Literature DB >> 11062553

Analyzing protein functions in four dimensions.

J Hajdu1, R Neutze, T Sjögren, K Edman, A Szöke, R C Wilmouth, C M Wilmot.   

Abstract

Time-resolved structural studies on biomolecular function are coming of age. Focus has shifted from studies on 'systems of opportunities' to a more problem-oriented approach, addressing significant questions in biology and chemistry. An important step in this direction has been the use of physical and chemical trapping methods to capture and then freeze reaction intermediates in crystals. Subsequent monochromatic data collection at cryogenic temperatures can produce high resolution structures of otherwise elusive intermediates. The combination of diffraction methods with spectroscopic techniques provides a means to directly correlate electronic transitions with structural transitions in the sample, eliminating much of the guesswork from experiments. Studies on cytochrome P450, isopenicillin N synthase, cytochrome cd1 nitrite reductase, copper amine oxidase and bacteriorhodopsin were selected as examples, and the results are discussed.

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Year:  2000        PMID: 11062553     DOI: 10.1038/80911

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  19 in total

1.  The 2-A postdoc.

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3.  A newly designed microspectrofluorometer for kinetic studies on protein crystals in combination with x-ray diffraction.

Authors:  Björn U Klink; Roger S Goody; Axel J Scheidig
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Review 4.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

5.  Ectopic suicide inhibition of thioredoxin glutathione reductase.

Authors:  Ilaria Silvestri; Haining Lyu; Francesca Fata; Paul R Banta; Benedetta Mattei; Rodolfo Ippoliti; Andrea Bellelli; Giuseppina Pitari; Matteo Ardini; Valentina Petukhova; Gregory R J Thatcher; Pavel A Petukhov; David L Williams; Francesco Angelucci
Journal:  Free Radic Biol Med       Date:  2019-12-20       Impact factor: 7.376

6.  Conformational Stability and Dynamics in Crystals Recapitulate Protein Behavior in Solution.

Authors:  Benedetta Maria Sala; Tanguy Le Marchand; Guido Pintacuda; Carlo Camilloni; Antonino Natalello; Stefano Ricagno
Journal:  Biophys J       Date:  2020-07-24       Impact factor: 4.033

7.  Intermediate in the O-O bond cleavage reaction of an extradiol dioxygenase.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

8.  Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.

Authors:  Sebastian Westenhoff; Elena Nazarenko; Erik Malmerberg; Jan Davidsson; Gergely Katona; Richard Neutze
Journal:  Acta Crystallogr A       Date:  2010-02-18       Impact factor: 2.290

Review 9.  Correlated single-crystal electronic absorption spectroscopy and X-ray crystallography at NSLS beamline X26-C.

Authors:  Allen M Orville; Richard Buono; Matt Cowan; Annie Héroux; Grace Shea-McCarthy; Dieter K Schneider; John M Skinner; Michael J Skinner; Deborah Stoner-Ma; Robert M Sweet
Journal:  J Synchrotron Radiat       Date:  2011-03-19       Impact factor: 2.616

10.  Structural snapshots illustrate the catalytic cycle of β-galactocerebrosidase, the defective enzyme in Krabbe disease.

Authors:  Chris H Hill; Stephen C Graham; Randy J Read; Janet E Deane
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

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