We study the molecular dynamics and structures of the guest-host complexes of cucurbituril, CB[7], with spin probes through the conventional electron spin resonance (ESR), saturation transfer ESR (STESR), density functional theory (DFT), and molecular dynamics (MD) computations. Protonated TEMPOamine (I), a derivative of TEMPO having a positive charge and an octyl group on the quaternary nitrogen atom (II), and the neutral spin-labeled indole (III) are used as guests. To eliminate the overall complex rotation, the solutions of complexes in a solid CB[7] matrix were prepared. Resultantly, for all of the spin probes, the combined study of the conventional ESR and STESR spectra indicates the librational character of the rotational motion within the CB[7] cavity as opposed to the diffusional rotation over the whole solid angle. The kinetic accessibilities of the reporter NO groups to the paramagnetic complexes in aqueous solutions, determined by Heisenberg exchange broadening of the ESR spectra, together with the environment polarities from the hyperfine interaction values, as well as DFT computation results and MD simulations, were used to estimate the spin probe location relative to CB[7]. Utilizing the concept of the aqueous clusters surrounding the spin probes and CB[7] molecules and MD simulations has allowed the application of DFT to estimate the aqueous environment effects on the complexation energy and spatial structure of the guest-host complexes.
We study the molecular dynamics and structures of the guest-host complexes of cucurbituril, CB[7], with spin probes through the conventional electron spin resonance (ESR), saturation transfer ESR (STESR), density functional theory (DFT), and molecular dynamics (MD) computations. Protonated TEMPOamine (I), a derivative of TEMPO having a positive charge and an octyl group on the quaternary nitrogen atom (II), and the neutral spin-labeled indole (III) are used as guests. To eliminate the overall complex rotation, the solutions of complexes in a solid CB[7] matrix were prepared. Resultantly, for all of the spin probes, the combined study of the conventional ESR and STESR spectra indicates the librational character of the rotational motion within the CB[7] cavity as opposed to the diffusional rotation over the whole solid angle. The kinetic accessibilities of the reporter NO groups to the paramagnetic complexes in aqueous solutions, determined by Heisenberg exchange broadening of the ESR spectra, together with the environment polarities from the hyperfine interaction values, as well as DFT computation results and MD simulations, were used to estimate the spin probe location relative to CB[7]. Utilizing the concept of the aqueous clusters surrounding the spin probes and CB[7] molecules and MD simulations has allowed the application of DFT to estimate the aqueous environment effects on the complexation energy and spatial structure of the guest-host complexes.
Cucurbit[n]urils (CB[n]), a new
class of supramolecular hosts, have attracted significant attention
over the past years, owing to their capability to form strong and
selective host–guest complexes with various organic molecules
and cations in aqueous media.[1−3] It has also been demonstrated
that the photophysical properties, including fluorescence, of guest
molecules often change substantially upon inclusion into the CB[n] cavities.[3−7] These properties allow the utilization of CB[n]
as artificial molecular receptors in chemo- and biosensors, vehicles
for drug transport, light-driven molecular switches, motors, etc.[8−14]In addition, the fundamental studies on the structure and
dynamics
of the cucurbituril host–guest complexes can provide important
insights into the nature of noncovalent interactions. Various experimental
and computational methods have been employed to study host–guest
CB[n] complexes. The use of spin probes as guests
is attracting special interest because the analysis of the electron
spin resonance (ESR) spectra allows one to investigate the structure,
binding thermodynamics, reaction kinetics, and environment polarity
of the spin probe guests in the host cavities. Several papers on the
spin probe–cucurbituril complexes have been published.[15−22] Of principal importance is the information on the dynamic properties
of the complexes, including the molecular mobility of the guests within
the host cavities and kinetic accessibility to water-soluble reagents.
However, these properties have not been sufficiently explored by ESR
as far as we know.[22−25] Recently, we studied, by ESR, the structure and molecular dynamics
of the guest–host complex of the spin probe, TEMPO, with cucurbiturilCB[7].[23]In this work, we continue
the ESR study on the molecular dynamics
and structure of the host–guest complexes of CB[7] with several
nitroxide spin probes with different chemical structures, both in
an aqueous solution and the solid phase. Neutral and positively charged
nitroxides of different sizes and shapes were chosen, including TEMPOamine
in its protonated form (I); cationic nitroxide, 4,4(N,N-dimethyl N-octyl ammonium-2,2,6,6-tetramethyl-piperidinyl-N-oxy bromide) (II); and spin-labeled indole,
2,2,4,4-tetramethyl-1,2,3,4-tetrahydro-γ-carboline-3-oxyl (III) (see the chemical structures below).To study the
rotational dynamics of the spin probes within the
guest–host complexes and eliminate the effects of both their
overall rotation and magnetic dipole–dipole/exchange interactions
between the complexes, the diluted solid solutions of the complexes
spin probe@CB[7] in the CB[7] matrix have been prepared. It was shown
that the formation of the CB[7] matrix results in the hydrophobic
environment for the embedded complexes and a decrease in the environment
polarity for spin probes inside the CB[7] cavities, most probably
owing to the removal of water on matrix formation. The combination
of ESR and the saturation transfer ESR (STESR) spectra is applied
to determine the character of the spin probe rotational motion inside
the CB[7] hosts embedded in the solid CB[7] matrix.The information
on the spin probe location relative to the CB[7]
cavity has been deduced from the polarity parameters of the NO group
environment. These parameters have been obtained from the measurements
of the isotropic hyperfine interaction (hfi) in aqueous solutions
and anisotropic hfi for the immobilized complexes in the CB7 matrix.
Additionally, similar information has been deduced from the kinetic
accessibilities of the reporter NO groups to the paramagnetic complexes
in aqueous solutions using the Heisenberg exchange (HE) broadening
of the ESR spectra.Notably, the additional application of the
NMR method is limited
in the study of these complexes due to the paramagnetic nature of
the guests.Along with the experimental studies, we perform
density functional
theory (DFT) and molecular dynamics (MD) computations to determine
the spatial structures, formation energies of the complexes, and the
changes in the atomic charge and the spin density distributions on
the complex formation in the version of the DFT method that considers
both the quantum mechanical electrostatic effects and the van der
Waals (vdW) interactions. In our opinion, the hydrophobic environment
of the complexes in the solid CB[7] matrix, in the first approximation,
makes these computations possible, which are technically applicable
to the complexes in the gas phase. The effects of surrounding water
molecules have been simulated by considering the aqueous clusters
that incorporate the spin probes and complexes.
