| Literature DB >> 32734161 |
Marliese Alexander1,2, Benjamin Solomon2,3, David L Ball2,4, Mimi Sheerin5, Irene Dankwa-Mullan5, Anita M Preininger5, Gretchen Purcell Jackson5, Dishan M Herath3.
Abstract
OBJECTIVE: The objective of this technical study was to evaluate the performance of an artificial intelligence (AI)-based system for clinical trials matching for a cohort of lung cancer patients in an Australian cancer hospital.Entities:
Keywords: clinical trial matching; machine learning; natural language processing
Year: 2020 PMID: 32734161 PMCID: PMC7382632 DOI: 10.1093/jamiaopen/ooaa002
Source DB: PubMed Journal: JAMIA Open ISSN: 2574-2531
Selected patient attributes entered in CTM
| Demographics | No. | % |
|---|---|---|
| Age, median (range) | 69 (26–91) | |
| Sex, male | 57 | 56 |
| Race | ||
| Caucasian | 40 | 39 |
| Asian | 11 | 11 |
| Other | 2 | 2 |
| Not stateda | 49 | 48 |
| Cancer staging | ||
| Metastatic at diagnosis | 42 | 41 |
| Metastatic at screening | 46 | 45 |
| Measurable disease | ||
| Yes | 36 | 35 |
| No | 36 | 35 |
| Unknown/requires assessment | 30 | 29 |
| Histology and mutation | ||
| NSCLC, non-squamous | 71 | 78 |
| NSCLC, squamous | 20 | 28 |
| SCLC | 4 | 4 |
| Neuroendocrine | 2 | 2 |
| No histologic diagnosis | 5 | 5 |
| Mutation positive | ||
| EGFR | 21 | 21 |
| ALK | 11 | 11 |
| KRAS | 5 | 5 |
| BRAF | 2 | 2 |
| ROS1 | 0 | 0 |
| PDL1 expression known and >1% | 10 | 10% |
| Prior cancer treatment | ||
| Any chemotherapy | 57 | 56 |
| Neoadjuvant or adjuvant chemotherapy | 9 | 9 |
| Metastatic chemotherapy | 30 | 29 |
| Platinum chemotherapy | 30 | 29 |
| Biologic/targeted therapy | 26 | 25 |
| Immunotherapy | 20 | 20 |
| Any radiotherapy | 82 | 80 |
| Any lung surgery | 22 | 22 |
| Other | ||
| ECOG performance status, 0–1 | 71 | 70 |
| ECOG performance status, ≥2 | 28 | 27 |
| ECOG unknown | 4 | 2 |
| History prior malignancy | 22 | 22 |
| Current smoker | 12 | 12 |
a Note: Attributes presented as entered into CTM with all field accurately representing data from the prospective clinical database expect for race which was available for all patients, however, only entered in CTM for a portion of patients due to data entry omission.
Abbreviations: ALK: anaplastic lymphoma kinase; BRAF: proto-oncogene B-Raf; CTM: clinical trial matching; ECOG: Eastern Cooperative Oncology Group; EGFR: epidermal growth factor receptor; KRAS: Kirsten rat sarcoma viral oncogene homolog; NSCLC: non-small cell lung cancer; PDL1: programmed death ligand 1; ROS1: ROS proto-oncogene 1; SCLC: small cell lung cancer.
Figure 1.Clinical trial setting, intervention, and phase. Summary of patient attributes and clinical trial features.
