Literature DB >> 12371879

Reconstructing NMR spectra of "invisible" excited protein states using HSQC and HMQC experiments.

Nikolai R Skrynnikov1, Frederick W Dahlquist, Lewis E Kay.   

Abstract

Carr-Purcell-Meiboom-Gill (CPMG) relaxation measurements employing trains of 180 degrees pulses with variable pulse spacing provide valuable information about systems undergoing millisecond-time-scale chemical exchange. Fits of the CPMG relaxation dispersion profiles yield rates of interconversion, relative populations, and absolute values of chemical shift differences between the exchanging states, |Deltaomega|. It is shown that the sign of Deltaomega that is lacking from CPMG dispersion experiments can be obtained from a comparison of chemical shifts in the indirect dimensions in either a pair of HSQC (heteronuclear single quantum coherence) spectra recorded at different magnetic fields or HSQC and HMQC (heteronuclear multiple quantum coherence) spectra obtained at a single field. The methodology is illustrated with an application to a cavity mutant of T4 lysozyme in which a leucine at position 99 has been replaced by an alanine, giving rise to exchange between ground state and excited state conformations with a rate on the order of 1450 s(-1) at 25 degrees C.

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Year:  2002        PMID: 12371879     DOI: 10.1021/ja0207089

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  83 in total

1.  Off-resonance R1rho relaxation outside of the fast exchange limit: an experimental study of a cavity mutant of T4 lysozyme.

Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

2.  High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins.

Authors:  John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

3.  Segmental motions, not a two-state concerted switch, underlie allostery in CheY.

Authors:  Leanna R McDonald; Joshua A Boyer; Andrew L Lee
Journal:  Structure       Date:  2012-06-21       Impact factor: 5.006

4.  Probing the mechanism of inhibition of amyloid-β(1-42)-induced neurotoxicity by the chaperonin GroEL.

Authors:  Marielle A Wälti; Joseph Steiner; Fanjie Meng; Hoi Sung Chung; John M Louis; Rodolfo Ghirlando; Vitali Tugarinov; Avindra Nath; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

5.  Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis.

Authors:  Dan McElheny; Jason R Schnell; Jonathan C Lansing; H Jane Dyson; Peter E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

6.  Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

Authors:  Christian Eichmüller; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2006-12-19       Impact factor: 2.835

7.  A methyl 1H double quantum CPMG experiment to study protein conformational exchange.

Authors:  Anusha B Gopalan; Tairan Yuwen; Lewis E Kay; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-10-01       Impact factor: 2.835

8.  Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange.

Authors:  Jameson R Bothe; Zachary W Stein; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2014-04-20       Impact factor: 2.229

9.  Conformational Dynamics and Allostery in E2:E3 Interactions Drive Ubiquitination: gp78 and Ube2g2.

Authors:  Kalyan S Chakrabarti; Jess Li; Ranabir Das; R Andrew Byrd
Journal:  Structure       Date:  2017-04-20       Impact factor: 5.006

Review 10.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

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