| Literature DB >> 32618260 |
Laura McArthur1, Dhanasekaran Sakthivel2, Ricardo Ataide3,4, Felicia Chan5, Jack S Richards2,3,6, Charles A Narh2,3,6.
Abstract
Our understanding of SARS-CoV-2, the virus responsible for coronavirus disease 2019 (COVID-19), its clinical manifestations, and treatment options continues to evolve at an unparalleled pace. This review sought to summarize the key literature regarding transmission, case definitions, clinical management, and the burden of COVID-19. Our review of the literature showed that SARS-CoV-2 was mainly transmitted via inhalation of respiratory droplets containing the virus and had a mean incubation period of 4-6 days. The commonly reported symptoms were fever (75.3% ± 18.7%) and cough (62.6% ± 17.7%) across the spectrum of clinical disease-mild, moderate, severe, and critical, but with the disease phenotype varying with severity. Categorization of these cases for home care or hospital management needs to be defined, with risk stratification accounting for the age of the patient and the presence of underlying comorbidities. The case definitions varied among countries, which could have contributed to the differences in the case fatality rates among affected countries. The severity and risk of death due to COVID-19 was associated with age and underlying comorbidities. Asymptomatic cases, which constitute 40-80% of COVID-19 cases are a considerable threat to control efforts. The presence of fever and cough may be sufficient to warrant COVID-19 testing, but using these symptoms in isolation will miss a proportion of cases. A clear definition of a COVID-19 case is essential for the management, treatment, and tracking of clinical illness, and to inform the quarantine measures and social distancing that can help control the spread of SARS-CoV-2.Entities:
Mesh:
Year: 2020 PMID: 32618260 PMCID: PMC7410412 DOI: 10.4269/ajtmh.20-0564
Source DB: PubMed Journal: Am J Trop Med Hyg ISSN: 0002-9637 Impact factor: 2.345
Figure 1.Identification and management of COVID-19 cases. Monitoring for suspected cases of COVID-19 is crucial to halt the transmission of SARS-CoV-2. Suspected cases who have had contact with an infected person (asymptomatic/symptomatic) need to be isolated and screened for SARS-CoV-2 using sensitive nucleic acid amplification tests (NAATs). It is recommended that infected individuals who are asymptomatic self-isolate and be monitored at home. Individuals who progress to develop clinical disease can be triaged into mild/moderate and severe/critical case for clinical management/treatment. However, the presence of comorbidities and the age of the patient can be used to triage patients for hospitalization or home care. Once recovered, patients should be monitored because they could still be infectious.
Figure 2.Commonly reported clinical symptoms of COVID-19. Data were obtained from 21 studies involving COVID-19 patients including children and adults. For the pooled analysis, the mean percentage of patients who developed a particular symptom was plotted with the upper standard error. Fever and cough were the commonly reported symptoms. Data were obtained from published data.[6,10,18,32,34,39,57,59–61,68,69,105,124–129]
Case definitions of COVID-19
| Case definition | Confirmed case | Suspect case | Probable case | Contact | Other relevant defined terms |
|---|---|---|---|---|---|
| WHO[ | A person with laboratory confirmation of SARS-CoV-2 infection regardless of signs/symptoms. | a. Acute respiratory illness (fever and ≥ 1 sign/symptom of respiratory disease) and travel to a region reporting community transmission in 14 days before symptom onset;b. acute respiratory illness and contact with confirmed or probable case in 14 days before symptom onset; orc. severe acute respiratory illness (requiring hospitalization) and the absence of an alternative diagnosis to fully explain the presentation. | a. A suspect case in whom testing is inconclusive orb. a suspect case for whom testing could not be performed. | Experienced any one of the following: | |
| a. face-to-face contact with a within 1 m and for more than 15 minutes;b. direct physical contact with a case;c. direct care for a patient with probable or confirmed COVID-19 disease without using proper personal protective equipment; ord. other situations as indicated by local risk assessments.Note: For confirmed asymptomatic cases, the period of contact is measured as 2 days before through the 14 days after the date on which the sample was taken which led to confirmation. | |||||
| Note: This may occur during 2 days before 14 days after symptom onset in a suspected/confirmed case | |||||
