| Literature DB >> 31340516 |
Friederike Michel1,2, Michael Sieg3, Dominik Fischer4, Markus Keller1, Martin Eiden1, Maximilian Reuschel5, Volker Schmidt6, Rebekka Schwehn5,7, Monika Rinder8, Sylvia Urbaniak9, Kerstin Müller10, Martina Schmoock11,12, Renke Lühken13, Patrick Wysocki14, Christine Fast1, Michael Lierz4, Rüdiger Korbel8, Thomas W Vahlenkamp3, Martin H Groschup1,2, Ute Ziegler15,16.
Abstract
Wild birds play an important role as reservoir hosts and vectors for zoonotic arboviruses and foster their spread. Usutu virus (USUV) has been circulating endemically in Germany since 2011, while West Nile virus (WNV) was first diagnosed in several bird species and horses in 2018. In 2017 and 2018, we screened 1709 live wild and zoo birds with real-time polymerase chain reaction and serological assays. Moreover, organ samples from bird carcasses submitted in 2017 were investigated. Overall, 57 blood samples of the live birds (2017 and 2018), and 100 organ samples of dead birds (2017) were positive for USUV-RNA, while no WNV-RNA-positive sample was found. Phylogenetic analysis revealed the first detection of USUV lineage Europe 2 in Germany and the spread of USUV lineages Europe 3 and Africa 3 towards Northern Germany. USUV antibody prevalence rates were high in Eastern Germany in both years. On the contrary, in Northern Germany, high seroprevalence rates were first detected in 2018, with the first emergence of USUV in this region. Interestingly, high WNV-specific neutralizing antibody titers were observed in resident and short-distance migratory birds in Eastern Germany in 2018, indicating the first signs of a local WNV circulation.Entities:
Keywords: Germany; Usutu virus; West Nile virus; monitoring; wild bird
Year: 2019 PMID: 31340516 PMCID: PMC6669720 DOI: 10.3390/v11070674
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Figure 1Total number of samples (first sample panel) collected in 2017 and 2018 per sampling site divided into the different zoological bird orders (big red stars = main sample collectors, small red stars = minor sample collectors). The encircled numbers next to the sample collectors allow a geographical allocation to the respective sample collector: ① “Seehundstation Nationalpark-Haus Norden-Norddeich”; ②“Clinic for Small Mammals, Reptiles, and Birds of the University of Veterinary Medicine Hannover”; ③ “Wildpark Schwarze Berge, Rosengarten”; ④ “Department of Veterinary Medicine, Small Animal Clinic of the Freie Universität Berlin; ⑤ “Clinic for Birds and Reptiles (Faculty of Veterinary Medicine) of the Leipzig University”; ⑥ “Clinic for Birds, Reptiles, Amphibians and Fish of the Justus Liebig University Giessen”; ⑦ “Clinic for Birds, Small Mammals, Reptiles and Ornamental Fish, Centre for Clinical Veterinary Medicine of the Ludwig Maximilians University Munich”; ⑧ “Birds of Prey Rehab Center Rhineland”.
Total number of wild bird blood samples investigated between 2017 and 2018 in Germany, divided into bird orders.
| Order | Year 2017 | Year 2018 | Total |
|---|---|---|---|
| Passeriformes | 291 | 219 | 510 |
| Accipitriformes/Falconiformes | 208 | 236 | 444 |
| Strigiformes | 66 | 79 | 145 |
| Anseriformes | 26 | 49 | 75 |
| Columbiformes | 115 | 166 | 281 |
| Apodiformes | 26 | 8 | 34 |
| Charadriiformes | 25 | 49 | 74 |
| Ciconiiformes/Pelicaniformes | 13 | 20 | 33 |
| Gruiformes | 5 | 8 | 13 |
| Piciformes | 47 | 34 | 81 |
| Suliformes | 3 | 0 | 3 |
| Galliformes | 2 | 0 | 2 |
| Podicipediformes | 3 | 2 | 5 |
| Coraciiformes | 5 | 0 | 5 |
| Procellariiformes | 0 | 1 | 1 |
| Cuculiformes | 0 | 1 | 1 |
| Psittaciformes | 0 | 2 | 2 |
Results of quantitative real-time polymerase chain reactions (qRT-PCR) in wild and zoo bird samples of the first sample panel in 2017 and 2018. Positive samples are highlighted in red.
