| Literature DB >> 32714431 |
Li Liu1, Liang Kuang1,2, Yunfeng Ji1.
Abstract
Brain tumors are one of the most deadly diseases with a high mortality rate. The shape and size of the tumor are random during the growth process. Brain tumor segmentation is a brain tumor assisted diagnosis technology that separates different brain tumor structures such as edema and active and tumor necrosis tissues from normal brain tissue. Magnetic resonance imaging (MRI) technology has the advantages of no radiation impact on the human body, good imaging effect on structural tissues, and an ability to realize tomographic imaging of any orientation. Therefore, doctors often use MRI brain tumor images to analyze and process brain tumors. In these images, the tumor structure is only characterized by grayscale changes, and the developed images obtained by different equipment and different conditions may also be different. This makes it difficult for traditional image segmentation methods to deal well with the segmentation of brain tumor images. Considering that the traditional single-mode MRI brain tumor images contain incomplete brain tumor information, it is difficult to segment the single-mode brain tumor images to meet clinical needs. In this paper, a sparse subspace clustering (SSC) algorithm is introduced to process the diagnosis of multimodal MRI brain tumor images. In the absence of added noise, the proposed algorithm has better advantages than traditional methods. Compared with the top 15 in the Brats 2015 competition, the accuracy is not much different, being basically stable between 10 and 15. In order to verify the noise resistance of the proposed algorithm, this paper adds 5%, 10%, 15%, and 20% Gaussian noise to the test image. Experimental results show that the proposed algorithm has better noise immunity than a comparable algorithm.Entities:
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Year: 2020 PMID: 32714431 PMCID: PMC7355351 DOI: 10.1155/2020/8620403
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.238
Figure 1Tumor labels manually segmented on T1c and T2 modal images.
Figure 2Flow of the brain tumor segmentation method based on the discriminant model.
Figure 3Flair and T2 images and corresponding tumor labels.
Figure 4SLIC super pixel segmentation. (a) Original image. (b) SLIC superpixel segmentation image.
Figure 5The basic framework of sparse subspace clustering.
Figure 6Image segmentation framework based on sparse subspace clustering.
Figure 7FLAIR image segmentation result when the m value changes. (a) Superpixel segmentation result when m = 10. (b) Superpixel segmentation result when m = 20. (c) Superpixel segmentation result when m = 30.
Figure 8FLAIR image segmentation result when the n value changes. (a) Superpixel segmentation result when n = 300. (b) Superpixel segmentation result when n = 500. (c) Superpixel segmentation result when n = 1000.
Evaluation indicator introduction.
| Number | Index | Explanation |
|---|---|---|
| 1 | Dice( | The Dice coefficient is a set similarity measurement method. In the image, it mainly refers to the degree to which the actual segmentation result and the golden segmentation result overlap each other, and the value is [0, 1]. Among them, 0 represents that there is no overlap between the actual segmentation result and the golden segmentation result, which represents the worst segmentation accuracy at this time, and 1 represents that the actual segmentation result and the golden segmentation result completely overlap, which represents the optimal segmentation accuracy at this time. |
| 2 | Jaccard( | The Jaccard coefficient is a method similar to the Dice coefficient that relies on similarity as a measure. It describes the degree of overlap between the actual segmentation result and the golden segmentation result from another perspective. |
| 3 | Precision( | The false positive rate (Precision) reflects the accuracy of the actual segmentation result. The ratio of the overlap between the actual segmentation result and the golden segmentation result is used for description. The higher the ratio, the higher the proportion of the golden result included in the actual segmentation result. |
| 4 | Recall( | The true positive rate (Recall) reflects the accuracy of the actual results in the actual segmentation results. It refers to the ratio of the overlap between the actual and golden section results. The higher the ratio, the higher the proportion of the true segmentation result in the golden section. |
Comparison of multimodal image segmentation results.
