Literature DB >> 27494248

Overloaded and stressed: whole-cell considerations for bacterial synthetic biology.

Olivier Borkowski1, Francesca Ceroni1, Guy-Bart Stan2, Tom Ellis3.   

Abstract

The predictability and robustness of engineered bacteria depend on the many interactions between synthetic constructs and their host cells. Expression from synthetic constructs is an unnatural load for the host that typically reduces growth, triggers stresses and leads to decrease in performance or failure of engineered cells. Work in systems and synthetic biology has now begun to address this through new tools, methods and strategies that characterise and exploit host-construct interactions in bacteria. Focusing on work in E. coli, we review here a selection of the recent developments in this area, highlighting the emerging issues and describing the new solutions that are now making the synthetic biology community consider the cell just as much as they consider the construct.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27494248     DOI: 10.1016/j.mib.2016.07.009

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  57 in total

1.  Synthetic negative feedback circuits using engineered small RNAs.

Authors:  Ciarán L Kelly; Andreas W K Harris; Harrison Steel; Edward J Hancock; John T Heap; Antonis Papachristodoulou
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

2.  A Practical Step-by-Step Guide for Quantifying Retroactivity in Gene Networks.

Authors:  Andras Gyorgy
Journal:  Methods Mol Biol       Date:  2021

3.  Engineering Sensors for Gene Expression Burden.

Authors:  Alice Boo; Francesca Ceroni
Journal:  Methods Mol Biol       Date:  2021

4.  Dynamic metabolic control: towards precision engineering of metabolism.

Authors:  Di Liu; Ahmad A Mannan; Yichao Han; Diego A Oyarzún; Fuzhong Zhang
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-29       Impact factor: 3.346

5.  Burden-driven feedback control of gene expression.

Authors:  Francesca Ceroni; Alice Boo; Simone Furini; Thomas E Gorochowski; Olivier Borkowski; Yaseen N Ladak; Ali R Awan; Charlie Gilbert; Guy-Bart Stan; Tom Ellis
Journal:  Nat Methods       Date:  2018-03-26       Impact factor: 28.547

6.  A Modelling Framework Linking Resource-Based Stochastic Translation to the Optimal Design of Synthetic Constructs.

Authors:  Peter Sarvari; Duncan Ingram; Guy-Bart Stan
Journal:  Biology (Basel)       Date:  2021-01-07

Review 7.  Synthetic Biological Circuits within an Orthogonal Central Dogma.

Authors:  Alan Costello; Ahmed H Badran
Journal:  Trends Biotechnol       Date:  2020-06-22       Impact factor: 19.536

8.  In silico design of context-responsive mammalian promoters with user-defined functionality.

Authors:  Adam J Brown; Suzanne J Gibson; Diane Hatton; David C James
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

9.  Picking the right metaphors for addressing microbial systems: economic theory helps understanding biological complexity.

Authors:  Juhyun Kim; Rafael Silva-Rocha; Víctor de Lorenzo
Journal:  Int Microbiol       Date:  2021-07-16       Impact factor: 2.479

10.  Scalable recombinase-based gene expression cascades.

Authors:  Tackhoon Kim; Benjamin Weinberg; Wilson Wong; Timothy K Lu
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.