| Order | Common Name | Scientific Name | Migration Pattern | Housing | WNV qRT-PCR no.pos. | USUV qRT-PCR no.pos. | Federal State |
|---|---|---|---|---|---|---|---|
| Passeriformes | Eurasian Blackbird |
| R, P | wild | 0 | SN, ST, BE, HE | |
| Common Starling |
| R, P, S | wild | 0 | HE | ||
| Carrion Crow |
| S | wild | 0 | NRW | ||
| Western Jackdaw |
| R, P | wild | 0 | NRW | ||
| Piciformes | Great Spottet Woodpecker |
| R, P, (S) | wild | 0 | LS | |
| 0/826 | |||||||
| Passeriformes | Eurasian Blackbird |
| R, P | wild | 0 | SN, LS, HE | |
| House Sparrow |
| R | wild | 0 | BW | ||
| Eurasian Bullfinch |
| / | captive | 0 | SN, SH | ||
| Domestic Canary |
| / | captive | 0 | NRW | ||
| Grey-Headed Bullfinch |
| / | captive | 0 | LS | ||
| Song Thrush |
| R, S | wild | 0 | SN | ||
| Common Starling |
| R, P, S | wild | 0 | SN | ||
| Strigiformes | Great Grey Owl |
| / | captive | 0 | BW, HE | |
| Little Owl |
| R | wild | 0 | HE | ||
| Falconiformes | European Kestrel |
| R, P, S | wild | 0 | HE | |
| 0/781 | |||||||
R = resident species, P = partial migrant, S = short distance migrant, / = not applicable (captive birds), SN = Saxony, ST = Saxony-Anhalt, BE = Berlin, HE = Hesse, NRW = North Rhine-Westphalia, LS = Lower Saxony, SH = Schleswig-Holstein, BW = Baden-Wurttemberg.
Dead birds of the second sample panel tested positive for Usutu virus (USUV) infection by qRT-PCR in 2017.
| Order | Common Name | Scientific Name | Migration Pattern | Housing | USUV RNA Positive Birds |
|---|---|---|---|---|---|
| Passeriformes | Eurasian Blackbird |
| R, P | wild | 94 |
| Song Trush |
| R, L | wild | 1 | |
| Golden-breasted Starling |
| / | captive | 1 | |
| Strigiformes | Great Grey Owl |
| / | captive | 2 |
| Northern Hawk-owl |
| / | captive | 2 | |
R = resident species, P = partial migrant, S = short distance migrant, L = long distance migrant, / = not applicable (captive birds).
Figure 2Phylogeny of the Usutu virus (USUV) isolates in 2017 and 2018. Sequences detected in 2017 and 2018 are highlighted in red. Taxon information includes the GenBank accession numbers, detection years, and countries of origin of the viruses. Scale bars indicate the mean number of nucleotide substitutions per site. Some samples had identical partial sequences, but are also depicted as they are from a different geographic region or year, respectively: (* = sequence identical to MK956004; # = sequence identical to MK956046; ° = sequence identical to MK956045; ~ = sequence identical to MK956044) (A) Phylogenetic tree of the detected USUV strains from Germany and Europe constructed from partial envelope genome nucleotide sequences (1066 nucleotides) sequenced by the FLI (Friedrich-Loeffler-Institute). (B) Phylogenetic tree of the detected USUV strains from Germany and Europe constructed from partial nucleotide sequences for the envelope protein (726 nucleotides) sequenced by the University of Leipzig.
Figure 3Distribution of the different USUV lineages in 2017 and 2018 (depicted on district level). For sequencing, both the birds of our live bird sample panel and the dead birds submitted to the National reference laboratory were used. The total number of birds sequenced per district is also embedded in this map.
