Qin Yang1,2, Ning Jiang1, Cheng-Ming Tian2. 1. Forestry Biotechnology Hunan Key Laboratories, Central South University of Forestry and Technology, Changsha 410004, China Beijing Forestry University Beijing China. 2. The Key Laboratory for Silviculture and Conservation of the Ministry of Education, Beijing Forestry University, Beijing 100083, China Central South University of Forestry and Technology Changsha China.
Abstract
Species of Gnomoniaceae are commonly associated with leaf spot diseases of a wide range of plant hosts worldwide. During our investigation of fungi associated with tree diseases in China, several gnomoniaceous isolates were recovered from symptomatic branches and leaves on different woody plants in the Fagaceae, Pinaceae, and Salicaceae families. These isolates were studied by applying a polyphasic approach including morphological, cultural data, and phylogenetic analyses of partial ITS, LSU, tef1, rpb2 and tub2 gene sequences. As a result, three species were identified with characters fitting into the family Gnomoniaceae. One of these species is described herein as Cryphognomonia pini gen. et sp. nov., characterized by developed pseudostromata and ascospores with obvious hyaline sheath; Gnomoniopsis xunwuensis sp. nov. is illustrated showing sympodially branched conidiophore, oval or fusiform conidia; and one known species, Plagiostoma populinum. The current study improves the understanding of gnomoniaceous species causing diebacks and leaf spot on ecological and economic forest trees. Qin Yang, Ning Jiang, Cheng-Ming Tian.
Species of Gnomoniaceae are commonly associated with leaf spot diseases of a wide range of plant hosts worldwide. During our investigation of fungi associated with tree diseases in China, several gnomoniaceous isolates were recovered from symptomatic branches and leaves on different woody plants in the Fagaceae, Pinaceae, and Salicaceae families. These isolates were studied by applying a polyphasic approach including morphological, cultural data, and phylogenetic analyses of partial ITS, LSU, tef1, rpb2 and tub2 gene sequences. As a result, three species were identified with characters fitting into the family Gnomoniaceae. One of these species is described herein as Cryphognomonia pini gen. et sp. nov., characterized by developed pseudostromata and ascospores with obvious hyaline sheath; Gnomoniopsis xunwuensis sp. nov. is illustrated showing sympodially branched conidiophore, oval or fusiform conidia; and one known species, Plagiostoma populinum. The current study improves the understanding of gnomoniaceous species causing diebacks and leaf spot on ecological and economic forest trees. Qin Yang, Ning Jiang, Cheng-Ming Tian.
Entities:
Keywords:
Gnomoniaceae ; forest trees; new genus; phylogeny; systematics
The (, , ) is a family of perithecial ascomycetes that occur as endophytes, pathogens, or saprobes on growing and overwintered leaves of hardwood trees, shrubs, and herbaceous plants (Walker 2012). Many species in the cause serious tree diseases such as cherry leaf scorch ( (Pers.) Höhn.), oak dieback ( (Roberge) Höhn), sycamore canker ( (Sacc. & Speg.) Höhn), and chestnut dieback ( Tian & Jiang) (Sogonov et al. 2008; Walker et al. 2010; Jiang et al. 2019).The sexual morph of is characterized by ascomata that are generally immersed, solitary or aggregated in an undeveloped stroma (Rossman et al. 2007; Sogonov et al. 2008). The perithecia are dark brown to black and pseudoparenchymatous with central, eccentric, or lateral necks (Rossman et al. 2007; Sogonov et al. 2008). Asci usually have an inconspicuous or distinct apical ring. Ascospores are generally small, hyaline, uniseptate. The asexual morph is characterized by acervular or pycnidial, phialidic, with non-septate conidia (Monod 1983).The generic concepts of were recently revised based on a survey of leaf-inhabiting diaporthalean fungi (Sogonov et al. 2008). Phylogenetic analyses of molecular markers is the primary methodology for systematic studies of the , however, host specificity and morphology can also be useful for species identification. Recent phylogenetic studies have shown that species of often have a narrow host range associating with a single host genus or species (Mejía et al. 2008, 2011a, b, 2012; Sogonov et al. 2008; Walker et al. 2010, 2012, 2013). For example, is a well-defined genus which was frequently limited to a single host species, especially in the host family , except for on spp. and type species on spp. (Mejía et al. 2008, 2011b).Several fungal species of , from , from , and from , have been reported from China (Fan et al. 2016; Gong et al. 2017; Jiang and Tian 2019; Jiang et al. 2019). In the present study, tree inhabiting gnomoniaceous species, mainly on cankered branches and leaves, were surveyed in China. The aim of the present study was to identify these fungi via morphology and multi-locus phylogeny based on modern taxonomic concepts.
