  2020-12-14       Impact factor: 3.418

5.  Genes expressed at low levels raise false discovery rates in RNA samples contaminated with genomic DNA.

Authors:  Xiangnan Li; Peipei Zhang; Haijian Wang; Ying Yu
Journal:  BMC Genomics       Date:  2022-08-03       Impact factor: 4.547

Review 6.  Current challenges and best practices for cell-free long RNA biomarker discovery.

Authors:  Lluc Cabús; Julien Lagarde; Joao Curado; Esther Lizano; Jennifer Pérez-Boza
Journal:  Biomark Res       Date:  2022-08-18

Review 7.  Dissecting the transcriptome in cardiovascular disease.

Authors:  Emma L Robinson; Andrew H Baker; Mairi Brittan; Ian McCracken; G Condorelli; C Emanueli; P K Srivastava; C Gaetano; T Thum; M Vanhaverbeke; C Angione; S Heymans; Y Devaux; T Pedrazzini; F Martelli
Journal:  Cardiovasc Res       Date:  2022-03-16       Impact factor: 10.787
  7 in total

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