WNV- and USUV-positive neutralization assay results from wild bird serum samples Region A—Northern Germany.
| Sample Collector | Order | Common Name | Scientific Name | Migration Pattern | No. Samples Tested | WNV Pos. (ND50) | USUV Pos. (ND50) |
|---|---|---|---|---|---|---|---|
| ① | Piciformes | Great Spottet Woodpecker |
| R, P, (S) | 7 | 0 | |
| ② | Accipitriformes | Common Buzzard |
| R, P, S | 11 | 0 | |
| ② | Columbiformes | Common Wood Pigeon |
| R, P, S | 29 | 0 | |
| Feral Pigeon | R, (P) | 14 | 1 (10) | ||||
| ② | Charadriiformes | Eurasian Woodcock |
| R, S | 1 (10) | ||
| ② | Suliformes | Great Cormorant |
| R, S | 1 | 0 | |
| ① | Passeriformes | Eurasian Blackbird |
| R, P | 16 | 1 (10), 1 (20), 1 (60) | |
| ① | Carrion Crow |
| R, P | 14 | 0 | ||
| ① | Spotted Flycatcher |
| L | 2 | 0 | ||
| ① | Accipitriformes | Northern Goshawk |
| R, P | 1 | 0 | |
| ① | Common Buzzard |
| R, P, S | 6 | 0 | ||
| ① | Anseriformes | Northern Mallard Duck |
| R, P, S | 5 | 1 (20) | |
| ① | Ciconiiformes/ | Northern Gannet |
| S, L | 6 | 0 | |
| ② | Passeriformes | Eurasian Blackbird |
| R, P | 9 | 1 (120), 1 (240) | |
| ② | Eurasian Jay |
| R, P | 3 | |||
| ② | Common Magpie |
| R | 5 | 0 | ||
| ② | Common Starling |
| R, P, S | 2 | 1 (40) | ||
| ② | Accipitriformes | Common Buzzard |
| R, P, S | 11 | 0 | |
| ② | Columbiformes | Common Wood Pigeon |
| R, P, S | 48 | 1 (10), 1 (15), 1 (20), 1 (40) | |
| ② | Apodiformes | Common Swift |
| L | 1 | 0 | |
| ③ | Strigiformes | Eurasian Eagle Owl |
| zoo bird | 5 | 0 | |
| ③ | Snowy Owl |
| zoo bird | 2 | 0 | ||
| ③ | Ural Owl |
| zoo bird | 2 | 1 (30) | ||
| ③ | Northern Long-eared Owl |
| zoo bird | 3 | 1 (20) | ||
| ③ | Eurasian Tawny Owl |
| zoo bird | 2 | 1 (10), 1 (60) | ||
R = resident species, P = partial migrant, S = short distance migrant, L = long distance migrant, (For details regarding the sample collectors see Section 2.1 and for ND50 Section 2.4).
WNV- and USUV-positive neutralization assay results from wild bird serum samples Region B—Eastern Germany.
