| Literature DB >> 32635155 |
Nataša Knap1, Miša Korva1, Vladimir Ivović2, Katja Kalan2, Mateja Jelovšek1, Martin Sagadin1, Samo Zakotnik1, Katja Strašek Smrdel1, Jan Slunečko1, Tatjana Avšič-Županc1.
Abstract
West Nile virus (WNV) is a flavivirus transmitted by mosquitoes. Birds are the reservoir for the virus; humans, horses and other mammals are dead-end hosts. Infections caused by WNV in humans can vary from asymptomatic infections to West Nile fever (WNF) or West Nile neuroinvasive disease (WNND). In 1995, a serosurvey was performed in Slovenia on forest workers, and WNV specific IgG antibodies were confirmed in 6.8% of the screened samples, indicating that WNV is circulating in Slovenia. No human disease cases were detected in Slovenia until 2013, when the first case of WNV infection was confirmed in a retrospective study in a 79-year old man with meningitis. In 2018, three patients with WNND were confirmed by laboratory tests, with detection of IgM antibodies in the cerebrospinal fluid of the patients. In one of the patients, WNV RNA was detected in the urine sample. In 2017, 2018 and 2019, a mosquito study was performed in Slovenia. Mosquitoes were sampled on 14 control locations and 35 additional locations in 2019. No WNV was detected in mosquitoes in 2017 and 2019, but we confirmed the virus in a pool of Culex sp. mosquitoes in 2018. The virus was successfully isolated, and complete genome sequence was acquired. The whole genome of the WNV was also sequenced from the patient's urine sample. The whole genome sequences of the WNV virus detected in Slovenian patient and mosquito indicate the virus most likely spread from the north, because of the geographic proximity and because the sequences cluster with the Austrian and Hungarian sequences. A sentinel study was performed on dog sera samples, and we were able to confirm IgG antibodies in 1.8% and 4.3% of the samples in 2017 and 2018, respectively. Though Slovenia is not a highly endemic country for WNV, we have established that the virus circulates in Slovenia.Entities:
Keywords: Slovenia; WNND; WNV; mosquitoes
Mesh:
Substances:
Year: 2020 PMID: 32635155 PMCID: PMC7411925 DOI: 10.3390/v12070720
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Figure 1Mosquito sampling locations in Slovenia. Black dots represent sampling locations in years 2017–2019; grey dots represent additional locations sampled in 2019.
Mosquito species distribution in the three years of the study.
| Mosquito Species | 2017 | 2018 | 2019 |
|---|---|---|---|
| 54.75% | 96.04% | 25.01% | |
| 21.79% | 1.34% | 68.98% | |
| 20.11% | 1.98% | 3.05% | |
| 2.79% | 0.35% | 1.29% | |
| 0.56% | 0.29% | 1.67% |
Figure 2A map of geographic distribution of West Nile virus (WNV) positive patients (cross), mosquito pool (star) and dogs (point) identified in Slovenia in 2018.
Retrospective testing of TBEV negative meningitis/meningoencephalitis cases, older than 60 years.
| Year | Number of Patients Examined * | Period of the Year | ELISA IgG—WNV Reactive | ELISA IgM—WNV Reactive | ELISA—IgG TBE Reactive and ELISA—IgG WNV Reactive |
|---|---|---|---|---|---|
| 2011 | 44 | August–September | 4 | 0 | 4 out of 4 |
| 2012 | 35 | August–September | 0 | 0 | 0 |
| 2013 | 27 | August–September | 3 | 1 | 2 out of 3 |
| 2014 | 145 | January–December | 10 | 0 | 6 out of 10 |
| 2015 | 102 | January–December | 2 | 0 | 2 out of 2 |
| 2016 | 98 | June–September | 6 | 0 | 6 out of 6 |
| 2017 | 84 | June–September | 0 | 0 | 0 |
| 2018 | 126 | June–September | 4 | 2 | 2 out of 4 |
* patients with meningitis/meningoencephalitis that were TBEV IgM TBEV IgM and IgG negative or were only IgG positive.
Figure 3A phylogenetic analysis was performed with IQ-TREE using ultrafast bootstrap approximation [23] under the GTR+F+R2 model (chosen by ModelFinder [24]) on all available full length WNV genomes available in the GenBank on the 25 March 2019. For better visualization of a phylogenetical relatedness of Slovenian WNV strains, a subset of 28 genomes, with emphasis on geographic closeness of the origin countries, was chosen for Figure. Lineage are color coded: red, lineage 1; green, lineage 2 and blue, lineage 3. Both Slovenian isolates (circled in red) belong to the virus lineage 2. The mosquito pool (Ko169/18; GenBank no. MK947396) is phylogenetically closer to the strains circulating in Austria and Czech Republic. The human isolate (NK2950; GenBank no. MK947397) is most closely related to the WNV strain circulating in Hungary in 2017. The first value on the branches represents SH-like approximate likelihood ratio test result in % [25]; second value approximates Bayes test result in % [26], and third value is ultrafast bootstrap approximation [27]. The bar in the legend represents the number of nucleotide substitutions per site alongside the branches.