Clinician and CTM agreement with gold standard for overall trial eligibility status
| Trial ID | Number of criteria assessed | Clinician interrater agreement for establishing gold standard | % patients listed for trial consideration | CTM and gold standard | |||
|---|---|---|---|---|---|---|---|
| Agreement (%) | Kappa | Std. Err | CTM (%) | Gold standard (%) | Agreement (%) | ||
| 1 | 270 | 100 | 1.000 | 0.099 | 1 | 2 | 99 |
| 2 | 560 | 97 | 0.872 | 0.098 | 1 | 1 | 92 |
| 3 | 243 | 100 | NR | NR | 0 | 0 | 100 |
| 4 | 1010 | 99 | 0.967 | 0.099 | 23 | 18 | 93 |
| 5 | 313 | 98 | 0.823 | 0.099 | 3 | 6 | 97 |
| 6 | 4132 | 99 | 0.980 | 0.099 | 59 | 40 | 77 |
| 7 | 634 | 97 | 0.919 | 0.099 | 11 | 25 | 78 |
| 8 | 486 | 100 | 1.000 | 0.099 | 8 | 5 | 97 |
| 9 | 1795 | 100 | 1.000 | 0.099 | 49 | 48 | 93 |
| 10 | 2024 | 85 | 0.703 | 0.096 | 53 | 46 | 89 |
Abbreviations: CTM: clinical trial matching; NR: not reported; Std. Err: standard error.
CTM assessment of individual trial inclusion and exclusion criteria
| Trial ID | Median (range), per pt | Total | Agreement | Median (range), per pt | Total | Agreement | Median (range), per pt | Total | Agreement | Median (range), per pt | Total | Agreement | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | No. | % | No. | % | |||||||||
| Not met inclusion criteria | Not met exclusion criteria | Met inclusion criteria | Met exclusion criteria | |||||||||||||
| 1 | 2 (0–4) | 236 | 233 | 99 | 0 (0–2) | 4 | 3 | 75 | 4 (4–4) | 4 | 4 | 100 | 2 (2–2) | 2 | 2 | 100 |
| 2 | 1 (0–4) | 143 | 138 | 97 | 0 | 0 | 0 | – | 5 (3–8) | 58 | 58 | 100 | 0 | 0 | 0 | – |
| 3 | 3 (1–4) | 243 | 237 | 98 | 0 | 0 | 0 | – | 0 | 0 | 0 | – | 0 | 0 | 0 | – |
| 4 | 1 (0–4) | 130 | 126 | 97 | 0 | 0 | 0 | – | 5 (3–6) | 105 | 104 | 99 | 5 (1–7) | 106 | 105 | 99 |
| 5 | 1 (0–3) | 135 | 124 | 92 | 0 | 0 | 0 | – | 7 (4–9) | 27 | 27 | 100 | 1 (0–1) | 2 | 2 | 100 |
| 6 | 1 (0–2) | 79 | 65 | 82 | 0 (0–2) | 28 | 28 | 100 | 5 (2–6) | 229 | 218 | 95 | 3 (0–7) | 138 | 106 | 77 |
| 7 | 1 (0–3) | 93 | 63 | 68 | 0 (0–1) | 18 | 1 | 6 | 5 (3–7) | 68 | 68 | 100 | 2 (0–4) | 26 | 26 | 100 |
| 8 | 2 (0–5) | 253 | 198 | 78 | 0 | 0 | 0 | – | 5 (5–6) | 32 | 31 | 97 | 1 (1–1) | 6 | 6 | 100 |
| 9 | 1 (0–2) | 56 | 56 | 106 | 0 | 0 | 0 | – | 3 (1–5) | 124 | 124 | 100 | 0 | 0 | 0 | – |
| 10 | 0 (0–3) | 72 | 68 | 94 | 0 | 0 | 0 | – | 5 (2–8) | 253 | 251 | 99 | 1 (0–2) | 51 | 49 | 96 |
| All trials | 1440 | 1308 | 91 | 50 | 32 | 64 | 900 | 900 | 885 | 331 | 296 | 89 | ||||
| Action needed inclusion criteria | Action needed exclusion criteria | Unmet modifiable condition | Consent criteria | |||||||||||||
| 1 | 8 (8–8) | 8 | 7 | 88 | 13 (13–13) | 13 | 11 | 85 | 0 | 0 | 0 | – | 3 (3–3) | 3 | 2 | 67 |
| 2 | 7 (5–10) | 82 | 75 | 91 | 23 (22–23) | 250 | 232 | 93 | 1 (0–1) | 7 | 7 | 100 | 2 (1–2) | 20 | 12 | 60 |
| 3 | 0 | 0 | 0 | – | 0 | 0 | 0 | – | 0 | 0 | 0 | – | 0 | 0 | 0 | – |
