| Literature DB >> 33841095 |
Lei Hua1, Yi Gu1, Xiaoqing Gu2, Jing Xue3, Tongguang Ni2.
Abstract
Background: The brain magnetic resonance imaging (MRI) image segmentation method mainly refers to the division of brain tissue, which can be divided into tissue parts such as white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF). The segmentation results can provide a basis for medical image registration, 3D reconstruction, and visualization. Generally, MRI images have defects such as partial volume effects, uneven grayscale, and noise. Therefore, in practical applications, the segmentation of brain MRI images has difficulty obtaining high accuracy. Materials andEntities:
Keywords: adaptive learning; brain magnetic resonance imaging; fuzzy clustering; image segmentation; multi-view learning
Year: 2021 PMID: 33841095 PMCID: PMC8029590 DOI: 10.3389/fnins.2021.662674
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
FIGURE 1The motivation for this research.
Image grayscale characteristics of adult brain tissue.
| Organization | T1-weighted image | Pd weighted image | T2 weighted image |
| WM | Off-white | Gray | Black gray |
| GM | Gray | Off-white | Off-white |
| CSF | Black | Gray | White |
Related attributes of main brain tissues in MRI images.
| Tissue | T1 (s) | T2 (ms) | ρ (1.5) |
| CSF | 0.8–20 | 110–2,000 | 70–230 |
| WM | 0.76–1.08 | 61–100 | 70–90 |
| GM | 1.09–2.15 | 61–109 | 85–125 |
| Meninges | 0.5–2.2 | 50–165 | 5–44 |
| Muscle | 0.95–1.82 | 20–67 | 45–90 |
| Adipose | 0.2–0.75 | 53–94 | 50–100 |
FIGURE 2Cluster analysis flowchart.
Description of related symbols in FCM.
| Symbols | Description | Symbols | Description |
| Dataset | The | ||
| Number of clusters | Total number of image pixels | ||
| The membership degree of pixel | The | ||
| Euclidean distance from sample point | Fuzzy factor |
FIGURE 3B-MRI-IS process based on FCM.
Description of related symbols in the multiview clustering algorithm.
| Symbols | Description | Symbols | Description |
| Multiview dataset | |||
| Total number of samples | Number of views | ||
| Number of clusters | η | Parameters that regulate the importance of each view | |
| Class center of the | Membership of the |
Evaluation index descriptions.
| Index | Description |
| True positive ( | |
| These two segmentation indexes are related to the degree of membership | |
| The segmented image is compared with the “gold standard” image, and the ME. |
Brain image database.
| Database | Image size | Classification details |
| Brain Perfusion Database ( | 194*237 | Number of clusters: 4, which are WM, GM, CSF, and background |
| Allen Brain Atlas ( | 256*128 | |
| BRATS ( | 155*240*240 | |
| Brain Web ( | 181*217*181 | |
| IBSR ( | 256*256 |
FIGURE 4B-MRI-IS process based on multiview clustering.
FIGURE 5Schematic diagram of IMV-FCM algorithm.
IMV-FCM algorithm.
| Input | Multiview sample set |
| Output | The final division matrix |
| Step 1 | Randomly generate fuzzy membership matrix |
| Step 2 | According to Eq. 12, the cluster center |
| Step 3 | According to Eq. 13, the membership degree |
| Step 4 | According to Eq. 14, the view fusion weight matrix |
| Step 5 | If || |
| Step 6 | After the algorithm converges, the fuzzy membership of each view is output. |
| Step 7 | According to the fuzzy membership degree of each view obtained in Step 6, Eq. 15 is used to obtain the final division matrix. |
Parameter setting of various algorithms based on grid search.
| Algorithm | Parameter setting range |
| FCM | Fuzzy factor |
| CoFKM | Fuzzy factor |
| TW- | Regularization parameters λ = {1,2,…,30} and η = {10,20,…,100} |
| CombKM | None |
| Coclustering | Regularization parameter λ = {1,10,100,300,500,800,1000}, regularization parameter μ = {1,10,100,300,500,800,1000}, feature category number |
| IMV-FCM | Fuzzy factor |
JS indicators of each algorithm (100%).