Materials and methods
Isolates
Fresh specimens of -related fungi were collected from branches and leaves of hosts in Beijing, Jiangxi and Shaanxi provinces (Tables 1–3). Isolates from host material were obtained by removing a mucoid spores mass from perithecia and pycnidia-like conidiomata, spreading the suspension on the surface of 1.8% potato dextrose agar (PDA), and incubating at 25 °C for up to 24 h. Single germinating conidia/ascospore was removed and plated on to fresh PDA plates. Specimens are deposited in the Museum of the Beijing Forestry University (). Axenic cultures are maintained in the China Forestry Culture Collection Centre ().
Table 1.
Strains and GenBank accession numbers used in the phylogenetic analyses of
Species
Strains
Genbank accession number
ITS
LSU
tef1
rpb2
Alneciumauctum
CBS 124263
KF570154
KF570154
KF570200
KF570170
Ambarignomoniapetiolorum
CBS 116866
EU199193
AY818963
NA
EU199151
CBS 121227
EU254748
EU255070
EU221898
EU219307
Amphiporthetiliae
CBS 119289
EU199178
EU199122
NA
EU199137
Anisogrammaanomala
529478
EU683064
EU683066
NA
NA
Anisogrammavirgultorum
529479
EU683062
EU683065
NA
NA
Apiognomoniaerrabunda
AR 2813
DQ313525
NG027592
DQ313565
DQ862014
Apiognomoniaveneta
MFLUCC 16-1193
MF190114
MF190056
NA
NA
Apioplagiostomapopuli
858501
KP637024
NA
NA
NA
Asteromaalneum
CBS 109840
EU167609
EU167609
NA
NA
Asteroma sp.
Masuya 8Ah9-1
NA
AB669035
NA
NA
Cryphognomoniapini
CFCC 53020
MK432672
MK429915
MK578144
MK578100
CFCC 53021
MK432673
MK429916
MK578145
MK578101
Cryptosporellahypodermia
CBS 116866
EU199181
AF408346
NA
EU199140
Disculadestructiva
MD 254
AF429741
AF429721
AF429732
NA
Ditopellabiseptata
MFLU 15-2661
MF190147
MF190091
NA
MF377616
Ditopelladitopa
CBS 109748
DQ323526
EU199126
NA
EU199145
Ditopellopsis sp.
CBS 121471
EU254763
EU255088
EU221936
EU219254
Flavignomoniarhoigena
CFCC 53118
MK432674
MK429917
NA
MK578102
CFCC 53119
MK432675
MK429918
NA
MK578103
CFCC 53120
MK432676
MK429919
NA
MK578104
Gnomoniagnomon
CBS 199.53
DQ491518
AF408361
EU221885
EU219295
CBS 829.79
AY818957
AY818964
EU221905
NA
Gnomoniopsisalderdunensis
CBS 125680
GU320825
NA
NA
NA
Gnomoniopsischamaemori
CBS 803.79
EU254808
EU255107
NA
NA
Gnomoniopsisracemula
AR 3892
EU254841
EU255122
EU221889
EU219241
Mamianiellacoryli
BPI 877578
EU254862
NA
NA
NA
Marsupiomycesquercina
MFLUCC 13-0664
MF190116
MF190061
NA
NA
Marsupiomycesepidermoidea
MFLU 15-2921
NA
MF190058
NA
NA
Melanconismarginalis
CBS 109744
EU199197
AF408373
EU221991
EU219301
Neognomoniopsisquercina
CBS 145575
MK876399
MK876440
NA
NA
Occultocarponailaoshanense
LCM 524.01
JF779849
JF779853
NA
JF779856
LCM 522.01
JF779848
JF779852
JF779862
JF779857
Ophiognomoniamelanostyla
LCM 389.01
JF779850
JF779854
NA
JF779858
Ophiognomoniavasiljevae
AR 4298
EU254977
EU255162
EU221999
EU219331
Plagiostomaaesculi
AR 3640
EU254994
EU255164
NA
EU219269
Linosporacapreae
CBS 372.69
NA
AF277143
NA
NA
Pleurocerasoregonense
AR 4333
EU255060
EU255196
EU221931
EU219313
Pleuroceraspleurostylum
CBS 906.79
EU255061
EU255197
EU221962
EU219311
Phragmoportheconformis
AR 3632
NA
AF408377
NA
NA
Valsalnicolaoxystoma
AR 5137
JX519561
NA
NA
NA
AR 4833
JX519559
JX519563
NA
NA
Sirococcustsugae
AR 4010
EF512478
EU255207
EU221928
EU219289
CBS 119626
EU199203
EU199136
EF512534
EU199159
Tenuignomoniastyracis
BPI 89278
NA
LC379288
LC379282
LC379294
Note: NA, not applicable. Strains in this study are marked in bold.
