Literature DB >> 32717179

Identifying prostate cancer and its clinical risk in asymptomatic men using machine learning of high dimensional peripheral blood flow cytometric natural killer cell subset phenotyping data.

Simon P Hood1, Georgina Cosma2, A Graham Pockley1,3, Gemma A Foulds1,3, Catherine Johnson1,3, Stephen Reeder1,3, Stéphanie E McArdle1,3, Masood A Khan4.   

Abstract

We demonstrate that prostate cancer can be identified by flow cytometric profiling of blood immune cell subsets. Herein, we profiled natural killer (NK) cell subsets in the blood of 72 asymptomatic men with Prostate-Specific Antigen (PSA) levels < 20 ng ml-1, of whom 31 had benign disease (no cancer) and 41 had prostate cancer. Statistical and computational methods identified a panel of eight phenotypic features ([Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text]) that, when incorporated into an Ensemble machine learning prediction model, distinguished between the presence of benign prostate disease and prostate cancer. The machine learning model was then adapted to predict the D'Amico Risk Classification using data from 54 patients with prostate cancer and was shown to accurately differentiate between the presence of low-/intermediate-risk disease and high-risk disease without the need for additional clinical data. This simple blood test has the potential to transform prostate cancer diagnostics.
© 2020, Hood et al.

Entities:  

Keywords:  cancer biology; computational biology; diagnosis; human; immune phenotyping; machine learning; natural killer (NK) cells; prostate cancer; prostate specific antigen (psa); systems biology

Year:  2020        PMID: 32717179      PMCID: PMC7386909          DOI: 10.7554/eLife.50936

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  17 in total

1.  Transperineal template prostate biopsies in men with raised PSA despite two previous sets of negative TRUS-guided prostate biopsies.

Authors:  Shady Nafie; Raj P Pal; John P Dormer; Masood A Khan
Journal:  World J Urol       Date:  2013-12-14       Impact factor: 4.226

Review 2.  Obstacles Posed by the Tumor Microenvironment to T cell Activity: A Case for Synergistic Therapies.

Authors:  Kristin G Anderson; Ingunn M Stromnes; Philip D Greenberg
Journal:  Cancer Cell       Date:  2017-03-13       Impact factor: 31.743

3.  Prostate cancer detection rate and the importance of premalignant lesion in rebiopsy.

Authors:  Damir Aganovic; Alden Prcic; Benjamin Kulovac; Osman Hadziosmanovic
Journal:  Med Arh       Date:  2011

4.  Cancer surveillance series: interpreting trends in prostate cancer--part I: Evidence of the effects of screening in recent prostate cancer incidence, mortality, and survival rates.

Authors:  B F Hankey; E J Feuer; L X Clegg; R B Hayes; J M Legler; P C Prorok; L A Ries; R M Merrill; R S Kaplan
Journal:  J Natl Cancer Inst       Date:  1999-06-16       Impact factor: 13.506

5.  Measurement of prostate-specific antigen in serum as a screening test for prostate cancer.

Authors:  W J Catalona; D S Smith; T L Ratliff; K M Dodds; D E Coplen; J J Yuan; J A Petros; G L Andriole
Journal:  N Engl J Med       Date:  1991-04-25       Impact factor: 91.245

6.  Transperineal prostate biopsy detects significant cancer in patients with elevated prostate-specific antigen (PSA) levels and previous negative transrectal biopsies.

Authors:  Magne Dimmen; Ljiljana Vlatkovic; Knut-Håkon Hole; Jahn M Nesland; Bjørn Brennhovd; Karol Axcrona
Journal:  BJU Int       Date:  2011-11-16       Impact factor: 5.588

Review 7.  Effect of tumor cells and tumor microenvironment on NK-cell function.

Authors:  Massimo Vitale; Claudia Cantoni; Gabriella Pietra; Maria Cristina Mingari; Lorenzo Moretta
Journal:  Eur J Immunol       Date:  2014-06       Impact factor: 5.532

8.  The role of transperineal template prostate biopsies in prostate cancer diagnosis in biopsy naïve men with PSA less than 20 ng ml(-1.).

Authors:  S Nafie; J K Mellon; J P Dormer; M A Khan
Journal:  Prostate Cancer Prostatic Dis       Date:  2014-03-04       Impact factor: 5.554

9.  Diagnostic accuracy of multi-parametric MRI and TRUS biopsy in prostate cancer (PROMIS): a paired validating confirmatory study.

Authors:  Hashim U Ahmed; Ahmed El-Shater Bosaily; Louise C Brown; Rhian Gabe; Richard Kaplan; Mahesh K Parmar; Yolanda Collaco-Moraes; Katie Ward; Richard G Hindley; Alex Freeman; Alex P Kirkham; Robert Oldroyd; Chris Parker; Mark Emberton
Journal:  Lancet       Date:  2017-01-20       Impact factor: 79.321

10.  Characterization of prostate cancer detected at repeat biopsy.

Authors:  Takeshi Yuasa; Norihiko Tsuchiya; Teruaki Kumazawa; Takamitsu Inoue; Shintaro Narita; Mitsuru Saito; Yohei Horikawa; Shigeru Satoh; Tomonori Habuchi
Journal:  BMC Urol       Date:  2008-11-10       Impact factor: 2.264

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  3 in total

1.  Prostate Cancer: Early Detection and Assessing Clinical Risk Using Deep Machine Learning of High Dimensional Peripheral Blood Flow Cytometric Phenotyping Data.

Authors:  Georgina Cosma; Stéphanie E McArdle; Gemma A Foulds; Simon P Hood; Stephen Reeder; Catherine Johnson; Masood A Khan; A Graham Pockley
Journal:  Front Immunol       Date:  2021-12-16       Impact factor: 7.561

2.  Prostate Cancer Peripheral Blood NK Cells Show Enhanced CD9, CD49a, CXCR4, CXCL8, MMP-9 Production and Secrete Monocyte-Recruiting and Polarizing Factors.

Authors:  Matteo Gallazzi; Denisa Baci; Lorenzo Mortara; Annalisa Bosi; Giuseppe Buono; Angelo Naselli; Andrea Guarneri; Federico Dehò; Paolo Capogrosso; Adriana Albini; Douglas M Noonan; Antonino Bruno
Journal:  Front Immunol       Date:  2021-01-25       Impact factor: 7.561

Review 3.  Systemic Effects Reflected in Specific Biomarker Patterns Are Instrumental for the Paradigm Change in Prostate Cancer Management: A Strategic Paper.

Authors:  Olga Golubnitschaja; Peter Kubatka; Alena Mazurakova; Marek Samec; Abdullah Alajati; Frank A Giordano; Vincenzo Costigliola; Jörg Ellinger; Manuel Ritter
Journal:  Cancers (Basel)       Date:  2022-01-28       Impact factor: 6.639

  3 in total

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