| Experimental sample | Index | ||||
|---|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | ||
| Malignant tumor | 1 | 0.8923 | 0.8042 | 0.9627 | 0.8287 |
| 2 | 0.8596 | 0.7752 | 0.9748 | 0.7789 | |
| 3 | 0.8385 | 0.7431 | 0.9263 | 0.7821 | |
| 4 | 0.9507 | 0.8785 | 0.9874 | 0.9264 | |
| 5 | 0.9310 | 0.7886 | 0.9845 | 0.7954 | |
| 6 | 0.8746 | 0.7964 | 0.9678 | 0.8103 | |
| 7 | 0.9152 | 0.8522 | 0.9034 | 0.9371 | |
| 8 | 0.8386 | 0.7371 | 0.9976 | 0.7352 | |
| 9 | 0.8731 | 0.7796 | 0.9948 | 0.7911 | |
| 10 | 0.8694 | 0.7649 | 0.9563 | 0.8002 | |
| 11 | 0.8627 | 0.7628 | 0.9915 | 0.7832 | |
| 12 | 0.7016 | 0.5364 | 0.9997 | 0.5349 | |
| 13 | 0.8018 | 0.6742 | 0.9306 | 0.7132 | |
| 14 | 0.8220 | 0.6976 | 0.9736 | 0.7120 | |
| 15 | 0.8129 | 0.6842 | 0.9637 | 0.7058 | |
| Bright tumor | 1 | 0.7961 | 0.6425 | 0.9264 | 0.6779 |
| 2 | 0.8129 | 0.8413 | 0.9779 | 0.8646 | |
| 3 | 0.9298 | 0.6624 | 0.9836 | 0.6732 | |
| 4 | 0.9401 | 0.6830 | 0.7375 | 0.9118 | |
| 5 | 0.9228 | 0.8698 | 0.9990 | 0.8769 | |
| 6 | 0.9418 | 0.8891 | 0.9862 | 0.8996 | |
| 7 | 0.7147 | 0.5510 | 0.9996 | 0.5534 | |
| 8 | 0.7753 | 0.6256 | 0.9676 | 0.6394 | |
| 9 | 0.9027 | 0.8244 | 0.9834 | 0.8426 | |
| 10 | 0.8624 | 0.7632 | 0.9623 | 0.7824 | |
| Mean | 0.8577 | 0.7451 | 0.9615 | 0.7743 | |
The top 15 segmentation results of the Brats 2015 challenge.
| Rank | Dice | Precision | Recall |
|---|---|---|---|
| 1 | 0.8730 | 0.8715 | 0.8916 |
| 2 | 0.8710 | 0.8621 | 0.9140 |
| 3 | 0.8720 | 0.8531 | 0.8633 |
| 4 | 0.8511 | 0.8619 | 0.8633 |
| 5 | 0.8739 | 0.8532 | 0.9180 |
| 6 | 0.8650 | 0.8530 | 0.9011 |
| 7 | 0.8325 | 0.8344 | 0.8457 |
| 8 | 0.8670 | 0.8623 | 0.8820 |
| 9 | 0.7760 | 0.7475 | 0.8635 |
| 10 | 0.8513 | 0.8248 | 0.9150 |
| 11 | 0.8417 | 0.8345 | 0.8917 |
| 12 | 0.8580 | 0.8716 | 0.8635 |
| 13 | 0.8512 | 0.8343 | 0.8916 |
| 14 | 0.8327 | 0.8527 | 0.8363 |
| 15 | 0.8328 | 0.8055 | 0.9090 |
Comparison of evaluation indexes of different segmentation methods.
| Methods | Evaluation index | |||
|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | |
| FCM | 0.7110 | 0.5564 | 0.7205 | 0.6975 |
| SVM | 0.8012 | 0.7056 | 0.9013 | 0.7558 |
| SSC | 0.8577 | 0.7451 | 0.9615 | 0.7743 |
Figure 9Comparison of evaluation indexes of various algorithms.
Comparison of multimodal image segmentation results with 5% noise.
| Experimental sample | Index | ||||
|---|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | ||
| Malignant tumor | 1 | 0.8123 | 0.7758 | 0.9036 | 0.8080 |
| 2 | 0.8016 | 0.7469 | 0.9229 | 0.7568 | |
| 3 | 0.8001 | 0.7154 | 0.9086 | 0.7735 | |
| 4 | 0.8462 | 0.8369 | 0.9321 | 0.8858 | |
| 5 | 0.8528 | 0.7427 | 0.9650 | 0.7804 | |
| 6 | 0.8134 | 0.7528 | 0.9487 | 0.7940 | |
| 7 | 0.8347 | 0.8274 | 0.8936 | 0.9166 | |
| 8 | 0.8006 | 0.7144 | 0.9376 | 0.7130 | |
| 9 | 0.8104 | 0.7423 | 0.9721 | 0.7668 | |
| 10 | 0.8110 | 0.7417 | 0.9325 | 0.7878 | |
| 11 | 0.8234 | 0.7326 | 0.9639 | 0.7626 | |
| 12 | 0.6841 | 0.5146 | 0.9688 | 0.5229 | |
| 13 | 0.7695 | 0.6155 | 0.9129 | 0.7007 | |
| 14 | 0.7996 | 0.6639 | 0.9639 | 0.7013 | |
| 15 | 0.8005 | 0.6582 | 0.9470 | 0.6982 | |
| Bright tumor | 1 | 0.7486 | 0.6301 | 0.9003 | 0.6663 |
| 2 | 0.7952 | 0.8204 | 0.9575 | 0.8452 | |
| 3 | 0.8985 | 0.6471 | 0.9588 | 0.6620 | |
| 4 | 0.8625 | 0.6598 | 0.7176 | 0.9031 | |
| 5 | 0.8563 | 0.8446 | 0.9425 | 0.8206 | |
| 6 | 0.9012 | 0.8396 | 0.9393 | 0.8759 | |
| 7 | 0.6852 | 0.5329 | 0.9579 | 0.5414 | |
| 8 | 0.7410 | 0.6012 | 0.9493 | 0.6225 | |
| 9 | 0.8863 | 0.8071 | 0.9389 | 0.8223 | |
| 10 | 0.8401 | 0.7540 | 0.9522 | 0.7639 | |
| Mean | 0.8110 | 0.7167 | 0.9315 | 0.7557 | |
Comparison of multimodal image segmentation results with 10% noise.