Experimental
and Computational Methods
Materials
TEMPOamine
and cucurbiturilCB[7] were purchased from Sigma-Aldrich and used as received. The
protonated form of TEMPOamine (I) was prepared by dissolving
its powder in water at a pH of 5.5. The compound 4,4(N,N-dimethyl-N-octyl ammonium-2,2,6,6-tetramethyl-piperidinyl-N-oxy bromide), (Cat8) (II), was a gift from
Dr. G.B. Khomutov (Physics Department of the Moscow State University).
The spin-labeled indole, 2,2,4,4-tetramethyl-1,2,3,4-tetrahydro-γ-carboline-3-oxyl
(III) (see Figure ), was synthesized by Dr. A.B. Shapiro from the Institute
of Biophysical Chemistry, RAS.[26]
Figure 1
Structures
of spin probes I–III.
Structures
of spin probes I–III.
Preparation of the Complexes
Aqueous
solutions of the spin probes and their complexes with CB[7] were prepared
using water purified in a Millipore Model Direct-Q UV purification
system. Solutions of I and complex I@CB[7]
were prepared in a 2 mM Tris buffer at pH 5.0 or by adding HCl to
provide the protonated form of tempamine. The solutions of II and complex II@CB[7] were prepared in water. Due to
the very low solubility of spin probe III in water, a
1% ethanol–water mixture, instead of water, was used for the
preparation of the solutions of III. For the preparation
of the complexes in the solid CB[7] matrix, the solutions of the spin
probes and CB[7] were mixed in a molar ratio of 1:60, whereupon the
mixture was slowly evaporated and dried at room temperature to a constant
weight.
ESR Measurements
The ESR spectra
were recorded at a microwave frequency of 9.2 GHz on a Bruker EPR-200
spectrometer equipped with a nitrogen gas flow temperature unit. Sample
capillaries were positioned along the symmetry axis of the standard
4 mm quartz ESR sample tube that contained mineral oil for thermal
stability. The root-mean-square microwave magnetic field ⟨B12⟩1/2 measurement
for a “point” sample of aqueous peroxylamine disulfonate
with known T1 and T2(24) values gave a maximum value
of 0.51 G. The low-power ESR spectra were recorded at a power of 26
dB (H1 ≅ 0.0255 G) and a small
modulation amplitude, which rules out spectral distortion. The STESR
spectra, i.e., the ESR absorption spectra detected on the second harmonics
of modulation in the 90° phase with a modulation field (V2′), were recorded under partial microwave saturation, essentially
as described in ref (27). The microwave amplitude (H1) was 0.25
G; the modulation frequency and amplitude were 50 kHz and 5 G, respectively.
The smaller modulation amplitudes, Hm =
1.5 and 3 G, were also used to check the weak dependence of the V2′ line shape on the Hm value. The 90°
modulation phase was carefully adjusted by the zero method.[27] The temperature dependencies of the ESR and
STESR spectra of the complexes were studied in the range of 140–340
K.
ESR Spectral Simulations
The nonlinear
least-squares analysis of the low-power ESR spectra based on the stochastic
Liouville equation[28] was performed using
a fitting program by Budil et al.[29] The
hyperfine Azz and gzz tensor components required for the spectral simulations
were measured from the rigid-limit ESR spectra at 77 K.The
STESR spectra detected on the second modulation harmonic were simulated
using an approach based on solving Bloch equations coupled with uncorrelated
jump rotational diffusion. This approach was developed in refs (30−34) and is partly presented in SI2.
DFT Computations
The computation
of the structures and formation energies of the complexes was carried
out by the DFT-D3 method with the full geometry optimization using
the Perdue–Burke–Ernzerhof (PBE) functional in the SVP
basis with the ORCA program package, version 3.01. The PBE functional
opposite to the BLYP (B3LYP) functional has no empirical fitting parameters.
We used two program packages adapted for parallel computing: “Priroda”[35,36] and “ORCA”.[37] The former
was used to preliminarily optimize the geometry of the starting molecules
and complexes and estimate the energy minima, which should not lead
to imaginary vibrational frequencies. The use of the Priroda package,
with a three-exponential basis of Gaussian functions,[36] specifically optimized for use with the PBE functional,
allowed performing fast analytical calculations of the Hessian and
vibrational frequencies. The ORCA package, version 3.01,[37] with an SVP basis set,[38] was used to conduct a full geometry optimization of the complexes,
considering the dispersion contribution to the complex formation energy
by the Grimme method D3[39] starting from
the structures obtained in the first stage of the calculations.The contribution of the van der Waals (vdW) interaction to the complex
formation energy was considered using Grimme’s dispersion term[39] that was added to the full electrostatic energy.
Thus, the total complex formation energy (ΔEtot) is given as follows: ΔEtot = Eel.stat + EvdW, where each term of the equation is determined from
the relationEcomp, ESL, and ECB[7] are
the computed energies of the complex, spin probe, and CB[7], respectively.
HyperChem 8.0 and Chemcraft packages were utilized to prepare the
starting files and visualize the results.
Molecular
Dynamics Simulations
MD
simulations were executed by the GROMACS 2019.4 program in the AMBER
force field GAFF. The water was simulated by the TIP3P model. The
system composition was as follows: CB7 (1 molecule), spin probe II with a counterion Cl– (1 molecule), or
spin probe III. A total of 2000 water molecules formed
a triclinic (rhombidodecahedron) box, which was optimized for the
solvation of a single object. The computation time was 100 ps. The
NPT ensemble corresponded to normal conditions T =
298.15 K and P = 1 bar. The Parinello–Rahman
barostat had 0.1 ps relaxation times. The long-distance electrostatics
was executed by the particle mesh Ewald summation. The short-distance
electrostatic and VdW interactions were confined within 15 Å.
The average system volume was 154 nm3.
Results and Discussion
Properties of the CB[7]–Guest
Complexes
in Aqueous Solutions
Complex Formation
The dependencies
of the ESR spectra on the CB[7] concentration were studied for all
of the spin probes. The 0.2 mM solutions of I, II, and III were mixed with equal volumes of
CB[7] solutions having different concentrations of CB[7] in the range
of 0.2–6.0 mM. (After mixing equal volumes of a spin probe
and CB[7] solutions, all concentrations decreased by 2 times the final
CB[7] concentrations and effects of the concentration change are shown
in Figures S1a,b, S2a,b, and S3a,b, SI1.)
All of the mixtures were incubated for 1 h and stirred at 60 °C.For all of the CB[7] concentrations, the ESR line shapes correspond
to a rapid rotation region (Figure ).
Figure 2
Experimental ESR spectra of complexes I@CB7, II@CB[7], and III@CB7 in aqueous solutions. For
all of the complexes, the guest concentration was 0.1 mM and the host
concentration was 3 mM.