Table 3.
Strains and GenBank accession numbers used in the phylogenetic analyses of .
Species
Strain
Genbank accession number
ITS
tef1
tub2
Apiognomoniaerrabunda
AR 4182
DQ313543
KJ509937
KJ509947
Plagiostomaaceris-palmati
CBS 137265
KJ509959
KJ509938
KJ509949
Plagiostomaaesculi
CBS 121905
EU254994
GU367022
GU354005
Plagiostomaamygdalinae
CBS 791.79
EU254995
GU367030
GU354012
Plagiostomaapiculatum
CBS 109775
DQ323529
GU367008
GU353990
CBS 126126
GU367066
GU367009
GU353991
Plagiostomabarriae
LCM 601.01
GU367054
GU366997
GU353980
LCM 484.01
GU367053
GU366995
GU353979
Plagiostomaconvexum
CBS 123206
EU255047
EU219112
GU353994
Plagiostomadevexum
CBS 123201
EU255001
GU367027
GU354010
Plagiostomadilatatum
LCM 403.02
GU367069
GU367012
GU353995
CBS 124976
GU367070
GU367014
GU353996
Plagiostomaeuphorbiaceum
CBS 816.79
EU255003
EU219158
GU354013
Plagiostomaeuphorbiae
CBS 340.78
DQ323532
GU367034
GU354016
CBS 817.79
KJ509960
GU367028
KJ509950
Plagiostomaexstocollum
CBS 127662
GU367046
GU366988
GU353972
LCM 422.01
GU367043
GU366989
GU353969
Plagiostomafraxini
CBS 121258
EU255008
KJ509939
KJ509951
CBS 109498
AY455810
GU367033
GU354015
Plagiostomageranii
CBS 824.79
EU255009
GU367032
GU354014
Plagiostomaimperceptibile
LCM 456.01
GU367059
GU367002
GU353984
Plagiostomajonesii
MFLUCC 16–1189
MF190159
NA
MF377589
Plagiostomamejianum
CBS 137266
KJ509961
KJ509940
KJ509952
Plagiostomaoregonense
CBS 126124
GU367073
GU367016
GU353999
Plagiostomaovalisporum
CBS 124977
GU367072
GU367015
GU353998
Plagiostomapetiolophilum
AR 3821
EU255039
GU367025
GU354008
CBS 126123
GU367078
GU367023
GU354006
Plagiostomapopulinum
CFCC 53016
MK432677
MK578070
MK578146
CFCC 53017
MK432678
MK578071
MK578147
Plagiostomapopulinum
CBS 174.58
GU367074
GU367017
GU354000
CBS 144.57
GU367075
GU367018
GU354001
Plagiostomapulchellum
CBS 170.69
EU255043
KJ509941
GU353989
CBS 126653
GU367063
GU367006
GU353987
Plagiostomarhododendri
CBS 847.79
EU255044
GU367026
GU354009
Plagiostomarobergeanum
CBS 121472
EU255046
GU367029
GU354011
Plagiostomarubrosporum
CBS 137267
KJ509962
KJ509942
KJ509953
Plagiostomasalicellum
CBS 126121
GU367037
GU366977
GU353961
CBS 121466
EU254996
GU366978
GU353962
Plagiostomasalicicola
MFLUCC 13–0656
MF190161
NA
NA
Plagiostomasamuelsii
CBS 125668
GU367051
GU366993
GU353977
LCM 596.01
GU367052
GU366994
GU353978
Plagiostomatriseptatum
CBS 137268
KJ509963
KJ509943
KJ509954
Plagiostomatsukubense
CBS 137269
KJ509964
KJ509944
KJ509955
CBS 137270
KJ509965
KJ509945
KJ509956
Plagiostomaversatile
CBS 124978
GU367038
GU366979
GU393963
LCM 598.01
GU367040
GU366981
GU393965
Plagiostomayunnanense
LCM 513.02
GU367036
GU366976
GU353960
CBS 124979
GU367035
GU366975
GU353959
Note: NA, not applicable. Strains in this study are marked in bold.
