Literature DB >> 32747765

Application of exome sequencing for prenatal diagnosis: a rapid scoping review.

Misty Pratt1, Chantelle Garritty2, Micere Thuku2, Leila Esmaeilisaraji2, Candyce Hamel2, Taila Hartley3, Kathryn Millar4, Becky Skidmore5, Shelley Dougan4, Christine M Armour3,4,6.   

Abstract

Genetic diagnosis provides important information for prenatal decision-making and management. Promising results from exome sequencing (ES) for genetic diagnosis in fetuses with structural anomalies are emerging. The objective of this scoping review was to identify what is known about the use of ES for genetic testing in prenatal cases with known or suspected genetic disease. A rapid scoping review was conducted over a six-week timeframe of English-language peer-reviewed studies. Search strategies for major databases (e.g., Medline) and gray literature were developed, and peer reviewed by information specialists. Identified studies were categorized and charted using tables and diagrams. Twenty-four publications were included from seven countries published between 2014 and 2019. Most commonly reported outcomes were diagnostic yields, which varied widely from 5% to 57%, and prenatal phenotype. Few studies reported clinical outcomes related to impact, decision-making, and clinical utility. Qualitative studies (n = 6) provided useful insights into patient and health-care provider experiences with ES. Findings suggest prenatal ES is beneficial, but more research is needed to better understand the clinical utility, circumstances for ideal use, feasibility, and costs of offering rapid ES as a routine option for prenatal genetic testing.

Entities:  

Keywords:  congenital anomalies; exome sequencing; prenatal genetic diagnosis; scoping review; systematic review

Mesh:

Year:  2020        PMID: 32747765     DOI: 10.1038/s41436-020-0918-y

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  38 in total

1.  Maternal Overweight and Obesity and Risk of Congenital Heart Defects.

Authors:  Martina Persson; Neda Razaz; Anna-Karin Edstedt Bonamy; Eduardo Villamor; Sven Cnattingius
Journal:  J Am Coll Cardiol       Date:  2019-01-08       Impact factor: 24.094

2.  Introduction of genomics into prenatal diagnostics.

Authors:  Michael E Talkowski; Heidi L Rehm
Journal:  Lancet       Date:  2019-01-31       Impact factor: 79.321

3.  Whole-exome sequencing in the evaluation of fetal structural anomalies: a prospective cohort study.

Authors:  Slavé Petrovski; Vimla Aggarwal; Jessica L Giordano; Melissa Stosic; Karen Wou; Louise Bier; Erica Spiegel; Kelly Brennan; Nicholas Stong; Vaidehi Jobanputra; Zhong Ren; Xiaolin Zhu; Caroline Mebane; Odelia Nahum; Quanli Wang; Sitharthan Kamalakaran; Colin Malone; Kwame Anyane-Yeboa; Russell Miller; Brynn Levy; David B Goldstein; Ronald J Wapner
Journal:  Lancet       Date:  2019-01-31       Impact factor: 79.321

4.  Fetal exome sequencing: yield and limitations in a tertiary referral center.

Authors:  H Daum; V Meiner; O Elpeleg; T Harel
Journal:  Ultrasound Obstet Gynecol       Date:  2019-01       Impact factor: 7.299

5.  PRESS Peer Review of Electronic Search Strategies: 2015 Guideline Statement.

Authors:  Jessie McGowan; Margaret Sampson; Douglas M Salzwedel; Elise Cogo; Vicki Foerster; Carol Lefebvre
Journal:  J Clin Epidemiol       Date:  2016-03-19       Impact factor: 6.437

6.  Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015 statement.

Authors:  David Moher; Larissa Shamseer; Mike Clarke; Davina Ghersi; Alessandro Liberati; Mark Petticrew; Paul Shekelle; Lesley A Stewart
Journal:  Syst Rev       Date:  2015-01-01

7.  Clinical exome sequencing for fetuses with ultrasound abnormalities and a suspected Mendelian disorder.

Authors:  Elizabeth A Normand; Alicia Braxton; Salma Nassef; Patricia A Ward; Francesco Vetrini; Weimin He; Vipulkumar Patel; Chunjing Qu; Lauren E Westerfield; Samantha Stover; Avinash V Dharmadhikari; Donna M Muzny; Richard A Gibbs; Hongzheng Dai; Linyan Meng; Xia Wang; Rui Xiao; Pengfei Liu; Weimin Bi; Fan Xia; Magdalena Walkiewicz; Ignatia B Van den Veyver; Christine M Eng; Yaping Yang
Journal:  Genome Med       Date:  2018-09-28       Impact factor: 11.117

8.  Prenatal exome sequencing analysis in fetal structural anomalies detected by ultrasonography (PAGE): a cohort study.

Authors:  Jenny Lord; Dominic J McMullan; Ruth Y Eberhardt; Gabriele Rinck; Susan J Hamilton; Elizabeth Quinlan-Jones; Elena Prigmore; Rebecca Keelagher; Sunayna K Best; Georgina K Carey; Rhiannon Mellis; Sarah Robart; Ian R Berry; Kate E Chandler; Deirdre Cilliers; Lara Cresswell; Sandra L Edwards; Carol Gardiner; Alex Henderson; Simon T Holden; Tessa Homfray; Tracy Lester; Rebecca A Lewis; Ruth Newbury-Ecob; Katrina Prescott; Oliver W Quarrell; Simon C Ramsden; Eileen Roberts; Dagmar Tapon; Madeleine J Tooley; Pradeep C Vasudevan; Astrid P Weber; Diana G Wellesley; Paul Westwood; Helen White; Michael Parker; Denise Williams; Lucy Jenkins; Richard H Scott; Mark D Kilby; Lyn S Chitty; Matthew E Hurles; Eamonn R Maher
Journal:  Lancet       Date:  2019-01-31       Impact factor: 202.731