Experimental ESR spectra of complexes I@CB7, II@CB[7], and III@CB7 in aqueous solutions. For
all of the complexes, the guest concentration was 0.1 mM and the host
concentration was 3 mM.The complex formation
was monitored by measuring the effective
rotational correlation time of the spin probe (τR) and the isotropic N14 hfi constant (aN), which is sensitive to the polarity of the spin probe
environment.The τR value was estimated in
terms of the isotropic
rotation using the well-known expression from the second-order perturbation
theory.[40] The use of standard values for
the hyperfine (hfi) and g tensor components for a
nonpolar medium leads to the relationwhere ΔH+1 is the pp line width
of the hfi component m = +1
and I±1 is the intensity of the hfi
components for m = ±1. For all spin probes I–III, an increase in the CB[7] concentration
results in an increase in τR, owing to the successive
binding of the free spin probes to CB[7] (see SI1).Apart from an increase in τR,
a decrease in aN was observed for I and III, which signifies a decrease in the
local polarity of the
NO group environment on the complex formation. For spin probe II, unlike the cases of I and III, an increase in aN from 16.72 to 16.86
G was observed. The τR and aN dependencies reached plateau values at the CB[7]/II molar ratio ≅1 (see SI1), which
suggests the formation of the 1:1 complex. For spin probes I and chiefly III, the concentration dependencies of
τR and aN are indicative
of a rather weak binding because the g/h complex is completely formed
only at large CB[7] concentrations. The 1:1 stoichiometry for these
complexes was deduced from the careful examination of the relationships
of the host and guest dimensions (see Section 3.4).
Polarity of the NO Group Environment in
Aqueous Solutions
The ESR spectra of the guest–host
complexes of CB[7] with spin probes I–III were recorded in aqueous solutions in a large molar excess of CB[7]:
the spin probe and CB[7] concentrations were 0.1 and 3 mM, respectively.
This CB[7]/spin probe molar ratio corresponded to the complete complexation
at 292 K (see the concentration dependencies of τR and aN in SI1).The dependence of the isotropic hyperfine constant (aN) on the environment polarity is due to the
averaged electric fields associated with nearby molecules and groups,
which affect the spin density on the nitrogen atom in the NO fragment
of a spin probe.[41] The main contributions
to this dependence are from the sum of two terms: van der Waals interactions
of the NO group with the environment and hydrogen bonding with the
adjacent proton donor molecules. As a consequence, the aN values may provide information on the location of the
spin probe. Therefore, we measured the isotropic hyperfine constants
(aN) for all of the spin probes in the
CB[7] complexes (aNcb) and, for reference, in pure solvents as
well. For the polar solvents, we used water or a 50% v/v glycerol/water
mixture (aNW); for the nonpolar solvents, we used toluene
(aNT). From these data, we constructed a dimensionless polarity
parameter, which allows the comparison of the polarities
of the NO environment for different spin probes in the complexes.
For all of the spin probes in an aqueous environment, psolut = 1; in toluene, psolut = 0. The psolut values for all of the
CB[7] complexes in water are given in Table .
Table 1
Isotropic Hyperfine
Constants (aN(G)) for the CB[7] Complexes
(aNcb)a
spin probes
complex with CB[7]
glycerol/water 50/50 v/v
water aNW
toluene aNT
psolut
I
16.29 ± 0.02 (pH 5)
16.70 ± 0.03
16.85 ± 0.015 (pH
5)
15.42 ± 0.02
0.61 ± 0.04 (pH 5)
II
16.86 ± 0.02
16.57 ± 0.03
16.72 ± 0. 015
15.41 ± 0.02
1.107 ± 0.04
III
16.88 ± 0.02
16.90 ± 0. 015
15.35 ± 0.02
0.987 ± 0.04
Free spin probes
in water or a 50/50
v/v glycerol/water mixture (aNW) and in toluene (aNT) were determined
as a distance between the hyperfine components, m = +1 and 0, at 292 K. The polarity parameters, psolut, in the aqueous solutions of the spin probe@CB[7]
complexes were determined from eq .
Free spin probes
in water or a 50/50
v/v glycerol/water mixture (aNW) and in toluene (aNT) were determined
as a distance between the hyperfine components, m = +1 and 0, at 292 K. The polarity parameters, psolut, in the aqueous solutions of the spin probe@CB[7]
complexes were determined from eq .As seen
in Table , the aN and psolut values
for I in the I@CB[7] complex at
pH 5 correspond to the moderately polar environment (psolut = 0.61). This result with allowing for the probe
dimensions can be preliminarily interpreted in terms of the structure
in which the NO group is located inside the CB[7] near carbonyl dipoles,
while the protonated charged amine group of I resides
nearby the negatively charged portal region of another portal of the
same CB7 molecule (we discuss its structure in more detail together
with other results in Sections and 3.3 and SI).As noted, the aN values for II in the II@CB[7] complex,
unlike that for I@CB[7], increase with the CB[7] concentrations,
so at large CB7 concentrations,
these values become greater than for the free probe in an aqueous
environment (see Figures S1–S3 and Table ). Besides, as already
noted, the rotational correlation time, τR, increases
with the CB7 concentration. These dependencies suggest that the NO
group of II is bound to the highly polar region of CB7
or exposed in an aqueous environment. However, these dependencies
do not allow the location of II relative to CB[7] to
be completely specified (see also Sections and 3.3 and SI).Notably, the aN dependencies on the
CB[7] concentration were obtained earlier for the structural analogue
of II, Cat1.[16]II differs from Cat1 by the presence of an octyl substituent bound
to the quaternary nitrogen instead of the methyl group in Cat1. Based
on the above dependencies and results of the 1HNMR titration
of the diamagnetic analogue of Cat1, Jayaraj et al.[16] proposed a model in which the trimethylammonium group of
Cat1 is bound to a portal of CB[7], while the rest of Cat1 including
the piperidine-N-oxyl group is exposed to water.
The presence of a hydrophobic octyl group in II might
alter the spin probe location compared with the case of Cat1. Therefore,
to better understand the guest location in II@CB[7] and
also in two other complexes, we studied the Heisenberg spin exchange
(HE) of these complexes with a water-soluble paramagnetic reagent
and performed the DFT and MD computations of their structures (see
below).The aN and psolut values for spin probe III in the CB[7]
complex correspond
to the aqueous environment of the NO group, as seen in Table . This means that two modes
of complex formation, in principle, are possible: external complexation
or the location of III inside the CB[7], leaving the
NO group bulk exposed.