Morphological analysis
Morphological observations of the asexual/sexual morph in the natural environment were based on features of the conidiomata or ascomata on infected plant tissues and micromorphology, supplemented by cultural characteristics. Ascomata and conidiomata from tree barks were sectioned by hand, using a double-edged blade and structures were observed under a dissecting microscope. The gross morphology of conidiomata or ascomata was recorded using a Leica stereomicroscope (M205 FA). Fungal structures were mounted in clear lactic acid and micromorphological characteristics were examined using a Leica compound microscope (DM 2500) with differential interference contrast (DIC) optics. Thirty measurements of each structure were determined for each collection. Colony characters and pigment production on PDA were noted after 10 d. Colony colors were described according to Rayner (1970).
DNA extraction, PCR amplification and sequencing
Total genomic DNA was extracted from fresh mycelium grown on PDA using a cetyltrimethylammonium bromide (CTAB) method (Doyle and Doyle 1990). PCR amplifications were performed in a DNA Engine Peltier Thermal Cycler (PTC-200; Bio-Rad Laboratories, Hercules, CA, USA). The primer sets ITS1 and ITS4 (White et al. 1990) were used to amplify the ITS region. The primer sets LR0R and LR7 (Vilgalys and Hester 1990; Vilgalys and Sun 1994) were used to amplify the nuclear ribosomal large subunit (LSU) region. The primer sets EF1-728F (Carbone and Kohn 1999) and EF1-1567R (Rehner 2001) were used to amplify a partial fragment of the translation elongation factor 1-α gene (tef1-α). The primer sets RPB2-5F and fRPB2-7cR (Liu et al. 1999) were used to amplify the partial RNA polymerase II subunit (rpb2) region. The primer sets T1 (O’Donnell and Cigelnik 1997) and Bt2b (Glass and Donaldson 1995) were used to amplify the beta-tubulin gene (tub2). The PCR conditions were: an initial denaturation step of 5 min at 94 °C followed by 35 cycles of 30 sec at 94 °C, 50 sec at 48 °C (ITS, LSU) or 54 °C (tef-1α) or 55 °C (, ) and 1 min at 72 °C, and a final elongation step of 7 min at 72 °C. PCR amplification products were assayed via electrophoresis in 2% agarose gels. DNA sequencing was performed using an ABI PRISM 3730XL DNA Analyser with a BigDye Terminater Kit v.3.1 (Inv-itrogen, USA) at the Shanghai Invitrogen Biological Technology Company Limited (Beijing, China).
Phylogenetic analyses
The quality of our amplified nucleotide sequences was checked and combined by SeqMan v.7.1.0 and reference sequences were retrieved from the National Center for Biotechnology Information (NCBI), based on Mejía et al. (2011a), Senanayake et al. (2018), Jiang and Tian (2019), and Jiang et al. (2019), supplemented by sequences of and from Crous et al. (2019) and Minoshima et al. (2019). Sequences were aligned using MAFFT v. 6 (Katoh and Toh 2010) and manually corrected using Bioedit 7.0.9.0 (Hall 1999).The phylogenetical analyses were conducted using Maximum Parsimony (MP), Maximum Likelihood (ML) and Bayesian inference (BI). MP was performed with PAUP v. 4.0b10 (Swofford 2003) using tree-bisection-reconnection (TBR) as the branch-swapping algorithm. Other calculated parsimony scores were tree length (TL), consistency index (CI), retention index (RI), and rescaled consistency (RC). ML was performed with RAxML (Stamatakis 2006) as implemented in raxmlGUI 1.3 (Silvestro and Michalak 2012), using the ML + rapid bootstrap setting and the GTRGAMMA substitution model with 1000 bootstrap replicates. BI was performed using a Markov Chain Monte Carlo (MCMC) algorithm in MrBayes v. 3.0b4 (Ronquist and Huelsenbeck 2003). Two MCMC chains, started from random trees for 1,000,000 generations and trees, were sampled every 100th generation, resulting in a total of 10,000 trees. The first 25% of trees were discarded as burn-in of each analysis. Branches with significant Bayesian Posterior Probabilities (BPP) were estimated in the remaining 7500 trees. Phylogenetic trees were viewed with FigTree v.1.4.3 (Rambaut 2016) and processed by Adobe Illustrator CS5. Alignment and trees were deposited in TreeBASE (submission ID: S26271). The nucleotide sequence data of the new taxa have been deposited in GenBank (Tables 1–3).
Results
The first sequences dataset for the ITS, LSU, tef1, and was analyzed to focus on . The alignment included 45 taxa, including the outgroup sequences of (Table 1). The aligned four-locus datasets included 3388 characters. Of these, 2180 characters were constant, 198 variable characters were par-simony-uninformative and 1010 characters were parsimony informative. The heuristic search using maximum parsimony (MP) generated 4 parsimonious trees (TL = 3241, CI = 0.539, RI = 0.672, RC = 0.362), from which one was selected (Fig. 1). In the phylogenetic tree, two strains form a well-supported clade (MP/ML/BI=100/100/1) sister to the species from .
