Literature DB >> 32714738

A solvent-free delipidation method for functional validation of lipases.

Achintya Kumar Dolui1,2, Panneerselvam Vijayaraj1,2.   

Abstract

Extracting protein in its active form is critical for its functional characterization, and lipid removal is an essential step in the protein extraction process for further downstream applications. In the present study, we revisited the delipidation protocol and developed a rapid, solvent-free delipidation method using activated silica. The delipidated samples showed improved optical clarity and a significant reduction of endogenous lipids. The functional integrity of the lipases present in the delipidated sample was validated by in vitro enzyme assay using physiological substrate which includes neutral lipid as well as phospholipid. The accessibility of active site of the extracted enzymes was demonstrated by activity-based protein profiling (ABPP), a functional chemoproteomic approach. Detection of serine hydrolases using ABPP probe labeling was enhanced upon delipidation. Further, the total polyphenol content was significantly reduced, which helps to enhance the protein enrichment and small-molecule inhibitor screening by ABPP. Collectively, these results suggest that the present solvent-free delipidation approach is efficient and highly compatible with the functional characterization of the enzymes, particularly lipid hydrolases. © King Abdulaziz City for Science and Technology 2020.

Entities:  

Keywords:  Activity-based protein profiling; Delipidation; Enzymes; Lipases; Lipids; Rice bran

Year:  2020        PMID: 32714738      PMCID: PMC7371773          DOI: 10.1007/s13205-020-02338-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  33 in total

Review 1.  Thematic review series: proteomics. Proteomic analysis of lipid-protein complexes.

Authors:  Tomas Vaisar
Journal:  J Lipid Res       Date:  2009-02-19       Impact factor: 5.922

Review 2.  The metabolic serine hydrolases and their functions in mammalian physiology and disease.

Authors:  Jonathan Z Long; Benjamin F Cravatt
Journal:  Chem Rev       Date:  2011-06-23       Impact factor: 60.622

3.  Comparison of three detergent-free protein extraction protocols for white adipose tissue.

Authors:  Tatjana Sajic; Gérard Hopfgartner; Ildiko Szanto; Emmanuel Varesio
Journal:  Anal Biochem       Date:  2011-04-20       Impact factor: 3.365

4.  Flocculation of serum lipoproteins with cyclodextrins: application to assay of hyperlipidemic serum.

Authors:  A Sharma; K Anderson; J W Baker
Journal:  Clin Chem       Date:  1990-03       Impact factor: 8.327

5.  Lipid extraction of tissues with a low-toxicity solvent.

Authors:  A Hara; N S Radin
Journal:  Anal Biochem       Date:  1978-10-01       Impact factor: 3.365

6.  Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics.

Authors:  Vitali Matyash; Gerhard Liebisch; Teymuras V Kurzchalia; Andrej Shevchenko; Dominik Schwudke
Journal:  J Lipid Res       Date:  2008-02-16       Impact factor: 5.922

7.  Comparison of six methods for the extraction of lipids from serum in terms of effectiveness and protein preservation.

Authors:  T P L Ferraz; M C Fiúza; M L A Dos Santos; L Pontes De Carvalho; N M Soares
Journal:  J Biochem Biophys Methods       Date:  2004-03-31

8.  Improving palm oil quality through identification and mapping of the lipase gene causing oil deterioration.

Authors:  F Morcillo; D Cros; N Billotte; G-F Ngando-Ebongue; H Domonhédo; M Pizot; T Cuéllar; S Espéout; R Dhouib; F Bourgis; S Claverol; T J Tranbarger; B Nouy; V Arondel
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Delipidation of Plasma Has Minimal Effects on Human Butyrylcholinesterase.

Authors:  Seda Onder; Ozden Tacal; Oksana Lockridge
Journal:  Front Pharmacol       Date:  2018-02-15       Impact factor: 5.810

10.  Impact of delipidated estrous sheep serum supplementation on in vitro maturation, cryotolerance and endoplasmic reticulum stress gene expression of sheep oocytes.

Authors:  Natalibeth Barrera; Pedro C Dos Santos Neto; Federico Cuadro; Diego Bosolasco; Ana P Mulet; Martina Crispo; Alejo Menchaca
Journal:  PLoS One       Date:  2018-06-18       Impact factor: 3.240

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  2 in total

1.  Activity-based Protein Profiling of Serine Hydrolase Superfamily Enzymes.

Authors:  Achintya Kumar Dolui; Mahadev Latha; Panneerselvam Vijayaraj
Journal:  Bio Protoc       Date:  2022-03-20

2.  Functional Omics Identifies Serine Hydrolases That Mobilize Storage Lipids during Rice Seed Germination.

Authors:  Achintya Kumar Dolui; Panneerselvam Vijayaraj
Journal:  Plant Physiol       Date:  2020-08-14       Impact factor: 8.340

  2 in total

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