| Literature DB >> 32596285 |
Jingwei Liu1,2,3, Hao Li1,2,3, Liping Sun1,2,3, Yuan Yuan1,2,3, Chengzhong Xing1,2,3.
Abstract
BACKGROUND: Although multiple types of cancers demonstrated favorable outcome after immunotherapy of PD-1/PD-L1 blockade, the specific regulatory mechanism of PD genes in gastric cancer (GC) remains largely unknown.Entities:
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Year: 2020 PMID: 32596285 PMCID: PMC7298268 DOI: 10.1155/2020/2496582
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1
Figure 2
Figure 3Association of mutations with PD-1, PD-L1, and PD-L2 expressions in gastric cancer.
| Gene | Mutation | PD-1 | PD-L1 | PD-L2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Mean | SD |
| Mean | SD |
| Mean | SD |
| ||
| ARID1A | No | 0.612 | 1.164 | 2.407 | 23.912 | 0.508 | 1.133 | |||
| ARID1A | Yes | 0.673 | 0.844 | 0.877 | 0.646 | 0.835 | 0.866 | 0.567 | 0.862 | 0.719 |
| CSMD1 | No | 0.597 | 1.176 | 1.032 | 5.874 | 0.458 | 0.987 | |||
| CSMD1 | Yes | 0.705 | 1.046 | 0.480 | 9.621 | 58.396 | 0.203 | 0.791 | 1.682 | 0.281 |
| CSMD3 | No | 0.582 | 1.101 | 2.848 | 27.095 | 0.494 | 0.971 | |||
| CSMD3 | Yes | 0.712 | 1.318 | 0.706 | 0.846 | 2.000 | 0.924 | 0.558 | 1.520 | 0.506 |
| DNAH5 | No | 0.626 | 1.221 | 2.652 | 25.535 | 0.506 | 1.164 | |||
| DNAH5 | Yes | 0.540 | 0.660 | 0.724 | 0.667 | 1.315 | 0.797 | 0.527 | 0.877 | 0.892 |
| FAT3 | No | 0.619 | 1.198 | 2.684 | 25.486 | 0.523 | 1.197 | |||
| FAT3 | Yes | 0.582 | 0.868 | 0.590 | 0.428 | 0.463 | 0.981 | 0.427 | 0.511 | 0.763 |
| FAT4 | No | 0.655 | 1.250 | 2.718 | 26.117 | 0.529 | 1.194 | |||
| FAT4 | Yes | 0.429 | 0.544 | 0.722 | 0.784 | 1.614 | 0.870 | 0.420 | 0.747 | 0.919 |
| FLG | No | 0.649 | 1.256 | 2.439 | 25.698 | 0.540 | 1.237 | |||
| FLG | Yes | 0.466 | 0.555 | 0.991 | 2.053 | 11.588 | 0.647 | 0.379 | 0.388 | 0.758 |
| HMCN1 | No | 0.614 | 1.168 | 2.648 | 25.234 | 0.498 | 0.926 | |||
| HMCN1 | Yes | 0.611 | 1.085 | 0.669 | 0.368 | 0.442 | 0.419 | 0.591 | 2.062 | 0.159 |
| LRP1B | No | 0.640 | 1.254 | 2.865 | 26.803 | 0.544 | 1.223 | |||
| LRP1B | Yes | 0.524 | 0.723 | 0.836 | 0.631 | 1.212 | 0.579 | 0.389 | 0.687 | 0.892 |
| MUC16 | No | 0.580 | 1.186 | 1.155 | 6.308 | 0.499 | 1.064 | |||
| MUC16 | Yes | 0.704 | 1.072 | 0.767 | 5.652 | 44.389 | 0.619 | 0.538 | 1.286 | 0.874 |
| OBSCN | No | 0.603 | 1.188 | 2.683 | 25.641 | 0.539 | 1.210 | |||
| OBSCN | Yes | 0.671 | 0.968 | 0.189 | 0.584 | 0.797 | 0.211 | 0.345 | 0.383 | 0.670 |
| PCDH15 | No | 0.645 | 1.233 | 2.386 | 25.271 | 0.543 | 1.213 | |||
| PCDH15 | Yes | 0.456 | 0.625 | 0.450 | 2.255 | 12.515 | 0.541 | 0.341 | 0.467 | 0.111 |
| PCLO | No | 0.636 | 1.222 | 2.299 | 24.906 | 0.535 | 1.197 | |||
| PCLO | Yes | 0.479 | 0.606 | 0.683 | 2.765 | 13.618 | 0.882 | 0.356 | 0.486 | 0.129 |
| PIK3CA | No | 0.520 | 0.925 | 0.946 | 5.834 | 0.425 | 0.936 | |||
| PIK3CA | Yes | 1.113 | 1.913 | <0.001 | 9.890 | 57.716 | <0.001 | 0.956 | 1.778 | <0.001 |
| RYR2 | No | 0.623 | 1.193 | 2.653 | 25.587 | 0.517 | 1.171 | |||
| RYR2 | Yes | 0.561 | 0.924 | 0.825 | 0.708 | 1.333 | 0.131 | 0.467 | 0.827 | 0.689 |
| SPTA1 | No | 0.643 | 1.230 | 2.724 | 25.691 | 0.543 | 1.211 | |||
| SPTA1 | Yes | 0.451 | 0.591 | 0.580 | 0.406 | 0.523 | 0.557 | 0.325 | 0.392 | 0.260 |
| SYNE1 | No | 0.654 | 1.190 | 2.925 | 26.804 | 0.564 | 1.257 | |||
| SYNE1 | Yes | 0.473 | 1.027 | 0.137 | 0.424 | 0.570 | 0.415 | 0.321 | 0.380 | 0.081 |
| TP53 | No | 0.680 | 1.295 | 3.179 | 27.936 | 0.601 | 1.307 | |||
| TP53 | Yes | 0.448 | 0.677 | 0.125 | 0.333 | 0.484 | 0.015 | 0.280 | 0.313 | 0.014 |
| TTN | No | 0.640 | 1.178 | 1.268 | 6.978 | 0.475 | 0.699 | |||
| TTN | Yes | 0.576 | 1.128 | 0.054 | 3.918 | 35.803 | 0.230 | 0.558 | 1.542 | 0.088 |
| ZFHX4 | No | 0.634 | 1.190 | 2.287 | 24.572 | 0.529 | 1.185 | |||
| ZFHX4 | Yes | 0.462 | 0.855 | 0.372 | 2.951 | 14.867 | 0.650 | 0.360 | 0.466 | 0.411 |
Figure 4GO and KEGG pathway enrichment analyses of PD-1, PD-L1, and PD-L2 coexpression genes in gastric cancer.
