| Literature DB >> 34700372 |
Maryam Mohammadi1, Ali Salehzadeh1, Soheila Talesh Sasani2, Alireza Tarang3.
Abstract
Background: Single nucleotide polymorphisms result in dysregulation of the proto-oncogene TCF3 gene, which is associated with the development, metastasis, and chemoresistance of different malignancies.Entities:
Keywords: Breast cancer; Gastric cancer; MicroRNA; TCF3
Mesh:
Substances:
Year: 2022 PMID: 34700372 PMCID: PMC8784898 DOI: 10.52547/ibj.26.1.53
Source DB: PubMed Journal: Iran Biomed J ISSN: 1028-852X
Fig. 1Sequencing chromatogram of rs72618599 heterozygous genotype for TCF3 gene
Fig. 2Heatmap of correlation among the samples of GSE10810 dataset. The Figure shows the high quality of the samples because both the control samples and tumor samples are correlated
Fig. 4.Volcano plot showing the differentially expressed genes in the GSE10810 dataset. This plot was drawn by the logFC and -log10 (adj p) of genes. Up-regulation of TCF3 is demonstrated by the black point
Fig. 5GSEA analysis, suggesting the involvement of differentially expressed genes in pyruvate metabolism and adipocytokine signaling pathways
Genotype and allele frequency of rs72618599 polymorphism among the patients (BC and GC) and healthy controls
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| BC | Cases | 48 (39.0) | 30 (24.4) | 45 (36.6) | 126 (51.2) | 120 (48.8) | |
| Controls | 63 (47.7) | 27 (20.5) | 42 (31.8) | 153 (58.0) | 111 (42.0) | ||
| χ2 = 1.97, | χ2 = 2.33, | ||||||
| GC | Cases | 72 (54.5) | 40 (30.3) | 20 (15.2) | 184 (69.7) | 80 (30.3) | |
| Controls | 28 (53.9) | 10 (19.2) | 14 (26.9) | 66 (63.5) | 38 (36.5) | ||
| χ2 = 4.48, | χ2 = 2.33, | ||||||
Genotype and allele frequency of rs72618599 SNP in relation to clinical features of GC patients
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| Blood group | 0.026a | 0.554 | |||||||
| A+ | 46 (39.66) | 24 (40.0) | 20 (50.0) | 2 (12.5) | 92 (39.66) | 68 (42.5) | 24 (33.3) | ||
| B+ | 20 (17.24) | 12 (20.0) | 4 (10.0) | 4 (25.0) | 40 (17.24) | 28(17.5) | 12 (16.7) | ||
| B- | 2 (1.73) | 0 (0) | 2 (5.0) | 0 (0) | 4 (1.72) | 2 (1.2) | 2 (2.8) | ||
| O+ | 30 (25.86) | 14 (23.3) | 12 (30.0) | 4 (25.0) | 60 (25.86) | 40 (25.0) | 20 (27.8) | ||
| O- | 6 (5.17) | 2 (3.3) | 2 (5.0) | 2 (12.5) | 12 (5.18) | 6 (3.8) | 6 (8.3) | ||
| AB | 12 (10.34) | 8 (13.4) | 0 (0) | 4 (25.0) | 24 (10.34) | 16 (10.0) | 8 (11.1) | ||
| Smoking | 0.364 | 0.314 | |||||||
| Positive | 40 (60.6) | 22 (68.8) | 12 (50.0) | 6 (60.0) | 80 (60.6) | 56 (63.6) | 24 (54.5) | ||
| Negative | 26 (39.4) | 10 (31.2) | 12 (50.0) | 4 (40.0) | 52 (39.4) | 32 (36.4) | 20 (45.5) | ||
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| 0.382 | 0.008a | |||||||
| Positive | 29 (53.7) | 11 (37.9) | 8 (27.6) | 10 (34.5) | 58 (59.79) | 30 (51.7) | 28 (48.3) | ||
| Negative | 25 (46.3) | 11 (44.0) | 12 (48.0) | 2 (8.0) | 39 (40.21) | 23 (59.0) | 16 (41.0) | ||
| Primary tumor status | 0.113 | 0.017a | |||||||
| I | 2 (2.17) | 0 (0) | 0 (0) | 2 (12.5) | 4 (2.17) | 0 (0) | 4 (7.4) | ||
| II | 32 (34.78) | 20 (37.0) | 8 (36.3) | 4 (25.0) | 64 (34.78) | 48 (36.9) | 16 (29.6) | ||