Accessibility of the
Reporter NO Group for
the Water-Soluble Paramagnetic Complexes
The measurement
of the exchange interaction of the reporter NO group with water-soluble
paramagnetic compounds is a well-known approach to determining the
kinetic accessibility of the NO group to water-soluble reagents.[42] Therefore, to determine the location of this
group relative to the surrounding water, we used the chromium trioxalate
anion, Cr(Ox)33–, which is
formed in the aqueous solution of potassium chromium(III) oxalate
trihydrate (CrOx). Crox is known to produce maximum exchange broadening
for free nitroxides.[43] The advantage of
this broadening reagent is also the existence of a rather strong negative
charge; therefore, it is expected that the Crox anions would not be
bound to the CB[7] host having a negative surface electrostatic potential
on the carbonyl rims. The values of the exchange broadening produced
by Crox for the complexes of I–III with CB[7] and free spin probes I–III are given in Table .
Table 2
HE Broadening of the ESR Spectra Produced
by Crox in an Aqueous Solution for Complexes I@CB[7], II@CB[7], and III@CB[7] (ΔHcompex, Δωcompex (s–1)) and Free Spin Probes I–IIIa
Crox (mM)
complex
ΔHfreeex(G), Δωfreeex (s–1)
ΔHcompex (G), Δωcompex (s–1)
ΔHcompex/ΔHfreeex
5
I–CB[7]
1.58 ± 0.02, 2.41 × 107
0.34 ± 0.02, 0.52 × 107
0.215 ± 0.04
5
II–CB[7]
1.41 ± 0.02, 2.15 × 107
1.09 ± 0.02, 1.66 × 107
0.77 ± 0.04
5
III–CB[7]
0.56 ± 0.02, 0.99 × 107
0.57 ± 0.02, 1.00 × 107
1.02 ± 0.04
ΔHfreeex (G) and Δωfreeex (s–1) are
in Gauss and s–1, respectively. Δωex = γ · ΔHex;
γ is the electron gyromagnetic ratio, and γ = 1.76 ×
107 s–1 G–1. T = 292 K.
ΔHfreeex (G) and Δωfreeex (s–1) are
in Gauss and s–1, respectively. Δωex = γ · ΔHex;
γ is the electron gyromagnetic ratio, and γ = 1.76 ×
107 s–1 G–1. T = 292 K.As
seen in Table , free I and II spin probes have similar
HE broadening (ΔHcompex) values, while the ΔHcompex value
for bound II is much greater than that for bound I. The accessibility of Crox to the NO group for a particular
spin probe in the complex can be estimated by obtaining the ratio
of the HE broadening in the complex to that of the free probe (ΔHcompex/ΔHfreeex). Noticeably, the accessibility parameter
of Crox for the NO group in the I@CB[7] complex is significant,
although it is rather far from unity, which is indicative of the location
of the NO group within the cavity not close to the portal. The accessibility
to Crox is much greater for II in the II@CB[7] complex than for I in the I@CB[7]
complex. The latter result suggests that the location of the NO group
in the II@CB[7] complex is similar to that for Cat1.[16] The ratio, ΔHcompex/ΔHfreeex, is less than unity, which can be attributed to the steric hindrance
against the interactive contact of Crox with the NO group, owing to
the presence of CB[7] and binding II. One can see in Tables and 2 that there is a qualitative correlation between the parameters
of polarity and accessibility for both I@CB[7] and II@CB[7] complexes, although the absolute values of these
parameters appreciably differ for the two complexes.The exchange
broadening for the III@CB[7] complexes
is practically the same as for free probe III. Thus,
the exchange broadening data for the III@CB[7] complexes
also qualitatively agrees with the polarity data. These data indicate
the high degree of accessibility to water molecules by the NO groups
in the III@CB[7] complexes. The rather small decrease
in aN and an increase in τR with an increase in CB7 concentration together with very low solubility
of III in water support the formation of the “endo”
complex. Also, as opposed to I and II, spin
probe III has no positive charge to be bound to CB7.
However, in principle, these results cannot exclude the possibility
of the formation of the exo-complex where spin probe III is bound outside the CB7 cavity. (The locations of I–III in the CB7 complexes are finally discussed
in Section 3.4.)
Properties of the CB[7]–Spin Probe
Complexes in a Solid Phase
Figure shows that the ESR line shapes for all of
the spin-labeled guests in the temperature range of 142–345
K correspond to the slow rotation regime, where the most prominent
change in the ESR spectra is a decrease in the splitting between the
outer extrema, 2Azz′, with an increase in temperature. Correspondingly,
a decrease in the motion-sensitive parameter, S = Azz′/Azz, also occurs (where Azz is the rigid-limit value measured at 77 K).
Figure 3
Experimental
(red lines) and best simulated (black lines) ESR spectra
of complexes I@CB[7], II@CB[7], and III@CB[7] in the solid solution in the CB[7] matrix. The concentrations
of the spin probes are 0.1 mM; the molar ratio of CB[7] to spin probes
is 60.
Experimental
(red lines) and best simulated (black lines) ESR spectra
of complexes I@CB[7], II@CB[7], and III@CB[7] in the solid solution in the CB[7] matrix. The concentrations
of the spin probes are 0.1 mM; the molar ratio of CB[7] to spin probes
is 60.
Polarity of the NO Group
Environment for
the Complexes in the Solid CB[7] Matrix
We determined the
polarity parameters for spin probes I–III in complexes with CB[7] by measuring the distance between the outer
extrema in their ESR spectra at 77 K, which is equal to the doubled
z-components of the hyperfine tensors, Azz, with the assumption of no motion. The polarity parameters (psolid) were defined similarly to those for the
aqueous solution (see Tables and 3)
Table 3
z-Components of the A Tensors (Azz) for the Complexes
with CB[7] (Azzcb), Free Spin Probes in the 50/50 v/v Glycerol–Water
Mixture (AzzW) and in Toluene (AzzT)
spin probes
complex with
CB[7] in the CB[7] matrix
glycerol/50/50
v/v
water
toluene
psolid
I
35.03 ± 0.05
35.8 ± 0.05
34.5 ± 0.05
0.41 ± 0.10
II
36.45 ± 0.05
36.67 ± 0.05
37.01 ± 0.1a
36.17 ± 0.05
0.33 ± 0.10
III
35.3 ± 0.05
36.7 ± 0.05
35.25 ± 0.05
0.03 ± 0.10
Determined from the distances between
the outer extrema of the ESR spectra at 77 K, and the environment
polarity parameters of spin probes (psolid) in the CB[7] complexes in the solid CB[7] matrix. The Azz values were determined by extrapolation of the linear
dependencies, Azz vs aN, for the glycerol/water solutions to the pure water.