| ID | Description |
| Adj. | Count |
|---|---|---|---|---|
| hsa04658 | Th1 and Th2 cell differentiation | 2.23 | 9.82 | 11 |
| hsa04659 | Th17 cell differentiation | 1.28 | 2.82 | 11 |
| hsa04640 | Hematopoietic cell lineage | 1.36 | 1.99 | 10 |
| hsa05166 | Human T-cell leukemia virus 1 infection | 4.35 | 4.78 | 11 |
| hsa05169 | Epstein-Barr virus infection | 2.47 | 2.17 | 9 |
| hsa05310 | Asthma | 3.70 | 2.71 | 6 |
| hsa05140 | Leishmaniasis | 9.49 | 5.74 | 7 |
| hsa04612 | Antigen processing and presentation | 1.04 | 5.74 | 7 |
| hsa05330 | Allograft rejection | 1.38 | 6.74 | 6 |
| hsa05332 | Graft-versus-host disease | 2.24 | 9.86 | 6 |
| GO:0032943 | Mononuclear cell proliferation | 5.52 | 6.03 | 5 |
| GO:0032944 | Regulation of mononuclear cell proliferation | 1.98 | 2.53 | 5 |
| GO:0007159 | Leukocyte cell-cell adhesion | 1.01 | 2.13 | 7 |
| GO:0051251 | Positive regulation of lymphocyte activation | 1.89 | 5.32 | 7 |
| GO:1903039 | Positive regulation of leukocyte cell-cell adhesion | 5.08 | 1.65 | 7 |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen | 3.59 | 1.51 | 6 |
| GO:0050870 | Positive regulation of T cell activation | 2.94 | 1.38 | 7 |
| GO:0042110 | T cell activation | 2.09 | 1.47 | 9 |
| GO:0060333 | Interferon-gamma-mediated signaling pathway | 1.16 | 9.75 | 7 |
| GO:0050852 | T cell receptor signaling pathway | 9.42 | 3.98 | 12 |
Figure 5
Figure 6Association of PD-1, PD-L1, and PD-L2 with expression of key immune biomarkers.
| Gene | PD-1 | PD-L1 | PD-L2 | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
|
| Adj. |
|
| Adj. |
|
| Adj. | |
| CD28 | 0.718 | 1.30 | 3.25 | 0.587 | 3.89 | 7.79 | 0.801 | 5.70 | 1.90 |
| CD80 | 0.687 | 1.07 | 1.78 | 0.813 | 1.84 | 1.84 | 0.866 | 2.32 | 1.16 |
| CD86 | 0.691 | 1.84 | 3.67 | 0.754 | 3.30 | 1.65 | 0.922 | 4.06 | 4.06 |
| CTLA4 | 0.826 | 9.29 | 9.29 | 0.725 | 2.98 | 9.92 | 0.742 | 9.38 | 2.34 |
| RGMB | 0.290 | 1.09 | 1.21 | 0.307 | 1.28 | 1.28 | 0.451 | 3.77 | 4.18 |
| CD58 | 0.258 | 4.25 | 4.25 | 0.516 | 6.43 | 1.07 | 0.480 | 5.15 | 6.44 |
| CD27 | 0.798 | 6.40 | 3.20 | 0.509 | 3.87 | 5.53 | 0.685 | 2.53 | 4.21 |
| CD70 | 0.563 | 1.08 | 1.54 | 0.499 | 5.83 | 7.29 | 0.553 | 1.84 | 2.64 |
| HLA-A | 0.509 | 4.39 | 5.49 | 0.483 | 2.79 | 3.10 | 0.409 | 1.50 | 1.50 |
| CD74 | 0.735 | 7.96 | 2.65 | 0.617 | 9.63 | 2.41 | 0.691 | 1.53 | 3.05 |