Figure 1.
Maximum parsimony phylogram of based on a combined matrix of ITS, LSU, tef1 and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 80 nucleotide substitutions. Strains in this study are in blue and ex-type strains are in blod.
Maximum parsimony phylogram of based on a combined matrix of ITS, LSU, tef1 and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 80 nucleotide substitutions. Strains in this study are in blue and ex-type strains are in blod.Strains and GenBank accession numbers used in the phylogenetic analyses ofNote: NA, not applicable. Strains in this study are marked in bold.The second dataset with ITS, tef1 and sequences were analyzed in combination to infer the interspecific relationships within . The alignment included 36 taxa, including the outgroup sequences of and (Table 2). The aligned three-locus datasets included 2481 characters. Of these, 1443 characters were constant, 186 variable characters were par-simony-uninformative and 852 characters were parsimony informative. The heuristic search using maximum parsimony (MP) generated one parsimonious tree (TL = 2644, CI = 0.620, RI = 0.781, RC = 0.485), which is shown in Fig. 2. In the phylogenetic tree, three strains form a well-supported clade (MP/ML/BI=100/100/1) that does not include any previously described species.
Table 2.
Strains and GenBank accession numbers used in the phylogenetic analyses of
Species
Strain
Genbank accession number
ITS
tef1
tub2
Apiognomoniaveneta
CBS 342.86
DQ313531
DQ318036
EU219235
Gnomoniopsisalderdunensis
CBS 125679
GU320826
GU320813
GU320788
CBS 125680
GU320825
GU320801
GU320787
CBS 125681
GU320827
GU320802
GU320789
Gnomoniopsischamaemori
CBS 804.79
GU320817
GU320809
GU320777
Gnomoniopsischinensis
CFCC 52286
MG866032
MH545370
MH545366
CFCC 52287
MG866033
MH545371
MH545367
CFCC 52288
MG866034
MH545372
MH545368
CFCC 52289
MG866035
MH545373
MH545369
Gnomoniopsisclavulata
CBS 121255
EU254818
GU320807
EU219211
Gnomoniopsiscomari
CBS 806.79
EU254821
GU320810
EU219156
CBS 807.79
EU254822
GU320814
GU320779
CBS 809.79
EU254823
GU320794
GU320778
Gnomoniopsisdaii
CFCC 54043
MN598671
MN605519
MN605517
CMF002B
MN598672
MN605520
MN605518
Gnomoniopsisfructicola
CBS 121226
EU254824
GU320792
EU219144
CBS 208.34
EU254826
GU320808
EU219149
CBS 125671
GU320816
GU320793
GU320776
Gnomoniopsisguttulata
MS 0312
EU254812
NA
NA
Gnomoniopsisidaeicola
CBS 125672
GU320823
GU320797
GU320781
CBS 125673
GU320824
GU320798
GU320782
CBS 125674
GU320820
GU320796
GU320780
CBS 125675
GU320822
GU320799
GU320783
CBS 125676
GU320821
GU320811
GU320784
Gnomoniopsismacounii
CBS 121468
EU254762
GU320804
EU219126
Gnomoniopsisocculta
CBS 125677
GU320828
GU320812
GU320785
CBS 125678
GU320829
GU320800
GU320786
Gnomoniopsisparaclavulata
CBS 123202
GU320830
GU320815
GU320775
Gnomoniopsisracemula
CBS 121469
EU254841
GU320803
EU219125
Gnomoniopsissanguisorbae
CBS 858.79
GU320818
GU320805
GU320790
Gnomoniopsissmithogilvyi
CBS 130190
JQ910642
KR072534
JQ910639
CBS 130189
JQ910644
KR072535
JQ910641
CBS 130188
JQ910643
KR072536
JQ910640
MUT 401
HM142946
KR072537
KR072532
MUT 411
HM142948
KR072538
KR072533
Gnomoniopsistormentillae
CBS 904.79
EU254856
GU320795
EU219165
Gnomoniopsisxunwuensis
CFCC 53115
MK432667
MK578067
MK578141
CFCC 53116
MK432668
MK578068
MK578142
CFCC 53117
MK432669
MK578069
MK578143
Plagiostomaeuphorbiae
CBS 340.78
DQ323532
GU354016
GU367034
Note: NA, not applicable. Strains in this study are marked in bold.
Figure 2.
Maximum parsimony phylogram of based on a combined matrix of ITS, tef1-α and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 80 nucleotide substitutions. Strains in this study are in blue and ex-type strains are in blod.
