Literature DB >> 27079753

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.

Genevera I Allen1, Nicola Amoroso2, Catalina Anghel3, Venkat Balagurusamy4, Christopher J Bare5, Derek Beaton6, Roberto Bellotti2, David A Bennett7, Kevin L Boehme8, Paul C Boutros9, Laura Caberlotto10, Cristian Caloian3, Frederick Campbell1, Elias Chaibub Neto5, Yu-Chuan Chang11, Beibei Chen12, Chien-Yu Chen13, Ting-Ying Chien14, Tim Clark15, Sudeshna Das15, Christos Davatzikos16, Jieyao Deng17, Donna Dillenberger4, Richard J B Dobson18, Qilin Dong17, Jimit Doshi16, Denise Duma19, Rosangela Errico20, Guray Erus16, Evan Everett1, David W Fardo21, Stephen H Friend5, Holger Fröhlich22, Jessica Gan1, Peter St George-Hyslop23, Satrajit S Ghosh24, Enrico Glaab25, Robert C Green26, Yuanfang Guan27, Ming-Yi Hong13, Chao Huang28, Jinseub Hwang29, Joseph Ibrahim28, Paolo Inglese30, Anandhi Iyappan31, Qijia Jiang1, Yuriko Katsumata32, John S K Kauwe33, Arno Klein34, Dehan Kong28, Roland Krause25, Emilie Lalonde3, Mario Lauria10, Eunjee Lee28, Xihui Lin3, Zhandong Liu1, Julie Livingstone3, Benjamin A Logsdon5, Simon Lovestone35, Tsung-Wei Ma12, Ashutosh Malhotra31, Lara M Mangravite36, Taylor J Maxwell37, Emily Merrill38, John Nagorski1, Aishwarya Namasivayam25, Manjari Narayan1, Mufassra Naz31, Stephen J Newhouse39, Thea C Norman5, Ramil N Nurtdinov40, Yen-Jen Oyang11, Yudi Pawitan41, Shengwen Peng17, Mette A Peters42, Stephen R Piccolo8, Paurush Praveen43, Corrado Priami10, Veronica Y Sabelnykova3, Philipp Senger44, Xia Shen45, Andrew Simmons46, Aristeidis Sotiras16, Gustavo Stolovitzky47, Sabina Tangaro48, Andrea Tateo49, Yi-An Tung50, Nicholas J Tustison51, Erdem Varol16, George Vradenburg52, Michael W Weiner53, Guanghua Xiao12, Lei Xie54, Yang Xie12, Jia Xu12, Hojin Yang28, Xiaowei Zhan12, Yunyun Zhou12, Fan Zhu55, Hongtu Zhu28, Shanfeng Zhu56.   

Abstract

Identifying accurate biomarkers of cognitive decline is essential for advancing early diagnosis and prevention therapies in Alzheimer's disease. The Alzheimer's disease DREAM Challenge was designed as a computational crowdsourced project to benchmark the current state-of-the-art in predicting cognitive outcomes in Alzheimer's disease based on high dimensional, publicly available genetic and structural imaging data. This meta-analysis failed to identify a meaningful predictor developed from either data modality, suggesting that alternate approaches should be considered for prediction of cognitive performance.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Azheimer's disease; Big data; Bioinformatics; Biomarkers; Cognitive decline; Crowdsource; Genetics; Imaging

Mesh:

Substances:

Year:  2016        PMID: 27079753      PMCID: PMC5474755          DOI: 10.1016/j.jalz.2016.02.006

Source DB:  PubMed          Journal:  Alzheimers Dement        ISSN: 1552-5260            Impact factor:   21.566


  33 in total

1.  A mutation in APP protects against Alzheimer's disease and age-related cognitive decline.

Authors:  Thorlakur Jonsson; Jasvinder K Atwal; Stacy Steinberg; Jon Snaedal; Palmi V Jonsson; Sigurbjorn Bjornsson; Hreinn Stefansson; Patrick Sulem; Daniel Gudbjartsson; Janice Maloney; Kwame Hoyte; Amy Gustafson; Yichin Liu; Yanmei Lu; Tushar Bhangale; Robert R Graham; Johanna Huttenlocher; Gyda Bjornsdottir; Ole A Andreassen; Erik G Jönsson; Aarno Palotie; Timothy W Behrens; Olafur T Magnusson; Augustine Kong; Unnur Thorsteinsdottir; Ryan J Watts; Kari Stefansson
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

