Literature DB >> 802512

Yeast phenylalanine transfer RNA: atomic coordinates and torsion angles.

G J Quigley, N C Seeman, A H Wang, F L Suddath, A Rich.   

Abstract

The atomic coordinates of yeast phenylalanine transfer RNA (tRNA) as well as the torsion angles of the polynucleotide chain are presented as derived from an x-ray diffraction analysis of orthorhombic crystals. A comparison is made between the coordinates obtained from analysis of monoclinic crystals of the same material. It is concluded that the molecule has substantially the same form in the orthorhombic and the monoclinic lattices, except for differences found between residues at the 3' end of the polynucleotides chain. A number of observations are made concerning hydrogen bonding interactions which may account for many of the residues conserved in all tRNA sequences.

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Year:  1975        PMID: 802512      PMCID: PMC343600          DOI: 10.1093/nar/2.12.2329

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Structure of yeast phenylalanine tRNA at 3 A resolution.

Authors:  J D Robertus; J E Ladner; J T Finch; D Rhodes; R S Brown; B F Clark; A Klug
Journal:  Nature       Date:  1974-08-16       Impact factor: 49.962

2.  Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.

Authors:  S H Kim; F L Suddath; G J Quigley; A McPherson; J L Sussman; A H Wang; N C Seeman; A Rich
Journal:  Science       Date:  1974-08-02       Impact factor: 47.728

3.  The general structure of transfer RNA molecules.

Authors:  S H Kim; J L Sussman; F L Suddath; G J Quigley; A McPherson; A H Wang; N C Seeman; A RICH
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

4.  Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II. Crystallographic refinement at 1.9 A resolution.

Authors:  R Huber; D Kukla; W Bode; P Schwager; K Bartels; J Deisenhofer; W Steigemann
Journal:  J Mol Biol       Date:  1974-10-15       Impact factor: 5.469

5.  Nucleic acid conformation: crystal structure of a naturally occurring dinucleoside phosphate (UpA).

Authors:  N C Seeman; J L Sussman; H N Berman; S H Kim
Journal:  Nat New Biol       Date:  1971-09-15

6.  Atomic co-ordinates for yeast phenylalanine tRNA.

Authors:  J E Ladner; A Jack; J D Robertus; R S Brown; D Rhodes; B F Clark; A Klug
Journal:  Nucleic Acids Res       Date:  1975-09       Impact factor: 16.971

7.  Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain.

Authors:  S H Kim; G J Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  Science       Date:  1973-01-19       Impact factor: 47.728

  7 in total
  35 in total

1.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

2.  1H NMR studies of transfer RNA III: the observed and the computed spectra of the hydrogen-bonded NH resonances of baker's yeast transfer-RNA Phe.

Authors:  L S Kan; P O Ts'o
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

3.  Mosaic tile model for tRNA-enzyme recognition.

Authors:  S V Steinberg; L L Kisselev
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

4.  Effect of a mutation in the anticodon of human mitochondrial tRNAPro on its post-transcriptional modification pattern.

Authors:  H Brulé; W M Holmes; G Keith; R Giegé; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

5.  Atomic coordinates and molecular conformation of yeast phenylalanyl tRNA. An independent investigation.

Authors:  C D Stout; H Mizuno; J Rubin; T Brennan; S T Rao; M Sundaralingam
Journal:  Nucleic Acids Res       Date:  1976-04       Impact factor: 16.971

6.  Theoretical study on the proton chemical shifts of hydrogen bonded nucleic acid bases.

Authors:  C Giessner-Prettre; B Pullman; J Caillet
Journal:  Nucleic Acids Res       Date:  1977-01       Impact factor: 16.971

7.  Effect of aminoacylation on tRNA conformation.

Authors:  J Antosiewicz; D Porschke
Journal:  Eur Biophys J       Date:  1989       Impact factor: 1.733

8.  A 1:2 crystalline complex of ApA:proflavine: a model for binding to single-stranded regions in RNA.

Authors:  S Neidle; G Taylor; M Sanderson
Journal:  Nucleic Acids Res       Date:  1978-11       Impact factor: 16.971

9.  The kinetics of binding of U-U-C-A to a dodecanucleotide anticodon fragment from yeast tRNA-Phe.

Authors:  K Yoon; D H Turner; I Tinoco; F Haar; F Cramer
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

10.  Conformational analysis of m4(2)C-m4(2)C-m6(2)A: a chemically modified 3'-acceptor end of tRNA, studied by NMR and CD methods.

Authors:  J Doornbos; H P de Leeuw; C S Olsthoorn; G Wille-Hazeleger; H P Westerink; J H van Boom; C Altona
Journal:  Nucleic Acids Res       Date:  1983-11-11       Impact factor: 16.971

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