Maximum parsimony phylogram of based on a combined matrix of ITS, tef1-α and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 80 nucleotide substitutions. Strains in this study are in blue and ex-type strains are in blod.Strains and GenBank accession numbers used in the phylogenetic analyses ofNote: NA, not applicable. Strains in this study are marked in bold.The third dataset with ITS, tef1 and sequences were analyzed in combination to infer the interspecific relationships within . The alignment included 48 taxa, including the outgroup sequences of (Table 3). The aligned three-locus datasets included 2311 characters. Of these, 1556 characters were constant, 204 variable characters were parsimony-uninformative and 551 characters were parsimony informative. The heuristic search using maximum parsimony (MP) generated 6 parsimonious trees (TL = 1462, CI = 0.685, RI = 0.779, RC = 0.534), from which one was selected (Fig. 3). In the phylogenetic tree, four strains from this study group in a well-supported clade with . The topologies resulting from MP, ML and BI analyses of the concatenated dataset were congruent.
Figure 3.
Maximum parsimony phylogram of based on a combined matrix of ITS, tef1-α and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 30 nucleotide substitutions. Strains in this study are in blue.
Maximum parsimony phylogram of based on a combined matrix of ITS, tef1-α and genes. The MP and ML bootstrap support values above 50% are shown at the first and second position, respectively. Thickened branches represent posterior probabilities above 0.90 from BI. Scale bar: 30 nucleotide substitutions. Strains in this study are in blue.Strains and GenBank accession numbers used in the phylogenetic analyses of .Note: NA, not applicable. Strains in this study are marked in bold.
Taxonomy
C.M. Tian & N. Jiang
gen. nov.C9CCE66F-0558-5DBF-BB0E-433C484F1A90829509
Etymology.
Crypho + gnomonia, referring to the cryptic stromata on hosts.
Type species.
C.M. Tian & N. Jiang
Description.
erumpent, causing a pustulate bark surface. yellowish to brownish. lacking. conspicuous, flask-shaped to spherical, umber to fuscous black, regularly scattered. deliquescent. fusoid, 8-spored, biseriate, with an apical ring. hyaline, clavate to cylindrical, smooth, multi-guttulate, symmetrical to asymmetrical, straight to slightly curved, bicellular, with a median septum distinctly constricted, with distinct hyaline sheath. : not observed.
Notes.
was classified as a new genus in throughout molecular data and the characteristics of sexual morph. Morphologically, can be distinguished from the other genera by pseudostromata and ascospores with obvious hyaline sheath.C.M. Tian & N. Jiang
sp. nov.DDB2516A-8F2F-5985-8344-22CAEA479CB2829510Figure 4
Figure 4.
on (BJFC-S1725) A–C habit of ascomata on twigs D, E transverse section of ascomata F longitudinal section through ascomata G asci H, I ascospores. Scale bars: 2 mm (A); 500 μm (B–F); 10 μm (G–I).
Diagnosis.
differs from its closest phylogenetic neighbor, , in ITS, LSU, tef1 and loci based on the alignments deposited in TreeBASE.Named after the genus of the host plant from which the holotype was collected, .erumpent, causing a pustulate bark surface, 650–1200 µm diam., containing up to 12 perithecia. yellowish to brownish. lacking. Perithecia conspicuous, flask-shaped to spherical, umber to fuscous black, regularly scattered, 350–600 µm diam. deliquescent. fusoid, 8-spored, biseriate, with an apical ring, (60–)65–80(–90) × (21–)22–31(–35) µm. hyaline, clavate to cylindrical, smooth, multi-guttulate, symmetrical to asymmetrical, straight to slightly curved, bicellular, with a median septum distinctly constricted, with distinct hyaline sheath, (15.5–)18–25(–27) × (8.5–)9.5–11.5(–12) µm. : not observed.
Culture characters.
Cultures incubated on PDA at 25 °C in the dark, initially pale white, becoming olive-green after 3 wk. The colonies are flat, with regular margins; texture initially uniform, becoming compact after 1 month.
Specimens examined.
