| Literature DB >> 32652893 |
Fei Wang1, Sheng Guo1, Pin Li1.
Abstract
BACKGROUND: Minichromosome maintenance complex component 8 (MCM8) is responsible for homologous recombination and DNA double-strand breaks (DSBs) repair and is the cause of primary ovarian insufficiency (POI), which is seldom diagnosed in adolescents and children.Entities:
Keywords: zzm321990MCM8zzm321990; DNA repair; adolescents; primary ovarian insufficiency; short stature
Mesh:
Substances:
Year: 2020 PMID: 32652893 PMCID: PMC7507566 DOI: 10.1002/mgg3.1396
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Quality control data of whole‐exome sequencing
| Total | |
| Raw reads (All reads) | 88,201,718 |
| QC Fail reads | 4,829,452 |
| Raw data (Mb) | 13318.46 |
| Paired reads | 83,372,266 |
| Mapped data (Mb) | 12153.47 |
| Mapped reads | 83,262,132 |
| Fraction of mapped data | 91.25% |
| Fraction of mapped reads | 99.86% |
| Unique Mapped | 67,963,307 |
| Unique Mapped Reads on Target Regions | 52,665,801 |
| No‐mismatch Mapped | 58,342,073 |
| No‐mismatch Reads on Target Regions | 46,054,616 |
| Mismatch alignment bases rate | 30.02% |
| ≥Q30 bases | 88.83% |
| Target | |
| Target reads | 64,400,519 |
| Fraction of target reads in all reads | 77.24% |
| Fraction on Target Regions Covered by Reads | 99.18% |
| Average depth | 110.564 |
| Coverage (>0x) | 99.18% |
| Coverage (≥4x) | 97.31% |
| Coverage (≥10x) | 95.5% |
| Coverage (≥25x) | 89.22% |
| Coverage (≥50x) | 72.36% |
Clinical and hormonal characteristics of the study participant
| Proband | Proband's Sister | |||
|---|---|---|---|---|
| First visit | Final visit | First visit | Final visit | |
| Age (years) | 13 years | 15 years | 6 years 7 months | 7 years 10 months |
| Height (cm) | 138 | 148.7 | 114.5 | 119 |
| HtSDS | −3.05 | −2.02 | −1.07 | −1.83 |
| Weight (kg) | 36.1 | 39 | 19 | 21.8 |
| Tanner stage | B1, PH1 | B2, PH2 | B1, PH1 | B1, PH1 |
| FSH (mIU/ml) | 86.34 | 103 | 2.51 | 0.74 |
| LH (mIU/ml) | 17.14 | 13.7 | 0.44 | 0.17 |
| E2 (pg/ml) | 77 | 215 | <73 | <73.4 |
| T (ng/ml) | 1.01 | <0.69 | <0.69 | <0.69 |
| AMH (ng/ml) | 0.07 | 0.01 | 0.01 | 0.05 |
| AFP (ng/ml) | 17.32 | 21.22 | 15.02 | 20.32 |
| BA (years) | 10 | 12 | 7 | 8 |
| Ultrasound imaging |
U (10 × 17 × 6 mm) Bilateral ovaries not found |
U (24 × 38 × 19 mm) Bilateral ovaries not found |
U (14 × 20 × 7 mm) ROV (11 × 22× 10 mm) LOV (9 × 21 × 9 mm) |
U (12 × 16 × 4 mm) Bilateral ovaries not visible |
| Karyotype | 46,XX | / | 46,XX | / |
Normal ranges: FSH (mIU/mL)—follicular phase: 3.85–8.78; LH (mIU/ml)—follicular phase: 2.12–10.89; E2 (pg/ml)—follicular phase: 0–447.74; T (ng/ml): 0–2.6; AMH (ng/ml): 0.39–6.67 (0–10 years); 1.52–9.41 (11–18 years); AFP (ng/ml): 0–7.
Abbreviations: AFP, alpha fetoprotein; AMH, anti‐Mullerian hormone; FSH, follicle stimulating hormone; HtSDS, height standard difference score; LH, luteinizing hormone.
Figure 1Ovarian biopsy pathology. (a) Right ovary; (b) Left ovary. Microscopically, in tubal tissue without follicular tissue, only fibrous tissue proliferation exists
Figure 2Family pedigree and MCM8 mutation sequencing. (a) Mutation information of families with MCM8 variants (references NM_001281522.1). Missense mutation (c.724T>C) and compound heterozygous termination mutation (c.1334C>A) in affected individuals (Proband: 13‐year‐old girl; Proband's sister: aged 6 years and 7 months) and the heterozygous mutations from unaffected parents. (b) Protein alignment analysis shows that the cysteine residue at 242 and the serine residue at 445 in MCM8 are conserved across seven species
Figure 3Molecular modeling comparison of wild‐type (a) and mutant‐type (b) MCM8 protein. (a) In the wild‐type protein Cys242 is linked to Gly246 and Glu247 by two H‐bonds. The wild‐type protein has two H‐bonds between Ser445 and Ala454. (b) In the mutant protein Cys242 is predicted to lose one H‐bond between Cys242 and Gly246 due to the substitution of cysteine to arginine at position 242. The mutant protein Ser445 is predicted to lose two H‐bonds due to the translation termination at position Ser445. The sites of 242 and 445 are highlighted in red and yellow frame lines, respectively, and are locally zoomed
Figure 4Dysfunctional DSBs repair in mutants p.S445* and p.C242R. (a) Detection of β‐actin antibody as an internal reference signal. (b) Human cervix carcinoma cell line (HeLa) cells overexpressing wild‐type (WT) or mutant MCM8 (MT) were exposed to MMC for 21 hr, and double‐stranded breaks were induced. The level of γ‐H2AX in cells overexpressing p.S445* and p.C242R was increased compared with that in wild‐type MCM8. After recovery for 2 hr, γ‐H2AX disappeared from WT and MT p.C242R but γ‐H2AX still existed after recovery in the cells overexpressing p.S445*