| III | 44 (47.83) | 26 (48.2) | 10(45.5) | 8 (50.0) | 88 (47.83) | 62 (47.7) | 26 (48.2) | ||
| IV | 14 (15.22) | 8 (14.8) | 4 (18.2) | 2 (12.5) | 28 (15.22) | 20 (15.4) | 8 (14.8) | ||
| Lymph node status | 0.023a | 0.017a | |||||||
| 0 | 16 (17.77) | 12 (24.0) | 0 (0) | 4 (25.0) | 32 (16.84) | 24 (19.4) | 8 (12.1) | ||
| I | 32 (35.56) | 18 (36.0) | 8 (33.3) | 6 (37.5) | 74 (38.95) | 44 (35.5) | 30 (45.5) | ||
| II | 24 (26.67) | 8 (16.0) | 10 (41.7) | 6 (37.5) | 48 (25.26) | 26 (21.0) | 22 (33.3) | ||
| III | 18 (20) | 12 (24.0) | 6 (25.0) | 0 (0) | 36 (18.95) | 30 (24.1) | 6 (9.1) | ||
| Tumor stage | 0.150 | 0.105 | |||||||
| I | 14 (11.86) | 8 (11.8) | 2 (6.2) | 4 (22.2) | 28 (11.67) | 18 (10.7) | 10 (13.9) | ||
| II | 24 (20.34) | 14 (20.6) | 6 (18.8) | 4 (22.2) | 48 (20) | 34 (20.2) | 14 (19.4) | ||
| III | 36 (30.51) | 16 (23.5) | 12 (37.5) | 8 (44.4) | 72 (30) | 44 (26.2) | 28 (38.9) | ||
| IV | 44 (37.29) | 30 (44.1) | 12 (37.5) | 2 (11.2) | 92 (38.33) | 72 (42.9) | 20 (27.8) | ||
| Metastasis | 0.067 | 0.044a | |||||||
| Positive | 66 (57) | 36 (52.9) | 18 (52.9) | 12 (85.7) | 132 (56.9) | 90 (52.9) | 42 (67.7) | ||
| Negative | 50 (43) | 32 (47.1) | 16 (47.1) | 2 (14.3) | 100 (43.1) | 80 (47.1) | 20 (32.3) | ||
a p < 0.05
Fig. 6The proposed functional effect of rs72618599 on hsa-miR526b-5p binding to TCF3 3′-UTR
Genotype and allele frequency of rs72618599 SNP in relation to clinical features of BC patients
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| HER2 receptor | 0.745 | 0.364 | |||||||
| HER2(+) | 22 (27.16) | 6 (23.1) | 5 (25.0) | 11 (31.4) | 44 (27.16) | 17 (23.6) | 27 (30.0) | ||
| HER2(+) | 59 (72.84) | 20 (76.9) | 15 (75.0) | 24 (68.6) | 118 (72.84) | 55 (76.4) | 63 (70.0) | ||
| Estrogen receptor | 0.208 | 0.112 | |||||||
| ER(+) | 66 (81.48) | 21 (77.8) | 16 (72.7) | 29 (90.6) | 132 (81.48) | 58 (76.3) | 74 (86.0) | ||
| ER(-) | 15 (18.52) | 6 (22.2) | 6 (27.3) | 3 (9.4) | 30 (18.52) | 18 (23.7) | 12 (14.0) | ||
| Progesterone receptor | 0.438 | 0.123 | |||||||
| PR(+) | 60 (74.07) | 18 (66.7) | 16 (72.7) | 26 (81.2) | 120 (74.07) | 52 (68.4) | 68 (79.1) | ||
| PR(-) | 21 (25.93) | 9 (33.3) | 6 (27.3) | 6 (18.8) | 42 (25.93) | 24 (31.6) | 18 (20.9) | ||
| Tumor stage | 0.007a | 0.000a | |||||||
| I | 21 (18.42) | 3 (6.7) | 6 (21.4) | 12 (29.3) | 42 (18.42) | 12 (10.2) | 30 (27.3) | ||
| II | 18 (15.79) | 6 (13.3) | 3 (10.7) | 9 (22.0) | 36 (15.79) | 15 (12.7) | 21 (19.1) | ||
| III | 15 (13.16) | 6 (13.3) | 1 (3.6) | 8 (19.4) | 30 (13.16) | 13 (11.0) | 17 (15.4) | ||
| IV | 60 (52.63) | 30 (66.7) | 18 (64.3) | 12 (29.3) | 120 (52.63) | 78 (66.1) | 42 (38.2) | ||
| Tumor grade | 0.001a | 0.000a | |||||||
| I | 18 (18.18) | 3 (7.7) | 5 (18.5) | 10 (30.3) | 36 (18.18) | 11 (10.5) | 25 (26.9) | ||
| II | 45 (45.45) | 12 (30.8) | 15 (55.6) | 18 (54.5) | 90 (45.46) | 39 (37.1) | 51 (54.8) | ||
| III | 36 (36.37) | 24 (61.5) | 7 (25.9) | 5 (15.2) | 72 (36.36) | 55 (52.4) | 17 (18.3) | ||
| Metastasis | 0.000a | 0.000a | |||||||
| Positive | 81 (65.85) | 18 (37.5) | 25 (83.3) | 38 (84.4) | 162 (65.85) | 61 (48.4) | 101 (84.2) | ||
| Negative | 42 (34.15) | 30 (62.5) | 5 (16.7) | 7 (15.6) | 84 (34.15) | 65 (51.6) | 19 (15.8) | ||
a p < 0.05