Literature DB >> 31877425

Modular Analysis and Design of Biological Circuits.

Theodore W Grunberg1, Domitilla Del Vecchio2.   

Abstract

Modularity has been the subject of intense investigation in systems biology for more than two decades. Whether modularity holds in biological networks is a question that has attracted renewed attention in recent years with the advent of synthetic biology, mostly as a convenient property to perform bottom-up design of complex systems. A number of studies have appeared, which fundamentally challenge modularity as a property of engineered biological circuits. Here, we summarize some of these studies and potential engineering solutions that have been proposed to enable modular composition of biological circuits.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2019        PMID: 31877425     DOI: 10.1016/j.copbio.2019.11.015

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  9 in total

Review 1.  Synthetic Biological Circuits within an Orthogonal Central Dogma.

Authors:  Alan Costello; Ahmed H Badran
Journal:  Trends Biotechnol       Date:  2020-06-22       Impact factor: 19.536

2.  Double-edged role of resource competition in gene expression noise and control.

Authors:  Hanah Goetz; Austin Stone; Rong Zhang; Ying-Cheng Lai; Xiao-Jun Tian
Journal:  Adv Genet (Hoboken)       Date:  2022-02-08

3.  What Is the Trait d'Union between Retroactivity and Molecular Communication Performance Limits?

Authors:  Francesca Ratti; Maurizio Magarini; Domitilla Del Vecchio
Journal:  Molecules       Date:  2022-05-13       Impact factor: 4.927

Review 4.  A synthetic synthesis to explore animal evolution and development.

Authors:  Mindy Liu Perkins; Lautaro Gandara; Justin Crocker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-05-30       Impact factor: 6.671

Review 5.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

6.  Robust and tunable signal processing in mammalian cells via engineered covalent modification cycles.

Authors:  Ross D Jones; Yili Qian; Katherine Ilia; Benjamin Wang; Michael T Laub; Domitilla Del Vecchio; Ron Weiss
Journal:  Nat Commun       Date:  2022-03-31       Impact factor: 17.694

7.  Engineering eukaryote-like regulatory circuits to expand artificial control mechanisms for metabolic engineering in Saccharomyces cerevisiae.

Authors:  Bingyin Peng; Naga Chandra Bandari; Zeyu Lu; Christopher B Howard; Colin Scott; Matt Trau; Geoff Dumsday; Claudia E Vickers
Journal:  Commun Biol       Date:  2022-02-16

8.  Automated model-predictive design of synthetic promoters to control transcriptional profiles in bacteria.

Authors:  Travis L LaFleur; Ayaan Hossain; Howard M Salis
Journal:  Nat Commun       Date:  2022-09-02       Impact factor: 17.694

9.  An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells.

Authors:  Ross D Jones; Yili Qian; Velia Siciliano; Breanna DiAndreth; Jin Huh; Ron Weiss; Domitilla Del Vecchio
Journal:  Nat Commun       Date:  2020-11-10       Impact factor: 14.919

  9 in total

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