Literature DB >> 32734669

An Engineered Escherichia coli Strain with Synthetic Metabolism for in-Cell Production of Translationally Active Methionine Derivatives.

Christian Johannes Schipp1, Ying Ma2, Ammar Al-Shameri3, Federico D'Alessio4, Peter Neubauer1, Roberto Contestabile4, Nediljko Budisa3,5, Martino Luigi di Salvo4.   

Abstract

In the last decades, it has become clear that the canonical amino acid repertoire codified by the universal genetic code is not up to the needs of emerging biotechnologies. For this reason, extensive genetic code re-engineering is essential to expand the scope of ribosomal protein translation, leading to reprogrammed microbial cells equipped with an alternative biochemical alphabet to be exploited as potential factories for biotechnological purposes. The prerequisite for this to happen is a continuous intracellular supply of noncanonical amino acids through synthetic metabolism from simple and cheap precursors. We have engineered an Escherichia coli bacterial system that fulfills these requirements through reconfiguration of the methionine biosynthetic pathway and the introduction of an exogenous direct trans-sulfuration pathway. Our metabolic scheme operates in vivo, rescuing intermediates from core cell metabolism and combining them with small bio-orthogonal compounds. Our reprogrammed E. coli strain is capable of the in-cell production of l-azidohomoalanine, which is directly incorporated into proteins in response to methionine codons. We thereby constructed a prototype suitable for economic, versatile, green sustainable chemistry, pushing towards enzyme chemistry and biotechnology-based production.
© 2020 The Authors. Published by Wiley-VCH GmbH.

Entities:  

Keywords:  click chemistry; genetic code expansion; green chemistry; metabolic engineering; noncanonical amino acids; trans-sulfuration.

Mesh:

Substances:

Year:  2020        PMID: 32734669      PMCID: PMC7756864          DOI: 10.1002/cbic.202000257

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  62 in total

1.  A stepwise huisgen cycloaddition process: copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynes.

Authors:  Vsevolod V Rostovtsev; Luke G Green; Valery V Fokin; K Barry Sharpless
Journal:  Angew Chem Int Ed Engl       Date:  2002-07-15       Impact factor: 15.336

Review 2.  Fine tuning the N-terminal residue excision with methionine analogues.

Authors:  Birgit Wiltschi; Lars Merkel; Nediljko Budisa
Journal:  Chembiochem       Date:  2009-01-26       Impact factor: 3.164

3.  Selective functionalization of a genetically encoded alkene-containing protein via "photoclick chemistry" in bacterial cells.

Authors:  Wenjiao Song; Yizhong Wang; Jun Qu; Qing Lin
Journal:  J Am Chem Soc       Date:  2008-07-02       Impact factor: 15.419

4.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

5.  Development of a novel method for quantification of autophagic protein degradation by AHA labeling.

Authors:  Jianbin Zhang; Jigang Wang; Shukie Ng; Qingsong Lin; Han-Ming Shen
Journal:  Autophagy       Date:  2014-03-24       Impact factor: 16.016

6.  The proteomics of N-terminal methionine cleavage.

Authors:  Frédéric Frottin; Aude Martinez; Philippe Peynot; Sanghamitra Mitra; Richard C Holz; Carmela Giglione; Thierry Meinnel
Journal:  Mol Cell Proteomics       Date:  2006-09-08       Impact factor: 5.911

7.  Peptidotriazoles on solid phase: [1,2,3]-triazoles by regiospecific copper(i)-catalyzed 1,3-dipolar cycloadditions of terminal alkynes to azides.

Authors:  Christian W Tornøe; Caspar Christensen; Morten Meldal
Journal:  J Org Chem       Date:  2002-05-03       Impact factor: 4.354

8.  A convergent approach to biocompatible polyglycerol "click" dendrons for the synthesis of modular core-shell architectures and their transport behavior.

Authors:  Monika Wyszogrodzka; Rainer Haag
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

9.  Incorporation of non-canonical amino acids into the developing murine proteome.

Authors:  Sarah Calve; Andrew J Witten; Alexander R Ocken; Tamara L Kinzer-Ursem
Journal:  Sci Rep       Date:  2016-08-30       Impact factor: 4.379

10.  Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis.

Authors:  Katherine F Steward; Brian Eilers; Brian Tripet; Amanda Fuchs; Michael Dorle; Rachel Rawle; Berliza Soriano; Narayanaganesh Balasubramanian; Valérie Copié; Brian Bothner; Roland Hatzenpichler
Journal:  Front Microbiol       Date:  2020-02-13       Impact factor: 5.640

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  4 in total

Review 1.  Rebooting life: engineering non-natural nucleic acids, proteins and metabolites in microorganisms.

Authors:  Shriya Hans; Nilesh Kumar; Nisarg Gohil; Khushal Khambhati; Gargi Bhattacharjee; Shalini S Deb; Rupesh Maurya; Vinod Kumar; Shamlan M S Reshamwala; Vijai Singh
Journal:  Microb Cell Fact       Date:  2022-05-28       Impact factor: 6.352

2.  Non-Canonical Amino Acid-Based Engineering of (R)-Amine Transaminase.

Authors:  Amol D Pagar; Hyunwoo Jeon; Taresh P Khobragade; Sharad Sarak; Pritam Giri; Seonga Lim; Tae Hyeon Yoo; Byoung Joon Ko; Hyungdon Yun
Journal:  Front Chem       Date:  2022-02-28       Impact factor: 5.221

3.  An Engineered Escherichia coli Strain with Synthetic Metabolism for in-Cell Production of Translationally Active Methionine Derivatives.

Authors:  Christian Johannes Schipp; Ying Ma; Ammar Al-Shameri; Federico D'Alessio; Peter Neubauer; Roberto Contestabile; Nediljko Budisa; Martino Luigi di Salvo
Journal:  Chembiochem       Date:  2020-10-13       Impact factor: 3.164

4.  Convenient Genetic Encoding of Phenylalanine Derivatives through Their α-Keto Acid Precursors.

Authors:  Li Liu; Bohao Wang; Sheng Li; Fengyuan Xu; Qi He; Chun Pan; Xiangdong Gao; Wenbing Yao; Xiaoda Song
Journal:  Biomolecules       Date:  2021-09-14
  4 in total

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