| Sample Collector | Order | Common Name | Scientific Name | Migration Pattern | No. Samples Tested | WNV Pos. (ND50) | USUV Pos. (ND50) |
|---|---|---|---|---|---|---|---|
| ④ | Charadriiformes | Eurasian Woodcock |
| R, S | 7 | 2 (10), 1 (20) | |
| ④ | Ciconiiformes/Pelicaniformes | Grey Heron |
| R, P, S | 1 | 0 | |
| ⑤ | Passeriformes | Eurasian Blackbird |
| R, P | 11 | 1 (10), 1 (15), 1 (20) | |
| ⑤ | Falconiformes | European Kestrel |
| R, P, S | 5 | 0 | |
| ⑤ | Columbiformes | Common Wood Pigeon |
| R, P, S | 9 | 3 (10), 1 (60) | |
| ⑤ | Ciconiiformes/Pelicaniformes | White Stork |
| L | 1 | 1 (20) | |
| ④ | Passeriformes | Common Magpie |
| R | 1 | 0 | |
| ④ | Accipitriformes | Northern Goshawk |
| R, P | 2 | 0 | |
| ④ | White-tailed Eagle |
| R, P | 5 | 0 | ||
| ④ | Common Buzzard |
| R, P, S | 7 | 1 (10) | ||
| ④ | Falconiformes | European Kestrel |
| R, P, S | 1 | 1 (40) | |
| ④ | Strigiformes | Northern Long-eared Owl |
| R, P, S | 2 | 1 (10) | |
| ④ | Columbiformes | Common Wood Pigeon |
| R, P, S | 2 | 0 | |
| ④ | Anseriformes | Northern Mallard Duck |
| R, P, S | 2 | 0 | |
| ④ | Apodiformes | Common Swift |
| L | 1 | 1 (10) | |
| ④ | Charadriiformes | Eurasian Woodcock |
| R, S | 12 | 0 | |
| ⑤ | Passeriformes | Eurasian Blackbird |
| R, P | 3 | 0 | |
| ⑤ | Carrion Crow |
| P, S | 5 | 1 (40) | ||
| ⑤ | Accipitriformes | Common Buzzard |
| R, P, S | 2 | 0 | |
| ⑤ | Columbiformes | Common Wood Pigeon |
| R, P, S | 7 | ||
R = resident species, P = partial migrant, S = short distance migrant, L = long distance migrant, (For details regarding the sample collectors see Section 2.1 and for ND50 Section 2.4).
WNV- and USUV-positive neutralization assay results from wild bird serum samples Region C—Central and Southern Germany.
| Sample Collector | Order | Common Name | Scientific Name | Migration Pattern | No. Samples Tested | WNV Pos. (ND50) | USUV Pos. (ND50) |
|---|---|---|---|---|---|---|---|
| ⑤ | Passeriformes | Eurasian Blackbird |
| R, P | 4 | 1 (75), 1 (190) | |
| ⑥ | Passeriformes | Eurasian Blackbird |
| R, P | 23 | 0 | |
| ⑥ | Eurasian Blue Tit |
| R | 2 | 0 | ||
| ⑥ | Thrush | R, S | 10 | ||||
| ⑥ | Common Starling |
| R, P, S | 5 | 0 | ||
| ⑥ | Accipitriformes | Long-legged Buzzard |
| zoo bird | 2 | 0 | |
| ⑥ | Common Buzzard |
| R, P, S | 24 | |||
| ⑥ | African Sea Eagle |
| zoo bird | 3 | 0 | ||
| ⑥ | Black Kite |
| L | 2 | 0 | ||
| ⑥ | Falconiformes | European Kestrel |
| R, P, S | 21 | 0 | |
| ⑥ | Columbiformes | Common Wood Pigeon |
| R, P, S | 16 | 0 | |
| ⑥ | Apodiformes | Common Swift |
| L | 10 | ||
| ⑥ | Ciconiiformes/Pelicaniformes | Grey Heron |
| R, P, S | 7 | 1 (15) | |
| ⑥ | Stork sp. | L | 1 | 0 | |||
| ⑦ | Gruiformes | Eurasian coot |
| P, S | 1 | 1 (15) | |
| ⑧ | Accipitriformes | Common Buzzard |
| R, P, S | 13 | ||
| ⑧ | Northern Goshawk |
| R, P | 2 | 0 | ||
| ⑧ | Strigiformes | Eurasian Tawny Owl |
| R | 2 | 0 | |
