Literature DB >> 32759207

Revealing the origin of multiphasic dynamic behaviors in cyanobacteriochrome.

Dihao Wang1,2, Xiankun Li1,3, Sheng Zhang1, Lijuan Wang1, Xiaojing Yang4, Dongping Zhong5,2,3,6,7.   

Abstract

Cyanobacteriochromes are photoreceptors in cyanobacteria that exhibit a wide spectral coverage and unique photophysical properties from the photoinduced isomerization of a linear tetrapyrrole chromophore. Here, we integrate femtosecond-resolved fluorescence and transient-absorption methods and unambiguously showed the significant solvation dynamics occurring at the active site from a few to hundreds of picoseconds. These motions of local water molecules and polar side chains are continuously convoluted with the isomerization reaction, leading to a nonequilibrium processes with continuous active-site motions. By mutations of critical residues at the active site, the modified local structures become looser, resulting in faster solvation relaxations and isomerization reaction. The observation of solvation dynamics is significant and critical to the correct interpretation of often-observed multiphasic dynamic behaviors, and thus the previously invoked ground-state heterogeneity may not be relevant to the excited-state isomerization reaction.

Entities:  

Keywords:  active-site relaxation; conical intersection; double-bond twisting; femtosecond spectroscopy; site-directed mutation

Mesh:

Substances:

Year:  2020        PMID: 32759207      PMCID: PMC7443970          DOI: 10.1073/pnas.2001114117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

Review 1.  Dynamics of water in biological recognition.

Authors:  Samir Kumar Pal; Ahmed H Zewail
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

2.  Real-time tracking of phytochrome's orientational changes during Pr photoisomerization.

Authors:  Yang Yang; Martin Linke; Theodore von Haimberger; Janina Hahn; Ricardo Matute; Leticia González; Peter Schmieder; Karsten Heyne
Journal:  J Am Chem Soc       Date:  2012-01-13       Impact factor: 15.419

3.  Detailed insight into the ultrafast photoconversion of the cyanobacteriochrome Slr1393 from Synechocystis sp.

Authors:  Chavdar Slavov; Xiuling Xu; Kai-Hong Zhao; Wolfgang Gärtner; Josef Wachtveitl
Journal:  Biochim Biophys Acta       Date:  2015-08-01

Review 4.  The family of phytochrome-like photoreceptors: diverse, complex and multi-colored, but very useful.

Authors:  Katrin Anders; Lars-Oliver Essen
Journal:  Curr Opin Struct Biol       Date:  2015-08-01       Impact factor: 6.809

Review 5.  Responding to color: the regulation of complementary chromatic adaptation.

Authors:  David M Kehoe; Andrian Gutu
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

6.  Structural Determinants of Improved Fluorescence in a Family of Bacteriophytochrome-Based Infrared Fluorescent Proteins: Insights from Continuum Electrostatic Calculations and Molecular Dynamics Simulations.

Authors:  Mikolaj Feliks; Céline Lafaye; Xiaokun Shu; Antoine Royant; Martin Field
Journal:  Biochemistry       Date:  2016-07-29       Impact factor: 3.162

7.  Dynamics and mechanism of ultrafast water-protein interactions.

Authors:  Yangzhong Qin; Lijuan Wang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

8.  NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning.

Authors:  Nathan C Rockwell; Shelley S Martin; Fei Gan; Donald A Bryant; J Clark Lagarias
Journal:  Photochem Photobiol Sci       Date:  2015-02       Impact factor: 3.982

9.  Molecular Origin of Ultrafast Water-Protein Coupled Interactions.

Authors:  Yangzhong Qin; Menghui Jia; Jin Yang; Dihao Wang; Lijuan Wang; Jianhua Xu; Dongping Zhong
Journal:  J Phys Chem Lett       Date:  2016-10-07       Impact factor: 6.475

10.  Cyanobacteriochrome SesA is a diguanylate cyclase that induces cell aggregation in Thermosynechococcus.

Authors:  Gen Enomoto; Ryouhei Nomura; Takashi Shimada; Rei Narikawa; Masahiko Ikeuchi
Journal:  J Biol Chem       Date:  2014-07-24       Impact factor: 5.157

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  3 in total

1.  Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2.

Authors:  Susanne Altmayer; Lisa Köhler; Pavlo Bielytskyi; Wolfgang Gärtner; Jörg Matysik; Christian Wiebeler; Chen Song
Journal:  Photochem Photobiol Sci       Date:  2022-04-08       Impact factor: 3.982

2.  Needles in a haystack: H-bonding in an optogenetic protein observed with isotope labeling and 2D-IR spectroscopy.

Authors:  Jeannette Ruf; Peter Hamm; David Buhrke
Journal:  Phys Chem Chem Phys       Date:  2021-05-05       Impact factor: 3.676

3.  An Engineered Biliverdin-Compatible Cyanobacteriochrome Enables a Unique Ultrafast Reversible Photoswitching Pathway.

Authors:  Sean R Tachibana; Longteng Tang; Liangdong Zhu; Yuka Takeda; Keiji Fushimi; Yoshibumi Ueda; Takahiro Nakajima; Yuto Kuwasaki; Moritoshi Sato; Rei Narikawa; Chong Fang
Journal:  Int J Mol Sci       Date:  2021-05-16       Impact factor: 5.923

  3 in total

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