| Canada[ | Patient with laboratory-confirmed SARS-CoV-2 infection with the following:a. test performed at a community, hospital, or reference laboratory running a validated assay andb. consists of detection of at least one specific gene target by nucleic acid amplification test assay. | Symptoms that include ≥ 2 of the following:a. fever or signs of fever,b. cough (new or exacerbated chronic),c. sore throat,d. runny nose,e. headache, andf. meets exposure criteria org. had close contact with a probable case of COVID-19. | a. fever (≥ 38°C) and/or new onset/exacerbation of cough;b. meets COVID-19 exposure criteria; andc. laboratory test has been performed but is inconclusive; ora. fever (≥ 38°C) and/or new onset/exacerbation of cough; andb. close contact with a confirmed case of COVID-19; orc. lived in or worked in a closed facility known to be experiencing an outbreak, | Person who provided care for patient;had other similar close physical contact; orlived with or otherwise had close prolonged contact with probable or confirmed case while the case was ill. | Exposure:In 14 days before onset of illness, has the following:a. traveled to an affected area;b. had close contact with a person with acute respiratory illness who has been to an affected area within 14 days of their illness onset;c. had participated in a mass gathering identified as a source of exposure; ord. had laboratory exposure to biological materials containing SARS-CoV-2. |
| Australia[ | A person who has the following:a. tests positive to a validated specific SARS-CoV-2 nucleic acid test;b. virus isolated in cell culture, with PCR confirmation using validated method; orc. undergoes seroconversion to or has a significant rise in SARS-CoV-2 neutralizing or IgG antibody level (≥ 4-fold rise in titre). | a. Fever (≥ 37.5°C) or a history of fever (e.g., chills and night sweats) or acute respiratory infection (e.g., cough, shortness of breath, and sore throat) or loss of smell or taste and either of (b) or (c):b. In the 14 days before illness onset has ≥ 1 of the following:i. close contact with confirmed or probable case;ii. international or interstate travel;iii. passengers or crew who have traveled on a cruise ship;iv. healthcare, aged, or residential care workers and staff with direct patient contact; orv. people who have lived in or traveled through a geographically localized area with elevated risk of community transmission; or | a. detection of SARS-CoV-2 neutralizing or IgG antibody;b. has a compatible clinical illness; andc. meet one or more of the epidemiological criteria in (b) or (c) as per suspect case definition. | a. ≥ 15 minutes, cumulative within a week, face-to-face contact with a confirmed or probable case, up to 48 hours before symptom onset in that case orb. sharing of a closed space with a confirmed or probably case for ≥ 2 hours, up to 48 hours before the symptom onset in that case.The definition includes also direct contact of body fluids/laboratory specimens with inadequate PPE, being in the same hospital room during an aerosol-generating procedure without PPE, aircraft passengers within two rows, and crew members as appropriate.An extended definition of “casual contacts” is also available. | High-risk setting: any setting with evidence of a risk for rapid spread and ongoing chains of infection, such as places where people reside in groups or workplace settings where previous outbreaks have shown large-scale amplification. These include but are not limited to the following:a. aged/residential care facility,b. correctional facility,c. detention center, ord. aboriginal rural and remote communities.Within these settings, an outbreak is defined as a single confirmed case in a resident, staff member, or frequent attendee. |
| c. hospitalized patients where no other clinical focus of infection or alternate explanation of the illness is evident. | |||||
| European Centre for Disease Prevention and Control[ | Detection of SARS-CoV-2 nucleic acid in a clinical specimen. | No longer used as a term. Replaced with “possible case,” defined by any of cough, fever, shortness of breath, or sudden onset of anosmia, ageusia, or dysgeusia. | a. Radiological evidence showing lesions compatible with COVID-19 orb. ≥ 1 of: cough, fever, shortness of breath, or sudden onset of anosmia, ageusia, or dysgeusia. and one epidemiological criteria (as in the following text):Epidemiological criteria:i. close contact (high-risk contact, see contact definition) with a confirmed case in 14 days before symptom onset or | Contact with a COVID-19 case within 48 hours before symptom onset in that case to 14 days after. High-risk contact, used in the probable case definition, is defined as any of the following:a. having had face-to-face contact with a case, within 2 m for more than 15 minutes;b. having had physical contact with a case;c. having unprotected direct contact with infectious secretions of a case; | – |
| ii. having been a resident or staff member in a residential institution for vulnerable people where ongoing COVID-19 transmission has been confirmed, in the 14 days before symptom onset. | d. having been in a closed environment with a case for more than 15 minutes (e.g., a closed room);e. in an aircraft, sitting within two seats in any direction of a case, or being a crew member for that area of the craft; orf. a healthcare worker or other person providing care to a COVID-19 case, or laboratory workers handling specimens from a case, without recommended PPE. | ||||