Determined from the distances between
the outer extrema of the ESR spectra at 77 K, and the environment
polarity parameters of spin probes (psolid) in the CB[7] complexes in the solid CB[7] matrix. The Azz values were determined by extrapolation of the linear
dependencies, Azz vs aN, for the glycerol/water solutions to the pure water.As seen in Tables and 3, the polarity parameters in the solid
CB[7] matrix, psolid, are considerably
smaller than those in the aqueous solutions of the complexes, psolut. These differences most probably are due
to the decrease in the water content around the NO groups inside the
CB[7] hosts that results from the preparation of the solid samples.
It is noteworthy that a similar decrease in Azz values was observed for lipid spin labels embedded in hydrated
phospholipid multilayers on their dehydration and subsequent measurement
at 77 K.[41]We also found out that
in the solid samples, a new ESR signal appears
with an increase in temperature, the line shape of which corresponds
to a rapid rotation regime and the aN values
(15.3–15.5 G) correspond to the hydrophobic environment (see SI4). This signal most probably belongs to the
nonbonded spin probes dissociated out of the complexes, which should
be located in the interstitial sites in the solid CB[7] matrix. Thus,
these ESR signals report on the hydrophobic environment inside the
solid CB[7] matrix.The decrease in the water content around
the NO groups may result
in some changes in the location of the bound spin probe inside the
CB[7] cavity compared with the case in the aqueous solution. To determine
the locations of the NO groups and the whole spin probe molecules,
DFT computations were also performed for the complexes without water
and in the presence of water, which were modeled using water clusters
(see Sections 3.4 and SI3).
Rotational Mobility of
Spin Probes I–III in the CB[7] Complexes Incorporated
into the
Solid CB[7] Matrix
The decrease in the water content around
the NO groups may not only immobilize the CB[7] hosts and shift the
spin probe location but also cause some change in the molecular dynamics
of a spin probe relative to the CB[7] host. It is of great interest
to investigate the character of the spin probe motion in such a system.First, we carried out the spectral simulations in terms of the
Brownian rotational diffusion model over the full solid angle for
the whole indicated temperature range. The input parameters for the
simulations, the Azz and gzz tensor components, were determined from the ESR spectra
recorded at 77 K (see Azz values in Table ).The experimental
and best simulated ESR spectra of the I@CB[7], II@CB7, and III@CB7 complexes at
different temperatures are given in Figure .From these figures, it can be observed
that, generally, there is
a satisfactory agreement between the experimental and simulated ESR
spectra. However, as was emphasized earlier,[24,25,34] the parameters of the molecular rotation
of the spin probes, rotational frequencies, and angular amplitudes
cannot be determined unambiguously using the Azz′ (or S) values, since the same Azz′ or S values can be obtained by varying the slow rotation frequency
in the full solid angle (4π) or by varying the angular amplitude
in the fast librations model. In particular, it is difficult to correctly
and unambiguously choose between these two limiting models of molecular
motion for the often-occurring case of high S values
(S ≥ 0.9) from the simulations of the conventional
first-harmonic ESR spectra because of the large inhomogeneous broadening.
However, this choice, as shown below, can be made by STESR.[34]Previously, STESR was successfully applied
to the study of the
“super slow” molecular rotations with correlation times
in the range of 10–6–10–3 s, to which the conventional ESR spectra are not sensitive.[27] The approach used in our study is based on the
fact that the STESR line shapes, i.e., the second harmonics absorption
signals detected in the 90° phase (out of phase) relative to
the phase of the modulation field under a moderate microwave saturation
(V2′), differ substantially for the two limiting motion
models: (1) fast librations with τR ≤ 1 ns
and limited angular amplitude and (2) unrestricted slow diffusional
rotations in the whole solid angle or of axial diffusional rotation
with τR ≅ 10–8–10–6 s.[24,25,34] For the first model, the V2′ line shape is very similar
to that for the no-motion absorption line shape, whereas for the second
model, the V2′ line shape is essentially different,
being similar to the second derivative of the absorption signal. The V2′ line shapes simulated for the cone angles of 25 and 90° and
different rotational frequencies (f = τR–1) in the range of 105–1010 s–1 are illustrated in Figure .
Figure 4
Simulated V2′ ESR
spectra for different rotation
frequencies (f) in terms of the uncorrelated jump
model for the reorientations of the magnetic Z-axis
inside the cone angles of (A) 25° and (B) 90°.
Simulated V2′ ESR
spectra for different rotation
frequencies (f) in terms of the uncorrelated jump
model for the reorientations of the magnetic Z-axis
inside the cone angles of (A) 25° and (B) 90°.For the quantitative estimates of the effects of the rotational
frequency and angular amplitude on the V2′ line shape,
we used the dimensionless ratio, L″/L (see Figure ) introduced earlier[27] to characterize
the sensitivity of the V2′ spectra to very slow rotational
motions. L″ is the amplitude in the low-field
region corresponding to the maximum rate of variation of the resonance
field vs the angle (Ω) between the magnetic field direction
and the principal z-axis of the A and g tensors (dHres/dΩ). dHres/dΩ is maximum
at Ω ≅ 45°, and L is the amplitude
corresponding to dHres/d(cos Ω)
= 0 and Ω ≅ 0. It was shown,[24,25,27] for the model of the slow rotation in the
whole cone angle (π/2), that the L″/L ratio decreases with a decrease in τR, and for τR ≤ 10–7 s,
it becomes negative, while the V2′ line shape itself approaches
that of the second derivative of the absorption signal. The dependencies
of the L″/L ratio on f = τR–1 for different cone angles including Δθ
= π/2 are presented in Figure .
Figure 5
Dependencies of the diagnostic parameter, L///L, on the rotational frequency (f) for different cone angles.
Dependencies of the diagnostic parameter, L///L, on the rotational frequency (f) for different cone angles.The V2′ line shape for the model of small amplitude
librations is observed to be similar to that for the absence of motion,
i.e., it is very close to the absorption line shape for the powder
sample for which the ratio L″/L ≥ 2. An increase in the libration amplitude results in an
increase in L″/L for high
rotation frequencies in the range of 108–1010 s–1 (see Figure ).The qualitative explanation of the
decrease in the ratio, L″/L, with increasing rotational
frequency is as follows. The out-of-phase absorption signal (the imaginary
component of the absorption), V2′, records the delay effects
of the response of the spin system on the modulated magnetic field.
The amplitude of the V2′ response depends on the product,
ωmTrel; ωm = 2π · ν, where ν is the modulation frequency.
