Literature DB >> 23920677

Automatic identification of comparative effectiveness research from medline citations to support clinicians' treatment information needs.

Mingyuan Zhang1, Guilherme Del Fiol, Randall W Grout, Siddhartha Jonnalagadda, Richard Medlin, Rashmi Mishra, Charlene Weir, Hongfang Liu, Javed Mostafa, Marcelo Fiszman.   

Abstract

UNLABELLED: Online knowledge resources such as Medline can address most clinicians' patient care information needs. Yet, significant barriers, notably lack of time, limit the use of these sources at the point of care. The most common information needs raised by clinicians are treatment-related. Comparative effectiveness studies allow clinicians to consider multiple treatment alternatives for a particular problem. Still, solutions are needed to enable efficient and effective consumption of comparative effectiveness research at the point of care.
OBJECTIVE: Design and assess an algorithm for automatically identifying comparative effectiveness studies and extracting the interventions investigated in these studies.
METHODS: The algorithm combines semantic natural language processing, Medline citation metadata, and machine learning techniques. We assessed the algorithm in a case study of treatment alternatives for depression.
RESULTS: Both precision and recall for identifying comparative studies was 0.83. A total of 86% of the interventions extracted perfectly or partially matched the gold standard.
CONCLUSION: Overall, the algorithm achieved reasonable performance. The method provides building blocks for the automatic summarization of comparative effectiveness research to inform point of care decision-making.

Entities:  

Mesh:

Year:  2013        PMID: 23920677      PMCID: PMC3940695     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  7 in total

1.  A taxonomy of generic clinical questions: classification study.

Authors:  J W Ely; J A Osheroff; P N Gorman; M H Ebell; M L Chambliss; E A Pifer; P Z Stavri
Journal:  BMJ       Date:  2000-08-12

2.  MEDLINE as a source of just-in-time answers to clinical questions.

Authors:  Dina Demner-Fushman; Susan E Hauser; Susanne M Humphrey; Glenn M Ford; Joshua L Jacobs; George R Thoma
Journal:  AMIA Annu Symp Proc       Date:  2006

3.  Semantic clustering of answers to clinical questions.

Authors:  Jimmy Lin; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  Towards identifying intervention arms in randomized controlled trials: extracting coordinating constructions.

Authors:  Grace Yuet-Chee Chung
Journal:  J Biomed Inform       Date:  2009-01-04       Impact factor: 6.317

Review 5.  Comparative effectiveness research: Relevance and applications to pharmacy.

Authors:  Glen T Schumock; A Simon Pickard
Journal:  Am J Health Syst Pharm       Date:  2009-07-15       Impact factor: 2.637

6.  Automatically extracting sentences from Medline citations to support clinicians' information needs.

Authors:  Siddhartha Reddy Jonnalagadda; Guilherme Del Fiol; Richard Medlin; Charlene Weir; Marcelo Fiszman; Javed Mostafa; Hongfang Liu
Journal:  J Am Med Inform Assoc       Date:  2012-10-25       Impact factor: 4.497

7.  SemMedDB: a PubMed-scale repository of biomedical semantic predications.

Authors:  Halil Kilicoglu; Dongwook Shin; Marcelo Fiszman; Graciela Rosemblat; Thomas C Rindflesch
Journal:  Bioinformatics       Date:  2012-10-08       Impact factor: 6.937

  7 in total
  3 in total

1.  Formative evaluation of a patient-specific clinical knowledge summarization tool.

Authors:  Guilherme Del Fiol; Javed Mostafa; Dongqiuye Pu; Richard Medlin; Stacey Slager; Siddhartha R Jonnalagadda; Charlene R Weir
Journal:  Int J Med Inform       Date:  2015-11-21       Impact factor: 4.046

2.  Artificial Intelligence Clinical Evidence Engine for Automatic Identification, Prioritization, and Extraction of Relevant Clinical Oncology Research.

Authors:  Fernando Suarez Saiz; Corey Sanders; Rick Stevens; Robert Nielsen; Michael Britt; Leemor Yuravlivker; Anita M Preininger; Gretchen P Jackson
Journal:  JCO Clin Cancer Inform       Date:  2021-01

3.  Evaluation of an artificial intelligence clinical trial matching system in Australian lung cancer patients.

Authors:  Marliese Alexander; Benjamin Solomon; David L Ball; Mimi Sheerin; Irene Dankwa-Mullan; Anita M Preininger; Gretchen Purcell Jackson; Dishan M Herath
Journal:  JAMIA Open       Date:  2020-05-01
  3 in total

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