| 4 | 2 (1–3) | 47 | 43 | 91 | 23 (22–29) | 531 | 484 | 91 | 0 (0–1) | 3 | 3 | 100 | 4 (4–4) | 88 | 68 | 77 |
| 5 | 16 (15/17) | 63 | 56 | 89 | 18 (17–18) | 70 | 65 | 93 | 2 (2–4) | 10 | 2 | 20 | 2 (1–2) | 6 | 6 | 100 |
| 6 | 18 (13–19) | 874 | 750 | 86 | 52 (29–54) | 2567 | 2258 | 88 | 1 (0–5) | 70 | 66 | 94 | 3 (2–3) | 147 | 92 | 63 |
| 7 | 7 (6–11) | 98 | 83 | 85 | 21 (19–22) | 268 | 245 | 91 | 0 (0–3) | 12 | 12 | 100 | 4 (3–4) | 51 | 38 | 75 |
| 8 | 22 (20–22) | 129 | 110 | 85 | 8 (7–8) | 46 | 43 | 93 | 0 (0–1) | 2 | 1 | 50 | 3 (3–3) | 18 | 17 | 94 |
| 9 | 16 (14–17) | 754 | 674 | 89 | 15 (15–15) | 705 | 701 | 99 | 0 (0–2) | 18 | 18 | 100 | 3 (3–3) | 138 | 137 | 99 |
| 10 | 17 (9–21) | 859 | 731 | 85 | 15 (13–16) | 724 | 652 | 90 | 0 (0–3) | 14 | 14 | 100 | 1 (1–2) | 51 | 49 | 96 |
| All trials | 2914 | 2529 | 87 | 5174 | 4691 | 91 | 136 | 123 | 90 | 522 | 421 | 81 | ||||
Note: Not met criteria assessed for all trials; met, action needed, modifiable, and consent criteria assessed only for CTM eligible trials. All patients classified not eligible for trial 3.
Abbreviations: CTM: clinical trial matching; pt: patient.
CTM misclassifications
| Misclassification category | Misclassifications detail | Number of misclassifications per trial | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | All | ||
| Stage | Failure to detect metastatic disease status for patient with non-metastatic primary staging but metastatic disease at screening | 0 | 3 | 0 | 1 | 1 | 3 | 0 | 1 | 3 | 2 | 14 |
| Failure to detect disease stage as not advanced/metastatic | 0 | 0 | 0 | 2 | 0 | 4 | 3 | 0 | 2 | 6 | 17 | |
| Failure to detect absence of measurable disease | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | |
| Detection of metastatic disease but failure to recognize as exclusion | 0 | 0 | 0 | 0 | 0 | 13 | 0 | 0 | 0 | 0 | 13 | |
| Diagnosis | Failure to recognize mutation status as exclusion criteria | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
| Failure to recognize histology as exclusion criteria | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | |
| Treatment | Failure to consider prior therapy as part of exclusion criteria | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 2 | 0 | 5 |
| Failure to consider timing of prior therapy as part of exclusion criteria | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | |
| Failure to consider location of prior radiotherapy as part of exclusion criteria | 0 | 0 | 0 | 0 | 0 | 0 | 18 | 0 | 0 | 0 | 18 | |
| Pathology | Failure to apply correct logic relating to LFT in context of liver metastasis | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| Other | Exclusion rules for sub-cohorts applied to overall study | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| Failure to recognize absence of progressive/recurrent disease | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 3 | |
Abbreviations: CTM: clinical trial matching; LFT: liver function tests.