ωmTrel = ωm/Trel–1, where Trel–1 includes
all of the relaxation processes, particularly the rotational diffusion
that results in the spectral diffusion out of the resonance position
and a decrease in the signal amplitude. The effect of the spectral
diffusion should be maximum at point L″ and
minimum at point L, where dHres/d(cos Ω) = 0. An increase in the rotational
frequency results in an increase in the spectral diffusion, which,
accordingly, results in a decrease in the L″/L ratio. A further increase in the rotational frequency
at f ≫ ωm leads first to
the averaging of the signal over the rotational motion and subsequently
to the response of the averaged signal to the magnetic field modulation,
which results in an increase in the L″/L ratio. The effect of the spectral diffusion also increases
with an increase in the cone angle, resulting in a decrease in parameter L″/L.The V2′ spectra
of the inclusion complexes
of I–III with CB[7] were recorded
at different temperatures in the range of 245–345 K. The values
of the microwave field (H1) and modulation
field (Hm) were 0.25 and 5 G, respectively.
The temperature dependencies of the V2′ spectra
for all three spin probes are presented in Figure .
Figure 6
Temperature dependencies of the V2′ STESR
spectra
of complexes I@CB[7], II@CB[7], and III@CB[7] in the solid CB[7] matrix. The spin probe concentrations
are 0.1 mM; the molar ratio of CB[7] to spin probes I, II, and III is 60:1. The magnetic field
modulation frequency and amplitude are 50 kHz and 5 G, respectively;
the microwave field amplitude is 0.25 G.
Temperature dependencies of the V2′ STESR
spectra
of complexes I@CB[7], II@CB[7], and III@CB[7] in the solid CB[7] matrix. The spin probe concentrations
are 0.1 mM; the molar ratio of CB[7] to spin probes I, II, and III is 60:1. The magnetic field
modulation frequency and amplitude are 50 kHz and 5 G, respectively;
the microwave field amplitude is 0.25 G.As noted above, the R⊥ values
obtained from the simulations of the conventional first-harmonic ESR
spectra in terms of the Brownian rotation model are in the range of
106.5–107.5 s–1. Simultaneously,
it follows from the V2′ simulations (see Figure ) that the diffusional rotation
in the full cone angle (Δθ = π/2) with frequencies
in the range of 106.5–107.5 s–1 should lead to approximately zero or negative L″/L values. However, the experimental L″/L values for the complexes of I–III with CB7 in the temperature ranges
studied are much greater than the above values: 1.06–0.79 for I@CB7, 0.97–0.65 for II@CB7, and 1.41–0.775
for III@CB7 (see Figure ). These experimental L″/L values correspond to the frequencies in the range of 105–3 × 105 s–1 for
the overall Brownian rotation in the full solid angle (see Figure ). Thus, there exists
an obvious contradiction between the rotational frequencies determined
from the conventional first-harmonics ESR and those from the STESR
spectra. This contradiction indicates that the model of slow Brownian
rotation in the whole solid angle is not adequate for these complexes.
Conversely, the model of the fast rotations having restricted angular
amplitude (fast rotations in a cone) can be consistent with both experimental
ESR and STESR spectra.Admittedly, in terms of the libration
model, the averaged angular
amplitudes of libration of the z-axis can be estimated
from the experimental first-harmonic ESR spectrawhere A⊥A⊥ is the averaged value of the
perpendicular component of the A tensor, A⊥ = (A + A)/2, in
the absence of rotational motion (at 77 K). It is difficult to precisely
determine the A⊥ value from our
experimental ESR spectra. The typical A⊥ values for the six-membered piperidine oxide radicals vary in a
rather narrow range of 6–7 G; moreover, the Δθ
values determined in eq are weakly dependent on the A⊥ values in the above range. Therefore, we can insert A⊥ = 6 G. The Azz′ and Azz values were determined as a half separation between
the outer extrema of the ESR spectra. The Δθ values calculated
in eq using the experimental A components for the complexes
of I–III with CB[7] are given in Figure .
Figure 7
Temperature dependencies
of the cone angles (amplitudes) of the
libration motion for spin probes I–III in the guest–host complexes with CB[7] embedded into the
CB[7] matrix. The spin probe/CB[7] molar ratio is 1:60.
Temperature dependencies
of the cone angles (amplitudes) of the
libration motion for spin probes I–III in the guest–host complexes with CB[7] embedded into the
CB[7] matrix. The spin probe/CB[7] molar ratio is 1:60.The obtained Δθ values should agree with both
the conventional
ESR and STESR spectra. Next, using the above Δθ values
and the calibration dependencies in Figure , we can, in principle, estimate the rotational
frequencies for librational motion at different temperatures. Unfortunately,
the calibration curves in Figure are not exactly quantitative dependencies because
they were obtained using several approximations: Bloch equations,
axially symmetric A and g tensors,
small modulation amplitude compared with the homogeneous line width,
and the adiabatic approximation for the spin Hamiltonian. Therefore,
the Δθ values could be estimated adequately from the A components, while the f (or τR–1) values are correct within 1 order of magnitude,
depending on the Δθ value.Thus, the comparison
of the conventional ESR and STESR spectra
enables the selection of the spin probe rotational motion in the CB[7]
complexes between two possible models and also the estimation of the
angular amplitudes of the librations.We attribute the obtained
libration amplitudes and their temperature
dependencies presented in Figure to the motions of the spin probes within the host
cavities rather than to the librations of the complexes as a whole
in the CB[7] matrix on the following grounds. First, the above temperature
dependencies appreciably differ from the data on the angular restricted
molecular motions for the doped molecular probes in different disordered
media, including supercooled liquids and organic glasses.[44−49] The common characteristic feature of the motions in all of these
systems is the existence of a temperature region, in which the linear
temperature dependency of the mean-squared libration amplitude considerably
increases in sharpness and increases nonlinearly with the temperature.
Similar phenomena concerning the translational local motion were observed
for the neutron scattering on the protons, for Mossbauer absorption
of the dissolved iron ions, and for the motions in proteins and lipid
membranes.[50−53] These general phenomena were treated as dynamical transitions from
harmonic librations at low temperatures to anharmonic librations for
diffusive motions. Some experimental results indicate that the dynamical
transitions in molecular glasses and biological systems involve cooperative
motion in a cluster of neighboring molecules (see ref (49)).Our ESR data for
quite different objects, including the spin probes
in the guest–host complexes with the CB[7] host, which form
a dilute solid solution in the CB[7] matrix, are also indicative of
the rotational motion of limited angular amplitude, which increases
with temperature. For better comparison of both kinds of dependencies,
we expressed the angular amplitudes in Figure in radians and plotted the temperature dependencies
for the mean-squared amplitudes in Figure , as was carried out in previous studies.
