Literature DB >> 32587957

TADPOLE Challenge: Accurate Alzheimer's disease prediction through crowdsourced forecasting of future data.

Răzvan V Marinescu1,2, Neil P Oxtoby2, Alexandra L Young2, Esther E Bron3, Arthur W Toga4, Michael W Weiner5, Frederik Barkhof3,6, Nick C Fox7, Polina Golland1, Stefan Klein3, Daniel C Alexander2.   

Abstract

The Alzheimer's Disease Prediction Of Longitudinal Evolution (TADPOLE) Challenge compares the performance of algorithms at predicting the future evolution of individuals at risk of Alzheimer's disease. TADPOLE Challenge participants train their models and algorithms on historical data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) study. Participants are then required to make forecasts of three key outcomes for ADNI-3 rollover participants: clinical diagnosis, Alzheimer's Disease Assessment Scale Cognitive Subdomain (ADAS-Cog 13), and total volume of the ventricles - which are then compared with future measurements. Strong points of the challenge are that the test data did not exist at the time of forecasting (it was acquired afterwards), and that it focuses on the challenging problem of cohort selection for clinical trials by identifying fast progressors. The submission phase of TADPOLE was open until 15 November 2017; since then data has been acquired until April 2019 from 219 subjects with 223 clinical visits and 150 Magnetic Resonance Imaging (MRI) scans, which was used for the evaluation of the participants' predictions. Thirty-three teams participated with a total of 92 submissions. No single submission was best at predicting all three outcomes. For diagnosis prediction, the best forecast (team Frog), which was based on gradient boosting, obtained a multiclass area under the receiver-operating curve (MAUC) of 0.931, while for ventricle prediction the best forecast (team EMC1 ), which was based on disease progression modelling and spline regression, obtained mean absolute error of 0.41% of total intracranial volume (ICV). For ADAS-Cog 13, no forecast was considerably better than the benchmark mixed effects model (BenchmarkME ), provided to participants before the submission deadline. Further analysis can help understand which input features and algorithms are most suitable for Alzheimer's disease prediction and for aiding patient stratification in clinical trials. The submission system remains open via the website: https://tadpole.grand-challenge.org/.

Entities:  

Keywords:  Alzheimer’s Disease; Community Challenge; Future prediction

Year:  2019        PMID: 32587957      PMCID: PMC7315046          DOI: 10.1007/978-3-030-32281-6_1

Source DB:  PubMed          Journal:  Predict Intell Med


  13 in total

1.  Accuracy of the clinical diagnosis of Alzheimer disease at National Institute on Aging Alzheimer Disease Centers, 2005-2010.

Authors:  Thomas G Beach; Sarah E Monsell; Leslie E Phillips; Walter Kukull
Journal:  J Neuropathol Exp Neurol       Date:  2012-04       Impact factor: 3.685

2.  Editorial on special issue: Machine learning on MCI.

Authors:  Alessia Sarica; Antonio Cerasa; Aldo Quattrone; Vince Calhoun
Journal:  J Neurosci Methods       Date:  2018-03-23       Impact factor: 2.390

3.  Quantifying the pathophysiological timeline of Alzheimer's disease.

Authors:  Eric Yang; Michael Farnum; Victor Lobanov; Tim Schultz; Rudi Verbeeck; Nandini Raghavan; Mahesh N Samtani; Gerald Novak; Vaibhav Narayan; Allitia DiBernardo
Journal:  J Alzheimers Dis       Date:  2011       Impact factor: 4.472

4.  Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge.

Authors:  Esther E Bron; Marion Smits; Wiesje M van der Flier; Hugo Vrenken; Frederik Barkhof; Philip Scheltens; Janne M Papma; Rebecca M E Steketee; Carolina Méndez Orellana; Rozanna Meijboom; Madalena Pinto; Joana R Meireles; Carolina Garrett; António J Bastos-Leite; Ahmed Abdulkadir; Olaf Ronneberger; Nicola Amoroso; Roberto Bellotti; David Cárdenas-Peña; Andrés M Álvarez-Meza; Chester V Dolph; Khan M Iftekharuddin; Simon F Eskildsen; Pierrick Coupé; Vladimir S Fonov; Katja Franke; Christian Gaser; Christian Ledig; Ricardo Guerrero; Tong Tong; Katherine R Gray; Elaheh Moradi; Jussi Tohka; Alexandre Routier; Stanley Durrleman; Alessia Sarica; Giuseppe Di Fatta; Francesco Sensi; Andrea Chincarini; Garry M Smith; Zhivko V Stoyanov; Lauge Sørensen; Mads Nielsen; Sabina Tangaro; Paolo Inglese; Christian Wachinger; Martin Reuter; John C van Swieten; Wiro J Niessen; Stefan Klein
Journal:  Neuroimage       Date:  2015-01-31       Impact factor: 6.556

5.  Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.