9.  Genomic study of severe fetal anomalies and discovery of GREB1L mutations in renal agenesis.

Authors:  Sarah Boissel; Catherine Fallet-Bianco; David Chitayat; Valérie Kremer; Christina Nassif; Françoise Rypens; Marie-Ange Delrue; Dorothée Dal Soglio; Luc L Oligny; Natalie Patey; Elisabeth Flori; Mireille Cloutier; David Dyment; Philippe Campeau; Aspasia Karalis; Sonia Nizard; William D Fraser; François Audibert; Emmanuelle Lemyre; Guy A Rouleau; Fadi F Hamdan; Zoha Kibar; Jacques L Michaud
Journal:  Genet Med       Date:  2017-10-26       Impact factor: 8.822

10.  Evidence summaries: the evolution of a rapid review approach.

Authors:  Sara Khangura; Kristin Konnyu; Rob Cushman; Jeremy Grimshaw; David Moher
Journal:  Syst Rev       Date:  2012-02-10
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  8 in total

1.  Same performance of exome sequencing before and after fetal autopsy for congenital abnormalities: toward a paradigm shift in prenatal diagnosis?

Authors:  Nicolas Bourgon; Aurore Garde; Ange-Line Bruel; Mathilde Lefebvre; Frederic Tran Mau-Them; Sebastien Moutton; Arthur Sorlin; Sophie Nambot; Julian Delanne; Martin Chevarin; Charlotte Pöe; Julien Thevenon; Daphné Lehalle; Nolween Jean-Marçais; Paul Kuentz; Laetitia Lambert; Salima El Chehadeh; Elise Schaefer; Marjolaine Willems; Fanny Laffargue; Christine Francannet; Mélanie Fradin; Dominique Gaillard; Sophie Blesson; Alice Goldenberg; Yline Capri; Paul Sagot; Thierry Rousseau; Emmanuel Simon; Christine Binquet; Marie-Laure Ascencio; Yannis Duffourd; Christophe Philippe; Laurence Faivre; Antonio Vitobello; Christel Thauvin-Robinet
Journal:  Eur J Hum Genet       Date:  2022-05-16       Impact factor: 5.351

2.  The Fetus with Ganglionic Eminence Abnormality: Head Size and Extracranial Sonographic Findings Predict Genetic Diagnoses and Postnatal Outcomes.

Authors:  S K Goergen; E Alibrahim; J Christie; A Dobrotwir; M Fahey; L Fender; K Frawley; S A Manikkam; J R Pinner; S Sinnott; R Romaniello; S A Sandaradura; J Taylor; A Vasudevan; A Righini
Journal:  AJNR Am J Neuroradiol       Date:  2021-05-06       Impact factor: 4.966

3.  Parental experiences of rapid exome sequencing in cases with major ultrasound anomalies during pregnancy.

Authors:  Mirjam Plantinga; Lauren Zwienenberg; Eva van Dijk; Hanna Breet; Janouk Diphoorn; Julia El Mecky; Katelijne Bouman; Joke Verheij; Erwin Birnie; Adelita V Ranchor; Nicole Corsten-Janssen; Irene M van Langen
Journal:  Prenat Diagn       Date:  2021-10-22       Impact factor: 3.242

4.  Clinical efficiency of simultaneous CNV-seq and whole-exome sequencing for testing fetal structural anomalies.

Authors:  Xinlin Chen; Yulin Jiang; Ruiguo Chen; Qingwei Qi; Xiujuan Zhang; Sheng Zhao; Chaoshi Liu; Weiyun Wang; Yuezhen Li; Guoqiang Sun; Jieping Song; Hui Huang; Chen Cheng; Jianguang Zhang; Longxian Cheng; Juntao Liu
Journal:  J Transl Med       Date:  2022-01-03       Impact factor: 5.531

5.  Diagnostic yield of exome sequencing for prenatal diagnosis of fetal structural anomalies: A systematic review and meta-analysis.

Authors:  Rhiannon Mellis; Kathryn Oprych; Elizabeth Scotchman; Melissa Hill; Lyn S Chitty
Journal:  Prenat Diagn       Date:  2022-05-07       Impact factor: 3.242

6.  Clinical application of fetal genome-wide sequencing during pregnancy: position statement of the Canadian College of Medical Geneticists.

Authors:  Kym Boycott; Christine M Armour; Joanna Lazier; Taila Hartley; Jo-Ann Brock; Oana Caluseriu; David Chitayat; Anne-Marie Laberge; Sylvie Langlois; Julie Lauzon; Tanya N Nelson; Jillian Parboosingh; Dimitri J Stavropoulos
Journal:  J Med Genet       Date:  2021-09-20       Impact factor: 5.941

7.  Toward the diagnosis of rare childhood genetic diseases: what do parents value most?

Authors:  Samantha Pollard; Deirdre Weymann; Jessica Dunne; Fatemeh Mayanloo; John Buckell; James Buchanan; Sarah Wordsworth; Jan M Friedman; Sylvia Stockler-Ipsiroglu; Nick Dragojlovic; Alison M Elliott; Mark Harrison; Larry D Lynd; Dean A Regier
Journal:  Eur J Hum Genet       Date:  2021-04-26       Impact factor: 4.246

8.  In Vitro Fertilization Using Preimplantation Genetic Testing in a Romanian Couple Carrier of Mutations in the TTN Gene: A Case Report and Literature Review.

Authors:  Bogdan Doroftei; Radu Maftei; Ovidiu-Dumitru Ilie; Theodora Armeanu; Maria Puiu; Iuliu Ivanov; Loredana Nemtanu
Journal:  Diagnostics (Basel)       Date:  2021-12-10
  8 in total

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