| Experimental sample | Index | ||||
|---|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | ||
| Malignant tumor | 1 | 0.7585 | 0.7147 | 0.8452 | 0.7581 |
| 2 | 0.7662 | 0.7020 | 0.8967 | 0.7052 | |
| 3 | 0.7596 | 0.6996 | 0.8746 | 0.7196 | |
| 4 | 0.8008 | 0.7989 | 0.9003 | 0.8320 | |
| 5 | 0.8020 | 0.7011 | 0.9114 | 0.7404 | |
| 6 | 0.7642 | 0.7102 | 0.9095 | 0.7462 | |
| 7 | 0.8001 | 0.7834 | 0.8482 | 0.8346 | |
| 8 | 0.7779 | 0.6996 | 0.9063 | 0.6730 | |
| 9 | 0.7823 | 0.7032 | 0.9101 | 0.7162 | |
| 10 | 0.7863 | 0.7142 | 0.9011 | 0.7285 | |
| 11 | 0.7903 | 0.7020 | 0.9039 | 0.7126 | |
| 12 | 0.6523 | 0.5011 | 0.9008 | 0.5028 | |
| 13 | 0.7124 | 0.6031 | 0.8557 | 0.6896 | |
| 14 | 0.7210 | 0.6313 | 0.8932 | 0.6745 | |
| 15 | 0.7695 | 0.6220 | 0.8712 | 0.6512 | |
| Bright tumor | 1 | 0.7103 | 0.6102 | 0.8103 | 0.6326 |
| 2 | 0.7533 | 0.7945 | 0.8410 | 0.8071 | |
| 3 | 0.8120 | 0.6103 | 0.8124 | 0.6426 | |
| 4 | 0.8236 | 0.6120 | 0.6731 | 0.8426 | |
| 5 | 0.8022 | 0.8008 | 0.8526 | 0.7945 | |
| 6 | 0.8471 | 0.8106 | 0.8989 | 0.8142 | |
| 7 | 0.6326 | 0.5030 | 0.9009 | 0.5231 | |
| 8 | 0.7002 | 0.5936 | 0.8855 | 0.6005 | |
| 9 | 0.8308 | 0.7852 | 0.8797 | 0.8030 | |
| 10 | 0.8001 | 0.7262 | 0.8722 | 0.7103 | |
| Mean | 0.7662 | 0.6853 | 0.8702 | 0.7142 | |
Comparison of multimodal image segmentation results with 15% noise.
| Experimental sample | Index | ||||
|---|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | ||
| Malignant tumor | 1 | 0.7010 | 0.6235 | 0.7788 | 0.6963 |
| 2 | 0.7121 | 0.6417 | 0.8293 | 0.6625 | |
| 3 | 0.7006 | 0.6582 | 0.8126 | 0.6741 | |
| 4 | 0.7259 | 0.7128 | 0.8253 | 0.6701 | |
| 5 | 0.7361 | 0.6733 | 0.8256 | 0.6693 | |
| 6 | 0.7140 | 0.6682 | 0.7896 | 0.6642 | |
| 7 | 0.7263 | 0.7117 | 0.7526 | 0.6723 | |
| 8 | 0.7030 | 0.6336 | 0.7864 | 0.6008 | |
| 9 | 0.7234 | 0.6402 | 0.8124 | 0.6037 | |
| 10 | 0.7026 | 0.6513 | 0.8102 | 0.6395 | |
| 11 | 0.7263 | 0.6412 | 0.8006 | 0.6279 | |
| 12 | 0.6136 | 0.4562 | 0.8152 | 0.4963 | |
| 13 | 0.6742 | 0.5846 | 0.7852 | 0.6230 | |
| 14 | 0.6892 | 0.6006 | 0.7984 | 0.6172 | |
| 15 | 0.7211 | 0.6001 | 0.8010 | 0.6003 | |
| Bright tumor | 1 | 0.6982 | 0.5895 | 0.7142 | 0.6110 |
| 2 | 0.7120 | 0.7312 | 0.7265 | 0.6753 | |
| 3 | 0.7361 | 0.5742 | 0.7416 | 0.5996 | |
| 4 | 0.7216 | 0.5863 | 0.6246 | 0.7582 | |
| 5 | 0.7121 | 0.7323 | 0.7693 | 0.7296 | |
| 6 | 0.7132 | 0.7125 | 0.8263 | 0.7369 | |
| 7 | 0.6030 | 0.4852 | 0.8082 | 0.5020 | |
| 8 | 0.6482 | 0.5611 | 0.8060 | 0.5801 | |
| 9 | 0.7413 | 0.7230 | 0.8132 | 0.6778 | |
| 10 | 0.7143 | 0.6736 | 0.8007 | 0.6256 | |
| Mean | 0.7028 | 0.6346 | 0.7862 | 0.6405 | |
Comparison of multimodal image segmentation results with 20% noise.