China. Shaanxi Province: Ankang City, Huoditang forest farm, , on branches of , 8 June 2018, N. Jiang & C.M. Tian (holotype BJFC-S1725; ex-type living culture: CFCC 53020); , on branches of , 8 June 2018, N. Jiang & C.M. Tian (BJFC-S1726; living culture: CFCC 53021).is the type species of , and occurs on in China. Morphologically, is characterized based on bicellular ascospores with obvious hyaline sheath. In the phylogenetic tree, this species is most closely related to (Fig. 1). However, can be distinguished from based on ITS, LSU, tef1 and loci (73/512 in ITS, 4/775 in LSU, 186/437 in tef1 and 90/1064 in ).on (BJFC-S1725) A–C habit of ascomata on twigs D, E transverse section of ascomata F longitudinal section through ascomata G asci H, I ascospores. Scale bars: 2 mm (A); 500 μm (B–F); 10 μm (G–I).C.M. Tian & Q. Yang
sp. nov.C1F2771E-F584-598A-B96A-C7DF66F49514829529Figure 5
Figure 5.
on (BJFC-S1688) A symptoms on leaves of host plant B the colony on PDAC conidiomata on PDAD, E conidiophores attached with condia F conidia. Scale bars: 500 μm (C); 20 μm (D–F).
differs from its closest phylogenetic neighbor, , in ITS, tef1 and loci based on the alignments deposited in TreeBASE.Named after the County (Xunwu), where the species was first collected.on (BJFC-S1688) A symptoms on leaves of host plant B the colony on PDAC conidiomata on PDAD, E conidiophores attached with condia F conidia. Scale bars: 500 μm (C); 20 μm (D–F).On PDA: pycnidial, (115–)130–210(–250) μm diam., globose, solitary to gregarious, or occasionally coalescing, deeply embedded in the medium, erumpent, brown to dark black. White to cream conidial drops exuding from the ostioles. (40–)43–58(–60.5) × 2–2.5(–3) μm, cylindrical, hyaline, phiailidic, branched or sympodially branched, straight or slightly curved. oval or fusiform, straight to slightly curved, hyaline, multiguttules, (14–)16.5–20 × 4–5.5 µm.Cultures incubated on PDA at 25 °C in the dark. Colony originally compact and flat with white aerial mycelium, then developing pale brown aerial mycelium at the center and blackish green mycelium at the marginal area, zonate with 2 well defined zones with regular edge; conidiomata dense, regularly distributed over agar surface.China. Jiangxi Province: Ganzhou City, Xunwu County, , on leaves of , 12 May 2018, Q. Yang, Y. Liu & Y.M. Liang (holotype BJFC-S1688; ex-type living culture: CFCC 53115); , on leaves of , 12 May 2018, Q. Yang, Y. Liu & Y.M. Liang (BJFC-S1689; living culture: CFCC 53116 and CFCC 53117).is associated with leaf spot of , representing the first report from this host in China. It is characterized by sympodially branched conidiophore and oval or fusiform conidia. Morphologically, differs from in having bigger conidia (16.5–20 × 4–5.5 vs. 5.5–7 × 2–3.5 µm) (Jiang and Tian 2019). The phylogenetic inferences indicated this species as an individual well-supported clade (MP/ML/BI=100/100/1) in the genus (Fig. 2).(Fuckel) L.C. Mejía. Stud. Mycol. 68: 225. 2011.ACBB0FE2-EF21-5D11-B50D-8F58DF82058DFigure 6
Figure 6.
on (BJFC-S1724) A–C habit of conidiomata on twigs D transverse section through conidiomata E longitudinal section through conidiomata F, G conidiogenous cells attached with conidia H, I condia. Scale bars: 2 mm (A); 1 mm (B, C); 500 μm (D, E); 10 μm (F–I).
See Butin (1958)on (BJFC-S1724) A–C habit of conidiomata on twigs D transverse section through conidiomata E longitudinal section through conidiomata F, G conidiogenous cells attached with conidia H, I condia. Scale bars: 2 mm (A); 1 mm (B, C); 500 μm (D, E); 10 μm (F–I).China. Beijing: Haidian district, , on branches of , 12 November 2017, N. Jiang (BJFC-S1724; living culture: CFCC 53016 and CFCC 53017).is a common plant pathogenic fungus causing poplar canker in China. The current identification follows previous descriptions and records (Butin 1958). In the present study, two isolates (CFCC 53016 and CFCC 53017) from symptomatic branches of were congruent with based on morphology and DNA sequences data (Fig. 3). We therefore describe as a known species for this clade.