| United Kingdom[ | – | – | – | – | Possible case: |
| a. requiring admission to hospital and evidence of pneumonia or ARDS or influenza-like illness or loss of or change in normal sense of taste or smell or | |||||
| b. well enough to remain in community with new continuous cough and/or high temperature and/or a loss of or change in normal sense of taste or smell. | |||||
| USA CDC[ | Detection of SARS-CoV-2 RNA in a clinical specimen using a molecular amplification test. | – | a. Meet clinical criteria and epidemiological evidence with no confirmed test; | Being within 6 ft of a case for at least 10–30 minutes, depending on the exposure; in healthcare settings, some exposures may need to be only for a few minutes | Clinical criteria: |
| b. meet presumptive laboratory evidence and either clinical criteria or epidemiological evidence; or | a. ≥ 2 of the following: fever, chills, rigors, myalgia, headache, sore throat, and new olfactory and taste disorder; | ||||
| c. meet vital records criteria with no confirmatory laboratory testing performed for COVID-19. | b. ≥ 1 of cough, shortness of breath, or difficulty breathing; or | ||||
| Epidemiological linkage: ≥ 1 of the following in the 14 days before onset of symptoms: | c. severe respiratory illness with either clinical/radiological evidence of pneumonia or ARDS; and | ||||
| a. close contact with a confirmed or probable case; | d. no alternative diagnosis more likely. | ||||
| b. close contact with a person with clinical compatible illness and linkage to a confirmed case; | Presumptive laboratory evidence: | ||||
| c. travel to or residence in an area with sustained, ongoing community transmission of SARS-CoV-2; or | a. detection of specific antigen in a clinical specimen or | ||||
| d. member of a risk cohort as defined by public health authorities during an outbreak. | b. detection of specific antibody in serum, plasma or whole blood indicative of a new or recent infection. | ||||
| Vital records criteria: | |||||
| a. a death certificate that lists COVID-19 disease or SARS-CoV-2 as a cause of death or a significant condition contributing to death. | |||||
| China NHC | Suspect cases with ≥ 1 of the following: | Considers the following: | – | – | – |
| a. RT fluorescent PCR positive for nCoV; | a. ≥ 1 of the following: | ||||
| b. viral gene sequence highly homologous for nCoV; or | i. history of or travel to Wuhan/surrounds or communities with cases within 14 days; | ||||
| c. virus-specific IgM and IgG detectable in serum, with IgG at least 4-fold increase during convalescence. | ii. in contact with nCoV-infected people within 14 days; | ||||
| iii. in contact with patients with fever/respiratory symptoms from regions with confirmed cases; and | |||||
| iv. clustered cases (≥ 2 with symptoms, e.g., in family, office, or school) and | |||||
| b. ≥ 2 of (≥ 3 if failing to meet (a) above) the following: | |||||
| i. fever and/or respiratory symptoms; | |||||
| ii. imaging characteristics; and | |||||
| iii. normal or decreased WCC, and normal or decreased lymphocytes in early stages. | |||||
| NICD, South Africa[ | Laboratory-confirmed infection with SARS-CoV-2. | Defined as PUI. | PUI for whom SARS-CoV-2 testing is inconclusive or | A person having the following: | – |
| a. Acute respiratory illness (≥ 1 of fever (or history of fever), cough, sore throat, and shortness of breath) and | tested positive in a pan-COVID-19 assay. | a. face-to-face contact (≤ 2 m) or being in a closed environment with a COVID-19 case; | |||
| b. close contact with a confirmed or probable case; | b. HCW/person providing care while not wearing recommended PPE; or | ||||
| c. history of travel to area with local transmission; | c. within two seats of COVID-19 patient on an aircraft, or crew members for that section. | ||||
| d. worked in or attended a healthcare facility where COVID-19 patients are being treated; or | |||||
| e. admitted with severe pneumonia of unknown aetiology. |
ARDS = acute respiratory distress syndrome; PPE = personal protective equipment; PUI = person under investigation; WCC = white cell count.
Risk factors for fatal disease
| HR | OR | |
|---|---|---|
| Patient comorbidities | ||
| Chronic cardiac disease | 1.16–1.76 | – |
| Chronic pulmonary disease | 1.17–2.94 | – |
| Chronic kidney disease | 1.28 | – |
| Obesity | 1.33 | – |
| Chronic neurological disorder | 1.17 | – |
| Dementia | 1.40 | – |
| Malignancy | 1.13–1.3 | – |
| Liver disease | 1.51 | – |
| Disease characteristics at presentation | ||
| Oxygen saturation < 88% | 2.0 | – |
| SOFA score | – | 5.65 |
| Biomarkers | ||
| Raised C-reactive protein | > 3.5 | – |
| Raised initial D-dimer | 1.02–2.2 | 18.42 |
| Elevated troponin | 2.1 | – |
| Neutrophilia | 1.08 | – |
| Elevated lactate dehydrogenase | 1.30 | – |
| Elevated interleukin 6 | 1.11 (per decile increase) | – |
HR = hazard ratio; OR = odds ratio.
Hazard ratio and OR were obtained from the reported data: patient comorbidities,[10,41,43,60,84,112] disease characteristics,[10,41,43,45,105] and biomarkers.[10,41,43,45,75,104,105,112]