| Literature DB >> 16704810 |
Tamás Bakonyi1, Eva Ivanics, Károly Erdélyi, Krisztina Ursu, Emöke Ferenczi, Herbert Weissenböck, Norbert Nowotny.
Abstract
Two different West Nile virus (WNV) strains caused lethal encephalitis in a flock of geese and a goshawk in southeastern Hungary in 2003 and 2004, respectively. During the outbreak in geese, 14 confirmed human cases of WNV encephalitis and meningitis were reported in the same area. Sequencing of complete genomes of both WNV strains and phylogenetic analyses showed that the goose-derived strain exhibits closest genetic relationship to strains isolated in 1998 in Israel and to the strain that emerged in 1999 in the United States. WNV derived from the goshawk showed the highest identity to WNV strains of lineage 2 isolated in central Africa. The same strain reemerged in 2005 in the same location, which suggests that the virus may have overwintered in Europe. The emergence of an exotic WNV strain in Hungary emphasizes the role of migrating birds in introducing new viruses to Europe.Entities:
Mesh:
Year: 2006 PMID: 16704810 PMCID: PMC3294705 DOI: 10.3201/eid1204.051379
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Oligonucleotide primers used for sequencing West Nile virus (WNV) strain Goose-Hungary/03*
| Name* | Sequence 5´ to 3´ | Product length (bp) |
|---|---|---|
| WNVI 1f | AGTAGTTCGCCTGTGTGAGC | 388 |
| WNVI 388r | GCCGATTGATAGCACTGGTC | |
| WNVI 82f | AGCACGAAGATCTCGATGTC | 986 |
| WNVI 1067r | ATGATAGTCACGCAGCTGTC | |
| WNVI 1005f | AGGAGTGTCTGGAGCAACAT | 995 |
| WNVI 1999r | AAGCCACTGACGAGATAGGA | |
| WNVI 1864f | ACAACCTATGGCGTCTGTTC | 1,049 |
| WNVI 2912r | CGATTCTGAGTCGGACATTC | |
| WNVI 2847f | AGAACTCGCCAACAACACCT | 774 |
| WNVI 3620r | ATCTTGGCTGTCCACCTCTT | |
| WNVI 3502f | CTCGTGCAGTCACAAGTGAA | 957 |
| WNVI 4458r | ATCAAGCCGCACATCAACTC | |
| WNVI 4524f | GGTCTGTCTCGCGATTAGTG | 500 |
| WNVI 5023r | GTGAGCCTGATGTTCCAGTG | |
| WNVI 5300f | CTGAGATGGCTGAAGCACTG | 858 |
| WNVI 6157r | TCTCACGCTCTGGTTGGTAG | |
| WNVI 5303f | AGATGGCTGAAGCACTGAGA | 162 |
| WNVI 5464r | CCATCACGAACAGGTTGTAG | |
| WNVI 6009f | GTCGCAAGTTGGTGATGAGT | 228 |
| WNVI 6236r | TCTGCAGTCCTCAACAGTTC | |
| WNVI 6119f | ACGGACTGATCGCTCAATTC | 1,151 |
| WNVI 7269r | AAGGAGTGTTGCCGCTGTTA | |
| WNVI 7177f | TTCGTCGATGTTGGAGTGTC | 993 |
| WNVI 8169r | CCGAATCGTCCTATGCTCTT | |
| WNVI 8112f | TTGTGACATCGGAGAGTCCT | 1068 |
| WNVI 9179r | AGCCAGTGGTCTTCATTGAG | |
| WNVI 8950f | GCCAGAGAAGCAGTTGAAGA | 305 |
| WNVI 9254r | CCAACTTCACGCAGGATGTA | |
| WNVI 9134f | TTCTGGAGTTCGAGGCTCTG | 1,186 |
| WNVI 10319r | CCGATGATTGCTCTGACTTG | |
| WNVI 9445f | GGAAGAACCGTCATGGATGT | 466 |
| WNVI 9910r | GAGCTCTGCCTACCAATTCA | |
| WNVI 10524f | CGCCACCGGAAGTTGAGTAG | 501 |
| WNVI 11024r | CTGTGTTCTCGCACCACCAG |
*Numbers refer to nucleic acid positions at the 5´-end of the primers, according to the complete genomic sequence of the closely related WNV strain WN NY 2000-crow3356 (AF404756 27; ). f, forward (genomic) primer; r, reverse (complementary) primer.