Figure 8
Temperature
dependencies of the mean-squared libration amplitudes
for spin probes I–III inside the
CB[7] cavities embedded into the solid CB[7] matrix.
Temperature
dependencies of the mean-squared libration amplitudes
for spin probes I–III inside the
CB[7] cavities embedded into the solid CB[7] matrix.As seen in Figure , the mean-squared libration amplitudes for I have a
parabolic temperature dependence on the broad temperature range without
a visible sharp transition and tend to be linear at relatively high
temperatures. A similar dependency without a sharp transition is observed
for the II@CB[7] complex. The temperature dependence
for the III@CB[7] complex was measured in a minor temperature
range due to the partial dissociation of the spin probe out of the
CB[7] cavity at elevated temperatures (see SI4). However, in this range, a sharp increase in the libration amplitude
was also not observed.Second, the libration amplitudes are
different for spin probes I–III and
have different temperature dependencies,
whereas the mechanism of the overall rotation predicts approximately
equal temperature dependencies for all of the complexes. Furthermore,
the libration amplitudes for the different spin probes correlate with
the probe dimensions, i.e., they are the greatest for probe I having the minimum size and are minimal for probe III having the maximum size. Next, the temperature dependencies
in Figure differ
from the similar dependencies for the amorphous solids discussed above,
which have a rather long linear region and sharp transition to nonlinear
behavior. Moreover, it was shown that the molecules embedded into
the solid matrix execute librations of considerably smaller amplitude
if they are structurally similar to the matrix molecules compared
to the case with other probes.[49] This means
that for the guest–host complexes embedded into the matrix
of the host molecules, the librations of the spin probes in the host
cavities are predominantly manifested in the ESR spectra rather than
the librations of the guest–host complexes as a whole. Finally,
the librations of the spin probes within the CB[7] cavities in the
dilute solutions are certainly not cooperative as opposed to the case
of molecular glasses.[49]As noted
in Section , there
are only a few studies on the rotational mobility of the
spin probes in the g/h complexes with cucurbiturils.[22,23] In the previous work,[7]uril Complex. Toward
Paramagnetic Gyroscopes and Rolling Machines. Nanoscale. 2015 ">22] bis-spiropiperidinium
nitroxide derived from Tempone was included in CB[7] to form a strong
g/h complex having increased resistance to ascorbate reduction. The
unusual ESR line shape of this complex was explained by an anisotropic
rotational diffusion, which was more rapid than the Brownian rotational
diffusion of the free spin probe in water, i.e., in this complex,
a very high mobility of the spin probe is realized inside the CB[7]
cavity. Surprisingly, such superhigh mobility is possible for the
spin probe having two positive charges on the opposite sides of the
molecule, which are capable of interacting with the carbonyl oxygen
groups on the walls of CB[7]. The comparison of the work of Casano
et al.[7]uril Complex. Toward
Paramagnetic Gyroscopes and Rolling Machines. Nanoscale. 2015 ">22] with the results from ref (23) and from the present study,
where, on the contrary, rather constrained motions were discovered,
shows that there is a great potential in researching and applying
such different dynamics in different chemical and physical processes
occurring in nanosystems.
3.3. Computational Results and Their Comparison
with Experimental
Data
The hydrophobic environment for the CB[7] complexes
in the solid [CB7] matrix means low dielectric permittivity of the
local environment, which is close to the permittivity of a gas. This
fact allows us to suppose that, because of the absence of molecular
motion in the solid matrix, the effect of the surrounding results
mainly in the immobilization of the embedded inclusion complex and
formation of the hydrophobic environment. This conclusion in turn
allows us to assume that the inner structural features of the CB[7]
inclusion complexes embedded in the solid CB7 matrix in a first approximation
might be computed by the DFT method, which is technically applicable
to the gas phase.The formation energies for the complexes of I–III with CB[7] and their structures
are given in Table and Figures –11. The influence of the aqueous environment on the
formation energy and the spatial structure of the g/h complexes with
CB[7] are considered in more detail in SI3.
Table 4
Complex Formation Energies, ΔEcomp.form, and the Contributions to ΔEcomp.form from Electrostatic (ΔEel.stat) and Van der Waals (ΔEvdW) Interactions (kcal/mol) for the CB[7] Inclusion Complexes
with Spin Probes I–III in the Hydrophobic
and Aqueous Environments
complexes and molecules
ΔEcomp.form
ΔEvdW
ΔEel.stat.
I@CB7perpa
–94.0
–39.3
–54.7
I@CB7para
–83.0
–36.7
–46.3
I@[36H2O]
–70.9/–70.2b
–23.2
–47.7
II@CB7-NO-inc
–91.3
–43.4
–47.9
II@CB7-NO-outd
–90.6
–24.5
–66.1
II@[30H2O]·CB7-inc
–89.0
–37.6
–51.4
II@[30H2O]·CB7-outd
–100.3
–30.7
–69.6
III@CB7
–55.2
–55.8
0.6
Hydration energy calculated using
the PCM approximation.
Hydration
energy, calculated by
the cluster approximation/hydration energy calculated using PCM.
NO group of II is located
inside the CB[7] cavity.
NO group of II is located
outside (out) the CB[7] cavity.
Figure 9
Structure of the complex I@CB[7] in the hydrophobic
environment computed by the DFT-D3 method. The red, dark blue, blue,
and gray indicate oxygen, nitrogen, carbon, and hydrogen atoms, respectively.
Figure 11
Structure of the III@CB[7] inclusion complex in the
CB[7] matrix.
Structure of the complex I@CB[7] in the hydrophobic
environment computed by the DFT-D3 method. The red, dark blue, blue,
and gray indicate oxygen, nitrogen, carbon, and hydrogen atoms, respectively.Hydration energy calculated using
the PCM approximation.Hydration
energy, calculated by
the cluster approximation/hydration energy calculated using PCM.NO group of II is located
inside the CB[7] cavity.NO group of II is located
outside (out) the CB[7] cavity.We emphasize that the complex formation energies in the solid CB[7]
matrix presented in the upper rows of Table relate to the gas-phase formation energies.