2.  Mediterranean diet, Alzheimer disease, and vascular mediation.

Authors:  Nikolaos Scarmeas; Yaakov Stern; Richard Mayeux; Jose A Luchsinger
Journal:  Arch Neurol       Date:  2006-10-09

3.  Late-life engagement in social and leisure activities is associated with a decreased risk of dementia: a longitudinal study from the Kungsholmen project.

Authors:  Hui-Xin Wang; Anita Karp; Bengt Winblad; Laura Fratiglioni
Journal:  Am J Epidemiol       Date:  2002-06-15       Impact factor: 4.897

4.  Variant of TREM2 associated with the risk of Alzheimer's disease.

Authors:  Thorlakur Jonsson; Hreinn Stefansson; Stacy Steinberg; Ingileif Jonsdottir; Palmi V Jonsson; Jon Snaedal; Sigurbjorn Bjornsson; Johanna Huttenlocher; Allan I Levey; James J Lah; Dan Rujescu; Harald Hampel; Ina Giegling; Ole A Andreassen; Knut Engedal; Ingun Ulstein; Srdjan Djurovic; Carla Ibrahim-Verbaas; Albert Hofman; M Arfan Ikram; Cornelia M van Duijn; Unnur Thorsteinsdottir; Augustine Kong; Kari Stefansson
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

5.  Transition from cognitively impaired not demented to Alzheimer's disease: an analysis of changes in functional abilities in a dementia clinic cohort.

Authors:  Ging-Yuek R Hsiung; Sina Alipour; Claudia Jacova; Jacob Grand; Serge Gauthier; Sandra E Black; Rémi W Bouchard; Andrew Kertesz; Inge Loy-English; David B Hogan; Kenneth Rockwood; Howard H Feldman
Journal:  Dement Geriatr Cogn Disord       Date:  2008-04-16       Impact factor: 2.959

6.  Longitudinal progression of Alzheimer's-like patterns of atrophy in normal older adults: the SPARE-AD index.

Authors:  Christos Davatzikos; Feng Xu; Yang An; Yong Fan; Susan M Resnick
Journal:  Brain       Date:  2009-05-04       Impact factor: 13.501

7.  Risk factors for Alzheimer's disease: a prospective analysis from the Canadian Study of Health and Aging.

Authors:  Joan Lindsay; Danielle Laurin; René Verreault; Réjean Hébert; Barbara Helliwell; Gerry B Hill; Ian McDowell
Journal:  Am J Epidemiol       Date:  2002-09-01       Impact factor: 4.897

8.  MMSE items predict cognitive decline in persons with genetic risk for Alzheimer's disease.

Authors:  Linda M Ercoli; Prabha Siddarth; Jennifer J Dunkin; Jennifer Bramen; Gary W Small
Journal:  J Geriatr Psychiatry Neurol       Date:  2003-06       Impact factor: 2.680

9.  Calibrating longitudinal cognition in Alzheimer's disease across diverse test batteries and datasets.

Authors:  Alden L Gross; Richard Sherva; Shubhabrata Mukherjee; Stephen Newhouse; John S K Kauwe; Leanne M Munsie; Leo B Waterston; David A Bennett; Richard N Jones; Robert C Green; Paul K Crane
Journal:  Neuroepidemiology       Date:  2014-11-13       Impact factor: 3.282

10.  TREM2 variants in Alzheimer's disease.

Authors:  Rita Guerreiro; Aleksandra Wojtas; Jose Bras; Minerva Carrasquillo; Ekaterina Rogaeva; Elisa Majounie; Carlos Cruchaga; Celeste Sassi; John S K Kauwe; Steven Younkin; Lilinaz Hazrati; John Collinge; Jennifer Pocock; Tammaryn Lashley; Julie Williams; Jean-Charles Lambert; Philippe Amouyel; Alison Goate; Rosa Rademakers; Kevin Morgan; John Powell; Peter St George-Hyslop; Andrew Singleton; John Hardy
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

