Literature DB >> 26239412

Detailed insight into the ultrafast photoconversion of the cyanobacteriochrome Slr1393 from Synechocystis sp.

Chavdar Slavov1, Xiuling Xu2, Kai-Hong Zhao3, Wolfgang Gärtner4, Josef Wachtveitl5.   

Abstract

The initial light-induced processes of the photochromic, phycocyanobilin-binding GAF domain of Slr1393 from Synechocystis sp. PCC6803 have been studied by ultrafast transient absorption spectroscopy. We use lifetime density analysis as a model-independent method for the evolution of the experimental data, which gives a comprehensive overview of the excitation wavelength dependence of the photoconversion kinetics. The method is particularly suitable for this highly complex and not purely exponential kinetics. In contrast to previously studied cyanobacteriochromes (CBCRs), here both the red- and the green-absorbing forms show significantly slower reaction dynamics, which proceed also via ground state intermediates. The photoconversion of the green-absorbing form is faster than that of the red state, which allowed a clear detection of the primary photoproduct Lumi-G. Strong coherent oscillations of the recorded transient absorption due to wavepacket motion on the excited state potential energy surface were observed and analyzed for both (red and green) forms of Slr1393g3. The vibrational modes responsible for the coherent oscillations could play a role in the dynamics of the initially heterogeneous excited state (ES) population and direct the system towards the minima on the potential energy surface that determine the ES decay pathway. Furthermore, the coherent oscillations appear to be a common feature of bilin-based photoreceptors and thus deserve further attention. The investigated CBCR exhibits an extraordinary high level of heterogeneity due to the remarkable flexibility of the phycocyanobilin and the protein binding pocket. These properties should allow spectrally tuned response to the light stimuli and thus have significant biological implications.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cyanobacteriochrome; Lifetime density analysis; Photoisomerization; Photoreceptors; Transient absorption; Ultrafast spectroscopy

Year:  2015        PMID: 26239412     DOI: 10.1016/j.bbabio.2015.07.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  13 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Elucidating the Molecular Mechanism of Ultrafast Pfr-State Photoisomerization in Bathy Bacteriophytochrome PaBphP.

Authors:  Dihao Wang; Yangzhong Qin; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  J Phys Chem Lett       Date:  2019-10-02       Impact factor: 6.475

3.  Light- and pH-dependent structural changes in cyanobacteriochrome AnPixJg2.

Authors:  Susanne Altmayer; Lisa Köhler; Pavlo Bielytskyi; Wolfgang Gärtner; Jörg Matysik; Christian Wiebeler; Chen Song
Journal:  Photochem Photobiol Sci       Date:  2022-04-08       Impact factor: 3.982

Review 4.  The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters.

Authors:  Kun Tang; Hannes M Beyer; Matias D Zurbriggen; Wolfgang Gärtner
Journal:  Chem Rev       Date:  2021-10-20       Impact factor: 72.087

5.  Revealing the origin of multiphasic dynamic behaviors in cyanobacteriochrome.

Authors:  Dihao Wang; Xiankun Li; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-05       Impact factor: 11.205

Review 6.  Frontiers in Multiscale Modeling of Photoreceptor Proteins.

Authors:  Maria-Andrea Mroginski; Suliman Adam; Gil S Amoyal; Avishai Barnoy; Ana-Nicoleta Bondar; Veniamin A Borin; Jonathan R Church; Tatiana Domratcheva; Bernd Ensing; Francesca Fanelli; Nicolas Ferré; Ofer Filiba; Laura Pedraza-González; Ronald González; Cristina E González-Espinoza; Rajiv K Kar; Lukas Kemmler; Seung Soo Kim; Jacob Kongsted; Anna I Krylov; Yigal Lahav; Michalis Lazaratos; Qays NasserEddin; Isabelle Navizet; Alexander Nemukhin; Massimo Olivucci; Jógvan Magnus Haugaard Olsen; Alberto Pérez de Alba Ortíz; Elisa Pieri; Aditya G Rao; Young Min Rhee; Niccolò Ricardi; Saumik Sen; Ilia A Solov'yov; Luca De Vico; Tomasz A Wesolowski; Christian Wiebeler; Xuchun Yang; Igor Schapiro
Journal:  Photochem Photobiol       Date:  2021-02-13       Impact factor: 3.521

7.  Photoconversion and Fluorescence Properties of a Red/Green-Type Cyanobacteriochrome AM1_C0023g2 That Binds Not Only Phycocyanobilin But Also Biliverdin.

Authors:  Keiji Fushimi; Takahiro Nakajima; Yuki Aono; Tatsuro Yamamoto; Masahiko Ikeuchi; Moritoshi Sato; Rei Narikawa
Journal:  Front Microbiol       Date:  2016-04-26       Impact factor: 5.640

Review 8.  Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes.

Authors:  Olena S Oliinyk; Konstantin G Chernov; Vladislav V Verkhusha
Journal:  Int J Mol Sci       Date:  2017-08-03       Impact factor: 5.923

9.  QM/MM Benchmarking of Cyanobacteriochrome Slr1393g3 Absorption Spectra.

Authors:  Christian Wiebeler; Igor Schapiro
Journal:  Molecules       Date:  2019-05-03       Impact factor: 4.411

10.  Structural elements regulating the photochromicity in a cyanobacteriochrome.

Authors:  Xiuling Xu; Astrid Port; Christian Wiebeler; Kai-Hong Zhao; Igor Schapiro; Wolfgang Gärtner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

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