Oligonucleotide primers used for sequencing of West Nile virus (WNV) strain goshawk-Hungary/04
| Name* | Sequence 5´ to 3´ | Product length (bp) |
|---|---|---|
| WNVII 1f | AGTAGTTCGCCTGTGTGAGC | 200 |
| WNVII 200r | AGCATAGCCCTCTTCAGTCC | |
| WNVII 81f | TGGCACGAAGATCTCGATGT | 874 |
| WNVII 954r | TGCCACCAGGAGCAATAGAA | |
| WNVII 870f | CCTCGTTGCAGCTGTCATTG | 761 |
| WNVII 1630r | TCCATGGCAGGTTCAGATCC | |
| WNVII 1584f | CTTCCTGGTTCACCGAGAAT | 908 |
| WNVII 2491r | CTTGCCTGCCAATGTCAATG | |
|
| CTCTTTGGRGGRATGTCHTG | 818 |
|
| GTGCADGATTTKACYTCTCC | |
| WNVII 3027f | CAACATGGCTGTGCATAGTG | 673 |
| WNVII 3699r | GCCGACGAGAATGACATATC | |
|
| AAGAGGTGGACGGCCARRHT | 1,152 |
|
| GTGTGCCAYAGYGTGTGGAA | |
| WNVII 3861f | GGCTTACTATGACGCCAAGA | 594 |
| WNVII 4454r | CCATCATCATCCAGCCTAAC | |
|
| ATGTTYGCCATYGTWGGDGG | 1,142 |
|
| TGGCACATSACATCMACKAT | |
| WNVII 5294f | TTGCTGCTGAGATGTCTGAG | 324 |
| WNVII 5617r | TGTCCGAGATAGGAGCATTG | |
|
| ATGGATGAAGCYCATTTCAC | 337 |
|
| GGTAYTCYGTMTCATAGGAC | |
| WNVII 5629f | GCCTGGAACACTGGATATGA | 616 |
| WNVII 6245r | TAAGCGAGCCAGACTGGTAA | |
| WNVII 6127f | TATCAGCCTGAGCGCGAGAA | 932 |
| WNVII 7058r | ACGGCTGTCGTTACGGCATA | |
| WNVII 6935f | ATGACATTGGCAGCCTGTTG | 672 |
| WNVII 7606r | ATCCTCCTCGCATGATGTGA | |
| WNVII 7505f | GAGAGGCTGGAATTCTGACT | 653 |
| WNVII 8158r | GTTCTTCTACCTCGGCACTT | |
| WNV 8078f | CATCAGAAGCGAGCGACACA | 744 |
| WNV 8821r | ACAGCCAGTTCGTGGTCTCA | |
| WNV 8723f | TCGGTCAACAACGAGTGTTC | 739 |
| WNV 9461r | GAGATGACGTCCATCACAGT | |
| WNV 9368f | TAGCGCGGTCCATCATCGAG | 733 |
| WNV 10100r | CCAACGTTCGACCGGAGTCT | |
| WNVII 10023f | CTGTTCCGCTGTGCCTGTCA | 519 |
| WNVII 10541r | CGTGGATCACCTCGCAGCTT | |
|
| TACAACATGATGGGVAARAGAGAGA | 1,061 |
|
| AGCATGTCTTCYGTBGTCATCCAYT | |
| WNV 10460f | GCCACCGGAAGTTGAGTAGA | 430 |
| WNV 10889r | GCTGGTTGTGCAGAGCAGAA | |
|
| GWAAGCCTCYCAGAACCGTCTCGGAAG | 419 |
|
| AGATCCTGTGKTCTWSYYCMCCAYCAG |
*Numbers refer to nucleic acid positions at the 5´-end, according to the complete genomic sequence of the closely related lineage 2 WNV strain B956 (NC_001563). Universal, Japanese encephalitis virus–group specific primers are indicated in italics (). f, forward (genomic) primer; r, reverse (complementary) primer. Usu, Usutu.
West Nile virus strains included in the phylogenetic analysis
| Name | Code | Accession no. | Isolation | |||
|---|---|---|---|---|---|---|
| Year | Host | Origin | Lineage, clade | |||
| WNV HNY1999 | NY99a | AF202541 | 1999 | Human | New York, USA | 1a |
| WNV NY99flamingo38299 | NY99b | AF196835 | 1999 | Flamingo | New York, USA | 1a |
| WNV IS98STD | Is98 | AF481864 | 1998 | Stork | Israel | 1a |
| WNV goose-Hungary/03 | Hu03 | DQ118127 | 2003 | Goose | Hungary | 1a |
| WNV Italy1998Equine | It98 | AF404757 | 1998 | Horse | Italy | 1a |
| WNV RO9750 | Ro96 | AF260969 | 1996 |
| Romania | 1a |
| WNV VLG4 | Rus99a | AF317203 | 1999 | Human | Volgograd, Russia | 1a |
| WNV LEIV-Vlg99-27889 | Rus99b | AY277252 | 1999 | Human | Volgograd, Russia | 1a |
| WNV PaH001 | Tu97 | AY268133 | 1997 | Human | Tunisia | 1a |
| WNV PaAn001 | Fr00 | AY268132 | 2000 | Horse | France | 1a |
| WNV Eg 101 | Eg51 | AF260968 | 1951 | Human | Egypt | 1a |
| WNV Chin-01 | Chin01 | AY490240 | 1950s | ? | Russia | 1a |
| WNV Kunjin MRM61C | Kunjin | D00246 | 1960 |
| Australia | 1b |
| WNV Sarafend | Sarafend | AY688948 | Laboratory strain | 2 | ||
| WNV B956 (WNFCG) | Ug37 | NC_001563 | 1937 | Human | Uganda | 2 |
| WNV goshawk-Hungary/04 | Hu04 | DQ116961 | 2004 | Goshawk | Hungary | 2 |
| Rabensburg virus (97-103) | RabV | AY765264 | 1997 |
| Czech R. | 3? |
| WNV LEIV-Krnd88-190 | Rus98 | AY277251 | 1998 |
| Caucasus, Russia (Georgia?) | 4? |
FigurePhylogenetic tree based on the complete nucleotide sequences of selected West Nile virus strains demonstrating the genetic relatedness of these strains (abbreviations are listed in Table). Boxes indicate different lineages and clades. The Hungarian strains reported in this article are highlighted with gray background). RabV, Rabensburg virus; JEV, Japanese encephalitis virus. Scale bar depicts degree of relatedness.