Authors:  Genevera I Allen; Nicola Amoroso; Catalina Anghel; Venkat Balagurusamy; Christopher J Bare; Derek Beaton; Roberto Bellotti; David A Bennett; Kevin L Boehme; Paul C Boutros; Laura Caberlotto; Cristian Caloian; Frederick Campbell; Elias Chaibub Neto; Yu-Chuan Chang; Beibei Chen; Chien-Yu Chen; Ting-Ying Chien; Tim Clark; Sudeshna Das; Christos Davatzikos; Jieyao Deng; Donna Dillenberger; Richard J B Dobson; Qilin Dong; Jimit Doshi; Denise Duma; Rosangela Errico; Guray Erus; Evan Everett; David W Fardo; Stephen H Friend; Holger Fröhlich; Jessica Gan; Peter St George-Hyslop; Satrajit S Ghosh; Enrico Glaab; Robert C Green; Yuanfang Guan; Ming-Yi Hong; Chao Huang; Jinseub Hwang; Joseph Ibrahim; Paolo Inglese; Anandhi Iyappan; Qijia Jiang; Yuriko Katsumata; John S K Kauwe; Arno Klein; Dehan Kong; Roland Krause; Emilie Lalonde; Mario Lauria; Eunjee Lee; Xihui Lin; Zhandong Liu; Julie Livingstone; Benjamin A Logsdon; Simon Lovestone; Tsung-Wei Ma; Ashutosh Malhotra; Lara M Mangravite; Taylor J Maxwell; Emily Merrill; John Nagorski; Aishwarya Namasivayam; Manjari Narayan; Mufassra Naz; Stephen J Newhouse; Thea C Norman; Ramil N Nurtdinov; Yen-Jen Oyang; Yudi Pawitan; Shengwen Peng; Mette A Peters; Stephen R Piccolo; Paurush Praveen; Corrado Priami; Veronica Y Sabelnykova; Philipp Senger; Xia Shen; Andrew Simmons; Aristeidis Sotiras; Gustavo Stolovitzky; Sabina Tangaro; Andrea Tateo; Yi-An Tung; Nicholas J Tustison; Erdem Varol; George Vradenburg; Michael W Weiner; Guanghua Xiao; Lei Xie; Yang Xie; Jia Xu; Hojin Yang; Xiaowei Zhan; Yunyun Zhou; Fan Zhu; Hongtu Zhu; Shanfeng Zhu
Journal:  Alzheimers Dement       Date:  2016-04-11       Impact factor: 21.566

6.  Instantiated mixed effects modeling of Alzheimer's disease markers.

Authors:  R Guerrero; A Schmidt-Richberg; C Ledig; T Tong; R Wolz; D Rueckert
Journal:  Neuroimage       Date:  2016-07-02       Impact factor: 6.556

7.  Mapping the evolution of regional atrophy in Alzheimer's disease: unbiased analysis of fluid-registered serial MRI.

Authors:  Rachael I Scahill; Jonathan M Schott; John M Stevens; Martin N Rossor; Nick C Fox
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

8.  Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment.

Authors:  Jonathan Young; Marc Modat; Manuel J Cardoso; Alex Mendelson; Dave Cash; Sebastien Ourselin
Journal:  Neuroimage Clin       Date:  2013-05-19       Impact factor: 4.881

9.  Automatic classification of MR scans in Alzheimer's disease.

Authors:  Stefan Klöppel; Cynthia M Stonnington; Carlton Chu; Bogdan Draganski; Rachael I Scahill; Jonathan D Rohrer; Nick C Fox; Clifford R Jack; John Ashburner; Richard S J Frackowiak
Journal:  Brain       Date:  2008-01-17       Impact factor: 13.501

10.  A data-driven model of biomarker changes in sporadic Alzheimer's disease.

Authors:  Alexandra L Young; Neil P Oxtoby; Pankaj Daga; David M Cash; Nick C Fox; Sebastien Ourselin; Jonathan M Schott; Daniel C Alexander
Journal:  Brain       Date:  2014-07-09       Impact factor: 13.501

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  5 in total

1.  Robust parametric modeling of Alzheimer's disease progression.

Authors:  Mostafa Mehdipour Ghazi; Mads Nielsen; Akshay Pai; Marc Modat; M Jorge Cardoso; Sébastien Ourselin; Lauge Sørensen
Journal:  Neuroimage       Date:  2020-10-16       Impact factor: 7.400

2.  DeepAtrophy: Teaching a neural network to detect progressive changes in longitudinal MRI of the hippocampal region in Alzheimer's disease.

Authors:  Mengjin Dong; Long Xie; Sandhitsu R Das; Jiancong Wang; Laura E M Wisse; Robin deFlores; David A Wolk; Paul A Yushkevich
Journal:  Neuroimage       Date:  2021-08-24       Impact factor: 6.556

3.  Degenerative adversarial neuroimage nets for brain scan simulations: Application in ageing and dementia.

Authors:  Daniele Ravi; Stefano B Blumberg; Silvia Ingala; Frederik Barkhof; Daniel C Alexander; Neil P Oxtoby
Journal:  Med Image Anal       Date:  2021-10-14       Impact factor: 8.545

4.  Diagnostic Performance of Generative Adversarial Network-Based Deep Learning Methods for Alzheimer's Disease: A Systematic Review and Meta-Analysis.

Authors:  Changxing Qu; Yinxi Zou; Yingqiao Ma; Qin Chen; Jiawei Luo; Huiyong Fan; Zhiyun Jia; Qiyong Gong; Taolin Chen
Journal:  Front Aging Neurosci       Date:  2022-04-21       Impact factor: 5.750

5.  VEGF-A-related genetic variants protect against Alzheimer's disease.

Authors:  Alexandros M Petrelis; Maria G Stathopoulou; Maria Kafyra; Helena Murray; Christine Masson; John Lamont; Peter Fitzgerald; George Dedoussis; Frances T Yen; Sophie Visvikis-Siest
Journal:  Aging (Albany NY)       Date:  2022-03-28       Impact factor: 5.682

  5 in total

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