Literature DB >> 32777389

Advancing Food Allergy Through Omics Sciences.

Haritz Irizar1, Kanika Kanchan2, Rasika A Mathias2, Supinda Bunyavanich3.   

Abstract

Since the publication of the first draft of the human genome, there has been an explosion of new technologies with increasing power to interrogate the totality of biological molecules (eg, DNA, RNA, proteins, metabolites) and their modifications (eg, DNA methylation, histone modifications). These technologies, collectively called omics, have been widely applied in the last 2 decades to study biological systems to gain deeper insight into mechanisms driving the physiology and pathophysiology of human health and disease. Because of its complex, multifactorial nature, food allergy is especially well suited to be investigated using omics approaches. In this rostrum, we review how omic technologies have been applied to explore diverse aspects of food allergy, including adaptive and innate immune processes in food-allergic responses, the role of the microbiome in food allergy risk, metabolic changes in the gut and blood associated with food allergy, and the identification of biomarkers and potential therapeutic targets for the condition. We discuss the strengths and limitations of the studies performed thus far and the need to adopt systems biology approaches that integrate data from multiple omics to fully leverage the potential of these technologies to advance food allergy research and care.
Copyright © 2020 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Food allergy; Omics

Mesh:

Substances:

Year:  2020        PMID: 32777389      PMCID: PMC7855623          DOI: 10.1016/j.jaip.2020.07.044

Source DB:  PubMed          Journal:  J Allergy Clin Immunol Pract


  69 in total

1.  Genomewide association study of peanut allergy reproduces association with amino acid polymorphisms in HLA-DRB1.

Authors:  D J Martino; S Ashley; J Koplin; J Ellis; R Saffery; S C Dharmage; L Gurrin; M C Matheson; B Kalb; I Marenholz; K Beyer; Y-A Lee; X Hong; X Wang; D Vukcevic; A Motyer; S Leslie; K J Allen; M A R Ferreira
Journal:  Clin Exp Allergy       Date:  2017-01-11       Impact factor: 5.018

2.  The Consortium for Food Allergy Research (CoFAR): The first generation.

Authors:  Hugh A Sampson; M Cecilia Berin; Marshall Plaut; Scott H Sicherer; Stacie Jones; A Wesley Burks; Robert Lindblad; Donald Y M Leung; Robert A Wood
Journal:  J Allergy Clin Immunol       Date:  2018-12-23       Impact factor: 10.793

3.  Multi-omics analysis points to altered platelet functions in severe food-associated respiratory allergy.

Authors:  David Obeso; Leticia Mera-Berriatua; Juan Rodríguez-Coira; Domenico Rosace; Paloma Fernández; Isabel Adoración Martín-Antoniano; Marcela Santaolalla; Guadalupe Marco Martín; Tomás Chivato; Montserrat Fernández-Rivas; Tania Ramos; Carlos Blanco; María I Alvarado; Carmen Domínguez; Santiago Angulo; Coral Barbas; Domingo Barber; Alma Villaseñor; María M Escribese
Journal:  Allergy       Date:  2018-08-09       Impact factor: 13.146

4.  HLA class II DRB1, DQB1 and DPB1 genotypic associations with peanut allergy: evidence from a family-based and case-control study.

Authors:  W M Howell; S J Turner; J O Hourihane; T P Dean; J O Warner
Journal:  Clin Exp Allergy       Date:  1998-02       Impact factor: 5.018

5.  Infant gut microbiota is protective against cow's milk allergy in mice despite immature ileal T-cell response.

Authors:  Bertrand Rodriguez; Guenolée Prioult; Feriel Hacini-Rachinel; Deborah Moine; Anne Bruttin; Catherine Ngom-Bru; Chantal Labellie; Ioannis Nicolis; Bernard Berger; Annick Mercenier; Marie-José Butel; Anne-Judith Waligora-Dupriet
Journal:  FEMS Microbiol Ecol       Date:  2012-01       Impact factor: 4.194

6.  Blood DNA methylation biomarkers predict clinical reactivity in food-sensitized infants.

Authors:  David Martino; Thanh Dang; Alexandra Sexton-Oates; Susan Prescott; Mimi L K Tang; Shyamali Dharmage; Lyle Gurrin; Jennifer Koplin; Anne-Louise Ponsonby; Katrina J Allen; Richard Saffery
Journal:  J Allergy Clin Immunol       Date:  2015-02-10       Impact factor: 10.793

7.  Dual transcriptomic and epigenomic study of reaction severity in peanut-allergic children.

Authors:  Anh N Do; Corey T Watson; Ariella T Cohain; Robert S Griffin; Alexander Grishin; Robert A Wood; A Wesley Burks; Stacie M Jones; Amy Scurlock; Donald Y M Leung; Hugh A Sampson; Scott H Sicherer; Andrew J Sharp; Eric E Schadt; Supinda Bunyavanich
Journal:  J Allergy Clin Immunol       Date:  2019-12-12       Impact factor: 10.793

Review 8.  Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences.

Authors:  Claudia Manzoni; Demis A Kia; Jana Vandrovcova; John Hardy; Nicholas W Wood; Patrick A Lewis; Raffaele Ferrari
Journal:  Brief Bioinform       Date:  2018-03-01       Impact factor: 11.622

9.  DNA methylation age of blood predicts future onset of lung cancer in the women's health initiative.

Authors:  Morgan E Levine; H Dean Hosgood; Brian Chen; Devin Absher; Themistocles Assimes; Steve Horvath
Journal:  Aging (Albany NY)       Date:  2015-09       Impact factor: 5.682

10.  Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation.

Authors:  Eric R Gamazon; Ayellet V Segrè; Martijn van de Bunt; Xiaoquan Wen; Hualin S Xi; Farhad Hormozdiari; Halit Ongen; Anuar Konkashbaev; Eske M Derks; François Aguet; Jie Quan; Dan L Nicolae; Eleazar Eskin; Manolis Kellis; Gad Getz; Mark I McCarthy; Emmanouil T Dermitzakis; Nancy J Cox; Kristin G Ardlie
Journal:  Nat Genet       Date:  2018-06-28       Impact factor: 38.330

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  2 in total

Review 1.  Genetics of Food Allergy.

Authors:  Elisabet Johansson; Tesfaye B Mersha
Journal:  Immunol Allergy Clin North Am       Date:  2021-03-26       Impact factor: 3.479

Review 2.  Current insights into the genetics of food allergy.

Authors:  Kanika Kanchan; Selene Clay; Haritz Irizar; Supinda Bunyavanich; Rasika A Mathias
Journal:  J Allergy Clin Immunol       Date:  2021-01-05       Impact factor: 10.793

  2 in total

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