Literature DB >> 325518

The iminoproton NMR spectrum of yeast tRNA-Phe predicted from crystal coordinates.

H A Geerdes, C W Hilbers.   

Abstract

The ring current effects on the base paired iminoprotons in yeast tRNA-Phe have been calculated from crystal coordinates. The results in conjunction with independently determined intrinsic positions of the iminoprotons in various base pairs enable us to predict the low field NMR spectrum of yeast tRNA-Phe. It turns out that the calculated NMR spectra are very sensitive to slight changes in structure. Moreover the crystal and solution structure are identical as far as the present methods go.

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Year:  1977        PMID： 325518      PMCID： PMC342420          DOI： 10.1093/nar/4.1.207

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  21 in total

1.  Ring-current shifts in the 300 MHz nuclear magnetic resonance spectra of six purified transfer RNA molecules.

Authors:  R G Shulman; C W Hilbers
Journal:  J Mol Biol       Date:  1973-06-25       Impact factor: 5.469

2.  High resolution NMR study of the melting of yeast tRNA Phe.

Authors:  C W Hilbers; R G Shulman; S H Kim
Journal:  Biochem Biophys Res Commun       Date:  1973-12-10       Impact factor: 3.575

3.  Assignment of the low field proton nuclear magnetic resonance spectrum of yeast phenylalanine transfer RNA to specific base pairs.

Authors:  D R Lightfoot; K L Wong; D R Kearns; B R Reid; R G Shulman
Journal:  J Mol Biol       Date:  1973-06-25       Impact factor: 5.469

4.  Structures for Poly(U)-poly(A)-poly(U)triple stranded polynucleotides.

Authors:  S Arnott; P J Bond
Journal:  Nat New Biol       Date:  1973-07-25

5.  [On pi currents in purine and pyrimidine bases of biochemical interest].

Authors:  C Giessner-Prettre; B Pullman
Journal:  C R Acad Hebd Seances Acad Sci D       Date:  1965-09-27

6.  Intermolecular nuclear shielding values for protons of purines and flavins.

Authors:  C Giessner-Prettre; B Pullman
Journal:  J Theor Biol       Date:  1970-04       Impact factor: 2.691

7.  Tertiary hydrogen bonds in the solution structure of transfer RNA.

Authors:  B R Reid; N S Ribeiro; G Gould; G Robillard; C W Hilbers; R G Shulman
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

8.  Proton nuclear magnetic resonance investigations of fraying in double-stranded d-ApTpGpCpApT in H2O solution.

Authors:  D J Patel; C W Hilbers
Journal:  Biochemistry       Date:  1975-06-17       Impact factor: 3.162

9.  NMR evidence of specific base-pairing between purines and pyrimidines.

Authors:  R R Shoup; H T Miles; E D Becker
Journal:  Biochem Biophys Res Commun       Date:  1966-04-19       Impact factor: 3.575

10.  Yeast phenylalanine transfer RNA: atomic coordinates and torsion angles.

Authors:  G J Quigley; N C Seeman; A H Wang; F L Suddath; A Rich
Journal:  Nucleic Acids Res       Date:  1975-12       Impact factor: 16.971
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  6 in total

1.  Demonstration of a tertiary interaction in solution between the extra arm and the D-stem in two different transfer RNA's by NMR.

Authors:  P J Salemink; T Yamane; C W Hilbers
Journal:  Nucleic Acids Res       Date:  1977-11       Impact factor: 16.971

2.  An NMR study of the exchange rates for protons involved in the secondary and tertiary structure of yeast tRNA Phe.

Authors:  P D Johnston; A G Redfield
Journal:  Nucleic Acids Res       Date:  1977-10       Impact factor: 16.971

3.  Nuclear magnetic resonance studies on yeast tRNAPhe I. Assignment of the iminoproton resonances of the acceptor and D stem by means of Nuclear Overhauser Effect experiments at 500 MHz.

Authors:  A Heerschap; C A Haasnoot; C W Hilbers
Journal:  Nucleic Acids Res       Date:  1982-11-11       Impact factor: 16.971

4.  Nuclear Overhauser effect in specifically deuterated macromolecules: NMR assay for unusual base pairing in transfer RNA.

Authors:  V Sánchez; A G Redfield; P D Johnston; J Tropp
Journal:  Proc Natl Acad Sci U S A       Date:  1980-10       Impact factor: 11.205

5.  Nonintercalative binding of ethidium bromide to nucleic acids: crystal structure of an ethidium--tRNA molecular complex.

Authors:  M Liebman; J Rubin; M Sundaralingam
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

6.  Nuclear magnetic resonance studies on yeast tRNAPhe. III. Assignments of the iminoproton resonances of the tertiary structure by means of nuclear Overhauser effect experiments at 500 MHz.

Authors:  A Heerschap; C A Haasnoot; C W Hilbers
Journal:  Nucleic Acids Res       Date:  1983-07-11       Impact factor: 16.971
  6 in total

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