| ⑧ | Gruiformes | Eurasian Coot |
| P, S | 1 | 0 | |
| ⑥ | Passeriformes | Eurasian Blackbird |
| R, P, S | 19 | ||
| ⑥ | Common Magpie |
| R | 6 | 0 | ||
| ⑥ | Carrion Crow |
| P, S | 9 | 0 | ||
| ⑥ | European Robin |
| P | 2 | 0 | ||
| ⑥ | Accipitriformes/Falconiformes | Black-chested Buzzard-eagle |
| zoo bird | 1 | 0 | |
| ⑥ | Griffon Vulture |
| zoo bird | 4 | 0 | ||
| ⑥ | Northern Goshawk |
| R, P | 12 | 0 | ||
| ⑥ | Eastern Imperial Eagle |
| zoo bird | 1 | 0 | ||
| ⑥ | Common Buzzard |
| R, P, S | 25 | 0 | ||
| ⑥ | Western Marsh Harrier |
| L | 6 | |||
| ⑥ | Southern Crested Caracara |
| zoo bird | 0 | |||
| ⑥ | Rüppell′s Vulture |
| zoo bird | 1 | 1 (15) | ||
| ⑥ | Golden Eagle |
| zoo bird | 4 | 0 | ||
| ⑥ | White-backed Vulture |
| zoo bird | 1 | 0 | ||
| ⑥ | Eurasian Hobby |
| L | 2 | 0 | ||
| ⑥ | European Kestrel |
| R, P, S | 14 | 0 | ||
| ⑥ | Strigiformes | Northern Long-eared Owl |
| R, P, S | 4 | 0 | |
| ⑥ | Columbiformes | Common Wood Pigeon |
| R, P, S | 21 | 1 (40) | |
| ⑥ | Feral Pigeon | R, (P) | 13 | 0 | |||
| ⑥ | Anseriformes | Mute Swan |
| R, P, S | 9 | ||
| ⑥ | Egyptian Goose |
| R (Neozoa) | 2 | 0 | ||
| ⑥ | Ciconiiformes/Pelicaniformes | Grey Heron |
| R, P, S | 8 | 0 | |
| ⑥ | Cuculiformes | Common Cuckoo |
| L | 1 | 0 | |
| ⑥ | Piciformes | Great Spottet Woodpecker |
| R, P, (S) | 6 | 0 | |
| ⑦ | Columbiformes | Feral Pigeon | R, (P) | 16 | 0 | ||
| ⑧ | Accipitriformes | Common Buzzard |
| R, P, S | 3 | 0 | |
| ⑧ | Falconiformes | European Kestrel |
| R, P, S | 1 | 0 | |
R = resident species, P = partial migrant, S = short distance migrant, L = long distance migrant, (For details regarding the sample collectors see Section 2.1 and for ND50 Section 2.4).
No differentiation between WNV and USUV by neutralization assay possible.
| Sample Collector | Year | Common Name | Scientific Name | WNV pos. (ND50) | USUV pos. (ND50) |
|---|---|---|---|---|---|
| ② | 2017 | Common Wood Pigeon |
| 1 (10) | 1 (15) |
| ② | 2017 | Common Wood Pigeon |
| 1 (10) | 1 (15) |
| ⑤ | 2017 | Eurasian Blackbird |
| 1 (15) | 1 (20) |
| ⑤ | 2017 | Eurasian Blackbird |
| 1 (160) | 1 (240) |
| ⑥ | 2017 | Northern Goshawk |
| 1 (15) | 1 (10) |
| ⑥ | 2017 | European Kestrel |
| 1 (15) | 1 (15) |
| ⑥ | 2017 | Snowy owl |
| 1 (10) | 1 (10) |
| ① | 2018 | Eurasian Blackbird |
| 1 (30) | 1 (40) |
| ⑥ | 2018 | Eurasian Blackbird |
| 1 (30) | 1 (30) |
| ⑥ | 2018 | Eurasian Blackbird |
| 1 (10) | 1 (10) |
| ⑥ | 2018 | Eurasian Blackbird |
| 1 (20) | 1, (15) |
| ⑥ | 2018 | House Sparrow |
| 1 (60) | 1 (80) |
| ⑥ | 2018 | Great Grey Owl |
| 1 (30) | 1 (20) |
| ⑥ | 2018 | Stork sp. | 1 (10) | 1 (15) |
Figure 4USUV detection in dead birds (second sample panel) in 2017 (red areas = USUV-positive birds detected for the first time in 2017, yellow areas = USUV-positive birds detected before and in 2017, grey areas = distribution of USUV-positive birds in the previous years, but no cases in 2017).