Literature DB >> 29018282

Emerging roles of linker histones in regulating chromatin structure and function.

Dmitry V Fyodorov1, Bing-Rui Zhou2, Arthur I Skoultchi1, Yawen Bai2.   

Abstract

Together with core histones, which make up the nucleosome, the linker histone (H1) is one of the five main histone protein families present in chromatin in eukaryotic cells. H1 binds to the nucleosome to form the next structural unit of metazoan chromatin, the chromatosome, which may help chromatin to fold into higher-order structures. Despite their important roles in regulating the structure and function of chromatin, linker histones have not been studied as extensively as core histones. Nevertheless, substantial progress has been made recently. The first near-atomic resolution crystal structure of a chromatosome core particle and an 11 Å resolution cryo-electron microscopy-derived structure of the 30 nm nucleosome array have been determined, revealing unprecedented details about how linker histones interact with the nucleosome and organize higher-order chromatin structures. Moreover, several new functions of linker histones have been discovered, including their roles in epigenetic regulation and the regulation of DNA replication, DNA repair and genome stability. Studies of the molecular mechanisms of H1 action in these processes suggest a new paradigm for linker histone function beyond its architectural roles in chromatin.

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Year:  2017        PMID: 29018282      PMCID: PMC5897046          DOI: 10.1038/nrm.2017.94

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  150 in total

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Authors:  Anton Eberharter; Peter B Becker
Journal:  EMBO Rep       Date:  2002-03       Impact factor: 8.807

2.  Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.

Authors:  Margot P Scheffer; Mikhail Eltsov; Achilleas S Frangakis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome.

Authors:  Sajad Hussain Syed; Damien Goutte-Gattat; Nils Becker; Sam Meyer; Manu Shubhdarshan Shukla; Jeffrey J Hayes; Ralf Everaers; Dimitar Angelov; Jan Bednar; Stefan Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

5.  The rhox homeobox gene cluster is imprinted and selectively targeted for regulation by histone h1 and DNA methylation.

Authors:  James A Maclean; Anilkumar Bettegowda; Byung Ju Kim; Chih-Hong Lou; Seung-Min Yang; Anjana Bhardwaj; Sreenath Shanker; Zhiying Hu; Yuhong Fan; Sigrid Eckardt; K John McLaughlin; Arthur I Skoultchi; Miles F Wilkinson
Journal:  Mol Cell Biol       Date:  2011-01-18       Impact factor: 4.272

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 7.  Multifunctionality of the linker histones: an emerging role for protein-protein interactions.

Authors:  Steven J McBryant; Xu Lu; Jeffrey C Hansen
Journal:  Cell Res       Date:  2010-03-23       Impact factor: 25.617

8.  Histone H1 binding is inhibited by histone variant H3.3.

Authors:  Ulrich Braunschweig; Greg J Hogan; Ludo Pagie; Bas van Steensel
Journal:  EMBO J       Date:  2009-10-15       Impact factor: 11.598

9.  On the structure and dynamics of the complex of the nucleosome and the linker histone.

Authors:  Georgi V Pachov; Razif R Gabdoulline; Rebecca C Wade
Journal:  Nucleic Acids Res       Date:  2011-02-25       Impact factor: 16.971

10.  The chromatin architectural proteins HMGD1 and H1 bind reciprocally and have opposite effects on chromatin structure and gene regulation.

Authors:  Narasimharao Nalabothula; Graham McVicker; John Maiorano; Rebecca Martin; Jonathan K Pritchard; Yvonne N Fondufe-Mittendorf
Journal:  BMC Genomics       Date:  2014-02-01       Impact factor: 3.969

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  123 in total

1.  T-cell Responses to TP53 "Hotspot" Mutations and Unique Neoantigens Expressed by Human Ovarian Cancers.

Authors:  Drew C Deniger; Anna Pasetto; Paul F Robbins; Jared J Gartner; Todd D Prickett; Biman C Paria; Parisa Malekzadeh; Li Jia; Rami Yossef; Michelle M Langhan; John R Wunderlich; David N Danforth; Robert P T Somerville; Steven A Rosenberg
Journal:  Clin Cancer Res       Date:  2018-05-31       Impact factor: 12.531

2.  The linker histone H1.2 is a novel component of the nucleolar organizer regions.

Authors:  Junjie Chen; Boon Heng Dennis Teo; Yitian Cai; Seng Yin Kelly Wee; Jinhua Lu
Journal:  J Biol Chem       Date:  2018-01-04       Impact factor: 5.157

3.  Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub.

Authors:  Gavin D Bascom; Christopher G Myers; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

4.  Linker histones as liquid-like glue for chromatin.

Authors:  Eric B Gibbs; Richard W Kriwacki
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-02       Impact factor: 11.205

Review 5.  Significance of avian linker histone (H1) polymorphic variation.

Authors:  Andrzej Kowalski
Journal:  J Biosci       Date:  2018-09       Impact factor: 1.826

Review 6.  The roles of histone variants in fine-tuning chromatin organization and function.

Authors:  Sara Martire; Laura A Banaszynski
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-14       Impact factor: 94.444

7.  A Robust Method for the Purification and Characterization of Recombinant Human Histone H1 Variants.

Authors:  Adewola Osunsade; Nicholas A Prescott; Jakob M Hebert; Devin M Ray; Yazen Jmeian; Ivo C Lorenz; Yael David
Journal:  Biochemistry       Date:  2019-01-08       Impact factor: 3.162

Review 8.  Pioneer Transcription Factors Initiating Gene Network Changes.

Authors:  Kenneth S Zaret
Journal:  Annu Rev Genet       Date:  2020-09-04       Impact factor: 16.830

9.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

10.  Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.

Authors:  Fanfan Hao; Kevin J Murphy; Tomoya Kujirai; Naoki Kamo; Junko Kato; Masako Koyama; Akimitsu Okamato; Gosuke Hayashi; Hitoshi Kurumizaka; Jeffrey J Hayes
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

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