Literature DB >> 32550998

Characterization of Specific N-α-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library.

Pei-Pei Kung1, Patrick Bingham1, Benjamin J Burke1, Qiuxia Chen2, Xuemin Cheng2, Ya-Li Deng1, Dengfeng Dou2, Junli Feng1, Gary M Gallego1, Michael R Gehring1, Stephan K Grant1, Samantha Greasley1, Anthony R Harris1, Karen A Maegley1, Jordan Meier3, Xiaoyun Meng2, Jose L Montano3, Barry A Morgan4,2, Brigitte S Naughton1, Prakash B Palde1, Thomas A Paul1, Paul Richardson1, Sylvie Sakata1, Alex Shaginian2, William K Sonnenburg2, Chakrapani Subramanyam1, Sergei Timofeevski1, Jinqiao Wan2, Wen Yan1, Albert E Stewart1.   

Abstract

Two novel compounds were identified as Naa50 binders/inhibitors using DNA-encoded technology screening. Biophysical and biochemical data as well as cocrystal structures were obtained for both compounds (3a and 4a) to understand their mechanism of action. These data were also used to rationalize the binding affinity differences observed between the two compounds and a MLGP peptide-containing substrate. Cellular target engagement experiments further confirm the Naa50 binding of 4a and demonstrate its selectivity toward related enzymes (Naa10 and Naa60). Additional analogs of inhibitor 4a were also evaluated to study the binding mode observed in the cocrystal structures.
Copyright © 2020 American Chemical Society.

Entities:  

Year:  2020        PMID: 32550998      PMCID: PMC7294708          DOI: 10.1021/acsmedchemlett.0c00029

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  20 in total

1.  Human protein N-terminal acetyltransferase hNaa50p (hNAT5/hSAN) follows ordered sequential catalytic mechanism: combined kinetic and NMR study.

Authors:  Rune H Evjenth; Annette K Brenner; Paul R Thompson; Thomas Arnesen; Nils Åge Frøystein; Johan R Lillehaug
Journal:  J Biol Chem       Date:  2012-02-06       Impact factor: 5.157

2.  The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability.

Authors:  Frank H Niesen; Helena Berglund; Masoud Vedadi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  Monitoring drug target engagement in cells and tissues using the cellular thermal shift assay.

Authors:  Daniel Martinez Molina; Rozbeh Jafari; Marina Ignatushchenko; Takahiro Seki; E Andreas Larsson; Chen Dan; Lekshmy Sreekumar; Yihai Cao; Pär Nordlund
Journal:  Science       Date:  2013-07-05       Impact factor: 47.728

4.  Ligand binding efficiency: trends, physical basis, and implications.

Authors:  Charles H Reynolds; Brett A Tounge; Scott D Bembenek
Journal:  J Med Chem       Date:  2008-04-02       Impact factor: 7.446

5.  DNA Encoded Library Selections and Insights Provided by Computational Simulations.

Authors:  Alexander L Satz
Journal:  ACS Chem Biol       Date:  2015-07-27       Impact factor: 5.100

6.  What Do You Get from DNA-Encoded Libraries?

Authors:  Alexander L Satz
Journal:  ACS Med Chem Lett       Date:  2018-04-17       Impact factor: 4.345

Review 7.  First Things First: Vital Protein Marks by N-Terminal Acetyltransferases.

Authors:  Henriette Aksnes; Adrian Drazic; Michaël Marie; Thomas Arnesen
Journal:  Trends Biochem Sci       Date:  2016-08-03       Impact factor: 13.807

Review 8.  Protein N-terminal acetyltransferases in cancer.

Authors:  T V Kalvik; T Arnesen
Journal:  Oncogene       Date:  2012-03-05       Impact factor: 9.867

9.  Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase.

Authors:  Petra Van Damme; Rune Evjenth; Håvard Foyn; Kimberly Demeyer; Pieter-Jan De Bock; Johan R Lillehaug; Joël Vandekerckhove; Thomas Arnesen; Kris Gevaert
Journal:  Mol Cell Proteomics       Date:  2011-03-07       Impact factor: 5.911

10.  Two putative acetyltransferases, san and deco, are required for establishing sister chromatid cohesion in Drosophila.

Authors:  Byron C Williams; Carrie M Garrett-Engele; Zexiao Li; Erika V Williams; Elizabeth D Rosenman; Michael L Goldberg
Journal:  Curr Biol       Date:  2003-12-02       Impact factor: 10.834

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  6 in total

1.  Harnessing Ionic Selectivity in Acetyltransferase Chemoproteomic Probes.

Authors:  Yihang Jing; Jose L Montano; Michaella Levy; Jeffrey E Lopez; Pei-Pei Kung; Paul Richardson; Krzysztof Krajewski; Laurence Florens; Michael P Washburn; Jordan L Meier
Journal:  ACS Chem Biol       Date:  2020-12-29       Impact factor: 5.100

Review 2.  DNA-Encoded Chemistry: Drug Discovery from a Few Good Reactions.

Authors:  Patrick R Fitzgerald; Brian M Paegel
Journal:  Chem Rev       Date:  2020-10-12       Impact factor: 72.087

3.  N-Terminal Acetyltransferases Are Cancer-Essential Genes Prevalently Upregulated in Tumours.

Authors:  Costas Koufaris; Antonis Kirmizis
Journal:  Cancers (Basel)       Date:  2020-09-15       Impact factor: 6.639

4.  Expanding the DNA-encoded library toolbox: identifying small molecules targeting RNA.

Authors:  Qiuxia Chen; You Li; Chunrong Lin; Liu Chen; Hao Luo; Shuai Xia; Chuan Liu; Xuemin Cheng; Chengzhong Liu; Jin Li; Dengfeng Dou
Journal:  Nucleic Acids Res       Date:  2022-07-08       Impact factor: 19.160

5.  Highly efficient on-DNA amide couplings promoted by micelle forming surfactants for the synthesis of DNA encoded libraries.

Authors:  James H Hunter; Matthew J Anderson; Isaline F S F Castan; Jessica S Graham; Catherine L A Salvini; Harriet A Stanway-Gordon; James J Crawford; Andrew Madin; Garry Pairaudeau; Michael J Waring
Journal:  Chem Sci       Date:  2021-06-22       Impact factor: 9.825

Review 6.  Opportunities for Expanding Encoded Chemical Diversification and Improving Hit Enrichment in mRNA-Displayed Peptide Libraries.

Authors:  Paddy R A Melsen; Ryoji Yoshisada; Seino A K Jongkees
Journal:  Chembiochem       Date:  2022-02-18       Impact factor: 3.461

  6 in total

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