| Experimental sample | Index | ||||
|---|---|---|---|---|---|
| Dice | Jaccard | Precision | Recall | ||
| Malignant tumor | 1 | 0.6013 | 0.5582 | 0.5786 | 0.6030 |
| 2 | 0.6230 | 0.5631 | 0.6023 | 0.5436 | |
| 3 | 0.6058 | 0.5477 | 0.6113 | 0.5633 | |
| 4 | 0.6003 | 0.5693 | 0.6037 | 0.5721 | |
| 5 | 0.6146 | 0.5746 | 0.6012 | 0.5126 | |
| 6 | 0.6008 | 0.5832 | 0.5963 | 0.5362 | |
| 7 | 0.6001 | 0.5746 | 0.5748 | 0.5284 | |
| 8 | 0.6200 | 0.5365 | 0.5836 | 0.5369 | |
| 9 | 0.5963 | 0.5208 | 0.5862 | 0.5623 | |
| 10 | 0.5982 | 0.5300 | 0.5916 | 0.5123 | |
| 11 | 0.5996 | 0.5613 | 0.5746 | 0.5023 | |
| 12 | 0.5342 | 0.4203 | 0.5842 | 0.4523 | |
| 13 | 0.5846 | 0.5110 | 0.5532 | 0.5203 | |
| 14 | 0.5768 | 0.5030 | 0.5631 | 0.5417 | |
| 15 | 0.5636 | 0.5007 | 0.5711 | 0.5731 | |
| Bright tumor | 1 | 0.5875 | 0.5114 | 0.5369 | 0.5324 |
| 2 | 0.5939 | 0.5630 | 0.5284 | 0.6064 | |
| 3 | 0.5742 | 0.5023 | 0.5748 | 0.5412 | |
| 4 | 0.5936 | 0.5431 | 0.5303 | 0.6234 | |
| 5 | 0.5768 | 0.5623 | 0.5923 | 0.6127 | |
| 6 | 0.5693 | 0.5665 | 0.5830 | 0.6471 | |
| 7 | 0.5234 | 0.4528 | 0.5746 | 0.4864 | |
| 8 | 0.5236 | 0.5220 | 0.5822 | 0.5520 | |
| 9 | 0.5741 | 0.5360 | 0.5623 | 0.6113 | |
| 10 | 0.5698 | 0.5142 | 0.5722 | 0.5436 | |
| Mean | 0.5842 | 0.5331 | 0.5765 | 0.5527 | |
Comparison of segmentation performance of three algorithms under different noise ratios.
| Noise ratio | Algorithm | Dice | Jaccard | Precision | Recall |
|---|---|---|---|---|---|
| 5% | FCM | 0.7002 | 0.5316 | 0.7010 | 0.6753 |
| SVM | 0.7912 | 0.6902 | 0.8956 | 0.7412 | |
| SSC | 0.8410 | 0.7367 | 0.9515 | 0.7657 | |
| 10% | FCM | 0.6833 | 0.5241 | 0.6931 | 0.6595 |
| SVM | 0.7800 | 0.6789 | 0.8763 | 0.7286 | |
| SSC | 0.8362 | 0.7353 | 0.9402 | 0.7542 | |
| 15% | FCM | 0.6658 | 0.5056 | 0.6767 | 0.6323 |
| SVM | 0.7682 | 0.6574 | 0.8553 | 0.7001 | |
| SSC | 0.8268 | 0.7246 | 0.9362 | 0.7405 | |
| 20% | FCM | 0.6312 | 0.4712 | 0.6420 | 0.6125 |
| SVM | 0.7404 | 0.6310 | 0.8211 | 0.6803 | |
| SSC | 0.8182 | 0.7131 | 0.9265 | 0.7327 |
Figure 10Segmentation performance of three algorithms under different noise contents.