Literature DB >> 32589032

Kinetics of Fast Tetramerization of the Huntingtin Exon 1 Protein Probed by Concentration-Dependent On-Resonance R Measurements.

Alberto Ceccon1, Vitali Tugarinov1, G Marius Clore1.   

Abstract

An approach for the quantitative description of the kinetics of very fast exchange processes (τex < 50-100 μs) associated with transient, reversible protein oligomerization, is presented. We show that on-resonance 15N-R1ρ measurements conducted as a function of protein concentration at several spin-lock radio frequency field strengths are indispensable for unambiguous determination of the rate constants for interconversion between monomeric and higher order oligomeric species. The approach is experimentally demonstrated on the study of fast, reversible tetramerization of the full-length Huntingtin exon 1 protein, httex1, responsible for Huntington's disease. Incorporation of concentration-dependent 15N-R2,eff data, obtained from on-resonance R1ρ measurements performed at three spin-lock field strengths, into analysis of the kinetic scheme describing reversible tetramerization of httex1 allowed us to uniquely determine the rate constants of interconversion between the various species. This approach serves as a valuable complement to the existing array of NMR techniques for studying early, transient oligomerization events in protein aggregation pathways.

Entities:  

Year:  2020        PMID: 32589032      PMCID: PMC7377354          DOI: 10.1021/acs.jpclett.0c01636

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  15 in total

Review 1.  Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules.

Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Reconstructing NMR spectra of "invisible" excited protein states using HSQC and HMQC experiments.

Authors:  Nikolai R Skrynnikov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-10-16       Impact factor: 15.419

Review 3.  Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy.

Authors:  Arthur G Palmer; Francesca Massi
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  Probing initial transient oligomerization events facilitating Huntingtin fibril nucleation at atomic resolution by relaxation-based NMR.

Authors:  Samuel A Kotler; Vitali Tugarinov; Thomas Schmidt; Alberto Ceccon; David S Libich; Rodolfo Ghirlando; Charles D Schwieters; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-11       Impact factor: 11.205

Review 5.  Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.

Authors:  Dmitry M Korzhnev; Lewis E Kay
Journal:  Acc Chem Res       Date:  2008-02-15       Impact factor: 22.384

Review 6.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

7.  Allosteric switch regulates protein-protein binding through collective motion.

Authors:  Colin A Smith; David Ban; Supriya Pratihar; Karin Giller; Maria Paulat; Stefan Becker; Christian Griesinger; Donghan Lee; Bert L de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-09       Impact factor: 11.205

8.  Self-assembly of polyglutamine-containing huntingtin fragments into amyloid-like fibrils: implications for Huntington's disease pathology.

Authors:  E Scherzinger; A Sittler; K Schweiger; V Heiser; R Lurz; R Hasenbank; G P Bates; H Lehrach; E E Wanker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

9.  General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains.

Authors:  Hans Koss; Mark Rance; Arthur G Palmer
Journal:  J Magn Reson       Date:  2016-10-27       Impact factor: 2.229

10.  Self-Assembly of Human Profilin-1 Detected by Carr-Purcell-Meiboom-Gill Nuclear Magnetic Resonance (CPMG NMR) Spectroscopy.

Authors:  Enrico Rennella; Ashok Sekhar; Lewis E Kay
Journal:  Biochemistry       Date:  2017-01-20       Impact factor: 3.162

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  5 in total

Review 1.  NMR methods for exploring 'dark' states in ligand binding and protein-protein interactions.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2021-11-02       Impact factor: 9.795

2.  Quantitative NMR analysis of the kinetics of prenucleation oligomerization and aggregation of pathogenic huntingtin exon-1 protein.

Authors:  Alberto Ceccon; Vitali Tugarinov; Francesco Torricella; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-12       Impact factor: 12.779

3.  NMR spectroscopy, excited states and relevance to problems in cell biology - transient pre-nucleation tetramerization of huntingtin and insights into Huntington's disease.

Authors:  G Marius Clore
Journal:  J Cell Sci       Date:  2022-06-15       Impact factor: 5.235

4.  Probing the Interaction of Huntingtin Exon-1 Polypeptides with the Chaperonin Nanomachine GroEL.

Authors:  Marielle A Wälti; Samuel A Kotler; G Marius Clore
Journal:  Chembiochem       Date:  2021-04-07       Impact factor: 3.461

5.  Quantitative Exchange NMR-Based Analysis of Huntingtin-SH3 Interactions Suggests an Allosteric Mechanism of Inhibition of Huntingtin Aggregation.

Authors:  Alberto Ceccon; Vitali Tugarinov; G Marius Clore
Journal:  J Am Chem Soc       Date:  2021-06-17       Impact factor: 15.419

  5 in total

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