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  23 in total

1.  CSF protein changes associated with hippocampal sclerosis risk gene variants highlight impact of GRN/PGRN.

Authors:  David W Fardo; Yuriko Katsumata; John S K Kauwe; Yuetiva Deming; Oscar Harari; Carlos Cruchaga; Peter T Nelson
Journal:  Exp Gerontol       Date:  2017-02-09       Impact factor: 4.032

Review 2.  Crowdsourcing biomedical research: leveraging communities as innovation engines.

Authors:  Julio Saez-Rodriguez; James C Costello; Stephen H Friend; Michael R Kellen; Lara Mangravite; Pablo Meyer; Thea Norman; Gustavo Stolovitzky
Journal:  Nat Rev Genet       Date:  2016-07-15       Impact factor: 53.242

Review 3.  A review on neuroimaging-based classification studies and associated feature extraction methods for Alzheimer's disease and its prodromal stages.

Authors:  Saima Rathore; Mohamad Habes; Muhammad Aksam Iftikhar; Amanda Shacklett; Christos Davatzikos
Journal:  Neuroimage       Date:  2017-04-13       Impact factor: 6.556

4.  Mindboggling morphometry of human brains.

Authors:  Arno Klein; Satrajit S Ghosh; Forrest S Bao; Joachim Giard; Yrjö Häme; Eliezer Stavsky; Noah Lee; Brian Rossa; Martin Reuter; Elias Chaibub Neto; Anisha Keshavan
Journal:  PLoS Comput Biol       Date:  2017-02-23       Impact factor: 4.475

5.  Virtual Connectomic Datasets in Alzheimer's Disease and Aging Using Whole-Brain Network Dynamics Modelling.

Authors:  Lucas Arbabyazd; Kelly Shen; Zheng Wang; Martin Hofmann-Apitius; Petra Ritter; Anthony R McIntosh; Demian Battaglia; Viktor Jirsa
Journal:  eNeuro       Date:  2021-07-06

6.  Longitudinal clinical score prediction in Alzheimer's disease with soft-split sparse regression based random forest.

Authors:  Lei Huang; Yan Jin; Yaozong Gao; Kim-Han Thung; Dinggang Shen
Journal:  Neurobiol Aging       Date:  2016-07-15       Impact factor: 4.673

7.  TADPOLE Challenge: Accurate Alzheimer's disease prediction through crowdsourced forecasting of future data.

Authors:  Răzvan V Marinescu; Neil P Oxtoby; Alexandra L Young; Esther E Bron; Arthur W Toga; Michael W Weiner; Frederik Barkhof; Nick C Fox; Polina Golland; Stefan Klein; Daniel C Alexander
Journal:  Predict Intell Med       Date:  2019-10-10

8.  COMPASS: A computational model to predict changes in MMSE scores 24-months after initial assessment of Alzheimer's disease.

Authors:  Fan Zhu; Bharat Panwar; Hiroko H Dodge; Hongdong Li; Benjamin M Hampstead; Roger L Albin; Henry L Paulson; Yuanfang Guan
Journal:  Sci Rep       Date:  2016-10-05       Impact factor: 4.379

9.  Alzheimer's disease diagnosis based on the Hippocampal Unified Multi-Atlas Network (HUMAN) algorithm.

Authors:  Nicola Amoroso; Marianna La Rocca; Roberto Bellotti; Annarita Fanizzi; Alfonso Monaco; Sabina Tangaro
Journal:  Biomed Eng Online       Date:  2018-01-22       Impact factor: 2.819

Review 10.  A Blood Test for Alzheimer's Disease: Progress, Challenges, and Recommendations.

Authors:  Steven J Kiddle; Nicola Voyle; Richard J B Dobson
Journal:  J Alzheimers Dis       Date:  2018       Impact factor: 4.472

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