| Noise | Organization | FCM | CoFKM | TW-k-means | CombKM | Coclustering | IMV-FCM |
| 0% | A | 85.73% | 88.22% | 87.76% | 87.85% | 89.96% | 90.45% |
| B | 74.52% | 77.85% | 76.90% | 77.11% | 79.93% | 79.76% | |
| C | 65.98% | 68.31% | 67.58% | 68.32% | 69.94% | 70.74% | |
| Mean | 75.41% | 78.13% | 77.41% | 77.76% | 79.94% | 80.32% | |
| 3% | A | 84.98% | 87.52% | 88.65% | 87.03% | 87.67% | 89.20% |
| B | 73.87% | 76.48% | 76.77% | 75.96% | 76.35% | 78.16% | |
| C | 64.76% | 66.54% | 67.12% | 65.87% | 66.11% | 67.91% | |
| Mean | 74.54% | 76.85% | 77.51% | 76.29% | 76.71% | 78.42% | |
| 5% | A | 84.17% | 86.11% | 86.59% | 85.90% | 85.97% | 87.79% |
| B | 73.25% | 75.43% | 75.86% | 74.97% | 74.98% | 76.58% | |
| C | 64.88% | 66.35% | 66.36% | 65.89% | 66.99% | 67.02% | |
| Mean | 74.10% | 75.96% | 76.27% | 75.59% | 75.98% | 77.13% | |
| 7% | A | 82.21% | 84.46% | 82.32% | 82.98% | 82.12% | 85.80% |
| B | 72.62% | 74.02% | 73.52% | 73.87% | 73.48% | 75.35% | |
| C | 64.14% | 66.62% | 65.07% | 65.85% | 65.17% | 67.56% | |
| Mean | 72.99% | 75.03% | 73.64% | 74.23% | 73.59% | 76.24% | |
| 9% | A | 76.68% | 82.23% | 80.61% | 81.02% | 81.43% | 83.56% |
| B | 70.25% | 73.18% | 71.17% | 71.65% | 71.98% | 72.20% | |
| C | 62.27% | 65.83% | 64.59% | 64.04% | 64.47% | 71.80% | |
| Mean | 69.73% | 73.75% | 72.12% | 72.24% | 72.63% | 75.85% |
DSC indicators of each algorithm (100%).
| Noise | Organization | FCM | CoFKM | TW-k-means | CombKM | Coclustering | IMV-FCM |
| 0% | A | 93.24% | 94.75% | 94.28% | 93.39% | 94.02% | 95.27% |
| B | 86.51% | 87.79% | 87.61% | 86.87% | 87.99% | 88.51% | |
| C | 80.45% | 82.44% | 82.83% | 82.10% | 83.04% | 85.06% | |
| Mean | 86.73% | 88.33% | 88.24% | 87.45% | 88.35% | 89.61% | |
| 3% | A | 92.28% | 93.68% | 93.77% | 93.91% | 94.23% | 95.08% |
| B | 85.30% | 86.84% | 87.04% | 86.89% | 86.57% | 87.62% | |
| C | 79.47% | 82.02% | 83.22% | 82.16% | 83.01% | 84.41% | |
| Mean | 85.68% | 87.51% | 88.01% | 87.65% | 87.94% | 89.04% | |
| 5% | A | 91.36% | 91.03% | 91.14% | 91.09% | 91.74% | 93.86% |
| B | 84.89% | 84.47% | 84.66% | 84.82% | 84.96% | 86.68% | |
| C | 78.55% | 80.10% | 80.23% | 80.34% | 80.08% | 83.71% | |
| Mean | 84.93% | 85.20% | 85.34% | 85.41% | 85.59% | 88.08% | |
| 7% | A | 89.62% | 90.02% | 90.91% | 90.54% | 90.74% | 92.95% |
| B | 84.01% | 83.36% | 83.82% | 83.57% | 84.10% | 85.45% | |
| C | 77.86% | 79.03% | 79.65% | 79.66% | 80.12% | 82.79% | |
| Mean | 83.83% | 84.14% | 84.79% | 84.59% | 84.99% | 87.06% | |
| 9% | A | 85.76% | 88.44% | 88.62% | 88.79% | 89.76% | 91.87% |
| B | 83.79% | 81.45% | 81.89% | 81.63% | 82.30% | 83.67% | |
| C | 77.23% | 77.72% | 77.79% | 77.87% | 78.31% | 81.32% | |
| Mean | 82.26% | 82.54% | 82.77% | 82.76% | 83.46% | 85.62% |
FIGURE 6JS indicator drop rate of each algorithm.
FIGURE 7DSC index drop rate of each algorithm.