Discussion
In this study, three gnomoniaceous species were identified based on morphological and molecular phylogenetic analyses. As a result, typified with is proposed as a new genus in for its distinct phylogenic position and distinctive sexual morphs. Also, strains were successfully isolated from leaf spot of , and were identified as a new species in , which was typified by having pycnidia with hyaline, oval, one-celled conidia (Walker et al. 2010).The type species of , , is unique through its developed pseudostromata and ascospores with distinct hyaline sheath. In the molecular phylogeny, is closely related to species of . is characterized by the formation of synnemata and no sexual morph is known for this species (Jiang et al. 2019). However, can be easily distinguished from based on ITS, LSU, tef1 and loci. Therefore, the unique morphology in combination with an isolated phylogenetic position within warrant the establishment of a new genus.Most species of show host preference or potentially limited host specificity to genera in the , and (Sogonov et al. 2008). In the present study, isolates were collected from leaf spot of , and described as a novel pathogen depending on its asexual state, . Four taxa, , , , and , have been found on host plants. However, can be easily distinguished from the four species in conidial size (16.5–20 × 4–5.5 µm in vs. 5.0–8.0 × 2.0–4.0 µm in vs. 5.0–8.0 × 2.0–3.5 µm in vs. 6.0–9.5 × 2.0–3.5 µm in vs. 4.9–9.8 × 2.9–4.9 µm in ), as well as supported by molecular data (Walker et al. 2010; Crous et al. 2012; Visentin et al. 2012).is regarded as the pathogen responsible for poplar canker. Butin (1958) presented a full description with illustrations of this species as . Mejía et al. (2011a) treated as a synonym of based on analyses of cultural and DNA sequence data. In this paper, forms a highly supported monophyletic group (Fig. 3) characterized by having conidia with obvious hyaline sheath. It is the first time that we have been able to provide detailed morphological diagrams in China.
Authors: P W Crous; A J Carnegie; M J Wingfield; R Sharma; G Mughini; M E Noordeloos; A Santini; Y S Shouche; J D P Bezerra; B Dima; V Guarnaccia; I Imrefi; Ž Jurjević; D G Knapp; G M Kovács; D Magistà; G Perrone; T Rämä; Y A Rebriev; R G Shivas; S M Singh; C M Souza-Motta; R Thangavel; N N Adhapure; A V Alexandrova; A C Alfenas; R F Alfenas; P Alvarado; A L Alves; D A Andrade; J P Andrade; R N Barbosa; A Barili; C W Barnes; I G Baseia; J-M Bellanger; C Berlanas; A E Bessette; A R Bessette; A Yu Biketova; F S Bomfim; T E Brandrud; K Bransgrove; A C Q Brito; J F Cano-Lira; T Cantillo; A D Cavalcanti; R Cheewangkoon; R S Chikowski; C Conforto; T R L Cordeiro; J D Craine; R Cruz; U Damm; R J V de Oliveira; J T de Souza; H G de Souza; J D W Dearnaley; R A Dimitrov; F Dovana; A Erhard; F Esteve-Raventós; C R Félix; G Ferisin; R A Fernandes; R J Ferreira; L O Ferro; C N Figueiredo; J L Frank; K T L S Freire; D García; J Gené; A Gêsiorska; T B Gibertoni; R A G Gondra; D E Gouliamova; D Gramaje; F Guard; L F P Gusmão; S Haitook; Y Hirooka; J Houbraken; V Hubka; A Inamdar; T Iturriaga; I Iturrieta-González; M Jadan; N Jiang; A Justo; A V Kachalkin; V I Kapitonov; M Karadelev; J Karakehian; T Kasuya; I Kautmanová; J Kruse; I Kušan; T A Kuznetsova; M F Landell; K-H Larsson; H B Lee; D X Lima; C R S Lira; A R Machado; H Madrid; O M C Magalhães; H Majerova; E F Malysheva; R R Mapperson; P A S Marbach; M P Martín; A Martín-Sanz; N Matočec; A R McTaggart; J F Mello; R F R Melo; A Mešić; S J Michereff; A N Miller; A Minoshima; L Molinero-Ruiz; O V Morozova; D Mosoh; M Nabe; R Naik; K Nara; S S Nascimento; R P Neves; I Olariaga; R L Oliveira; T G L Oliveira; T Ono; M E Ordoñez; A de M Ottoni; L M Paiva; F Pancorbo; B Pant; J Pawłowska; S W Peterson; D B Raudabaugh; E Rodríguez-Andrade; E Rubio; K Rusevska; A L C M A Santiago; A C S Santos; C Santos; N A Sazanova; S Shah; J Sharma; B D B Silva; J L Siquier; M S Sonawane; A M Stchigel; T Svetasheva; N Tamakeaw; M T Telleria; P V Tiago; C M Tian; Z Tkalčec; M A Tomashevskaya; H H Truong; M V Vecherskii; C M Visagie; A Vizzini; N Yilmaz; I V Zmitrovich; E A Zvyagina; T Boekhout; T Kehlet; T Læssøe; J Z Groenewald Journal: Persoonia Date: 2019-07-19 Impact factor: 11.051