Moreover, these energies should not be directly related to the corresponding
binding constants of the spin probes because our DFT computations
did not consider the entropic component of the free energy of formation.It is seen that in the I@CB7 complex there are contributions
from both electrostatic and van der Waals interactions. The designations I@CB7perp and I@CB7par relate to the complexes
with the orientations of the NO group almost perpendicular or parallel
relative to the portal CB[7]plane, respectively. It is seen that in
the hydrophobic environment the complex structure with the perpendicular
orientation of the NO group is more stable because of greater contributions
of both electrostatic and van der Waals interactions. The spatial
structure of the latter I@CB7 complex is given in Figure . I is
almost entirely embedded into the CB[7] cavity, and the NO group is
located close to the portal inside the cavity.The rigorous
computation of the complex formation energy and the
spatial structure of the I@CB[7] complex in an aqueous
solution is a complicated problem within the framework of the DFT
method. According to the present concept, the main driving force for
the guest–host complex formation with the cucurbiturils in
an aqueous solution is the hydrophobic interaction.[3] This interaction results in the transition of the guest
molecule from an aqueous solution to the host cavity and the displacement
of the “high-energy” water from the cavity to the solvent
bulk. The complex formation in the aqueous phase can be formally divided
into the following stages: (i) dehydration of the spin probe, (ii)
release of high-energy water from CB[7] and its merger with bulk water,
and (iii) the inclusion of the spin probe into the CB[7] cavity.We applied an approximate approach based on the building up of
a solvation shell (cluster) around the solute consisting of a large
number of water molecules.[54] The DFT-D3
method was used for computing the interaction energy of the cluster
with the solute (I), which is the hydration energy (Ehydr) of the solute. Earlier, a similar approach
was successfully applied to simulate the solvent influence on the
ground and excited states of the various organic solutes: guanine,[55] thymine,[56] and pyrene.[57−59] The first hydration layer can be built as a closed cluster enveloping
the solute with all of the H-bonded water molecules. Further, the
water layers can be sequentially added until the new layer does not
lead to a change in Ehydr. The computation
details and spatial structures of hydrated I, the CB[7]
molecule, and the hydrated I@CB[7] complex are presented
in SI3.The examination of the I@CB[7] complex in an aqueous
solution shows that there are three possible (basic) variants of the
complex structures for further consideration. In two of them, the
NO group is located inside the CB7 with different orientations of
the NO bond relative to the portal, i.e., perpendicular and parallel
ones, and the third one represents the so-called exo-complex in which I is bound to CB7 through the positively charged ammonium
group, while the other part of I is in the aqueous phase
out of the CB7 cavity. The experimental data on the polarity of the
NO group environment, psolut, and the
NO group accessibility to Crox, ΔHcomex/ΔHfreeex, allow us to reject straightaway the third variant of the complex
for which the NO group is open for bulk water and therefore both parameters
should be equal to unity. In fact, both the decreased polarity and
accessibility parameters correspond to the NO group not easily accessible
to water, i.e., located in the cavity (see Sections . and 3.1.3).The formation energy of the I@CB7 complex for
the
more stable structure with the perpendicular orientation of the NO
bond relative to the portal was found to be −18.6 kcal/mol.
Accounting for the free energy changes attributed to an increase in
the entropy, owing to the transition of the high-energy water molecules
into the bulk water, would afford even more negative values.[60,61] Thus, the inclusion of water into the energy balance in the complex
formation predicts the formation of the I@CB[7] complex
in agreement with the experiment.The DFT-D3 version of the
DFT method was also used to compute the
structure of the II@CB7 complex in the solid CB7 matrix.
The complex formation energies for the locations of the NO group inside
and outside the CB7 cavity are given in Table , while the corresponding II@CB[7] spatial structures are shown in Figure . As seen in Table , the “in” structure with the
NO group inside CB7 is slightly more stable than the “out”
structure because of a larger contribution of the vdW interaction
in the former one.
Figure 10
DFT-D3-computed structures of the inclusion complex, II@CB7, in the hydrophobic environment. The NO group is located
(a)
inside or (b) outside the CB[7] cavity.
DFT-D3-computed structures of the inclusion complex, II@CB7, in the hydrophobic environment. The NO group is located
(a)
inside or (b) outside the CB[7] cavity.First, in Table ,
as for I@CB7, the vdW contribution to the complexation
energy of II@CB[7] is quite comparable to the electrostatic
one.Figure shows
two possible structures of II@CB[7], which could simulate
the spatial structure of this complex in the hydrophobic environment,
i.e., in the CB[7] matrix. In II@CB[7]-NO-in, the NO
bond is oriented approximately parallel to the symmetry axis, C7,
of CB[7] and located close to the portal inside the CB[7] cavity.
This structure is energetically more favorable by 0.7 kcal/mol than
the II@CB7-NO-out structure, in which the NO group is
located outside the CB[7] cavity. The location of the NO group out
of the cavity is also at variance with the slow-motional ESR spectra
of this complex in the CB[7] matrix because, as shown in SI4, the ESR spectra of the spin probes with
the NO group in the hydrophobic CB[7] matrix correspond to the rapid
molecular rotation. Therefore, the structure of II@CB7-NO-out
should be rejected, whereas the structure of II@CB[7]-NO-in
is realized in the hydrophobic environment of the complex in the CB[7]
matrix.The effect of the water environment on the structure
of the II@CB[7] complex was simulated in a way different
from that
for the I@CB[7] complex. As already mentioned, the complex
of CB[7] with the spin probe, Cat1, which differs from II by having a methyl instead of an octyl group in II,
was concluded in ref (16) to have different spatial structures in crystal and aqueous solutions.
Specifically, both in the gas and crystal, Cat1 is entirely located
in the CB[7] cavity. In the aqueous solution, the trimethylammonium
group in Cat1 is bound to the CB[7] portal from the outside, while
the NO group and the rest of the Cat1 molecule are exposed to water.The bulky octyl group in II changes the hydrophobic/electrostatic
balance of this spin probe, which might affect the mode of its binding
to CB[7] compared to the case with Cat1. Our experimental data on
the environment polarity and accessibility of the NO group to Crox
(Tables and 2) demonstrate the almost aqueous environment of
the NO group. However, these data are not sufficient to deduce the
exact location of the whole radical of II and estimate
the complex formation energy. Therefore, it appeared important to
simulate the complex formation energy and structure of the II@CB7 complex in an aqueous solution using molecular dynamics simulations.
The great quality of this method is the capability to determine the
global minimum of the potential energy and free energy corresponding
to the equilibrium structure of the supramolecular complexes. The
stability of g/h complexes is determined by the dependence of the
energy of a complex on a small number of variables responsible for
complexation. In most cases, this variable can be considered the distance R between the centers of mass of the components. In the
MD method, to determine the global minimum of potential energy, a
mean force potential (PMF) is constructed, which is obtained as a
result of averaging and is affected not only by the intermolecular
interactions of the components but also by the presence of an aqueous
solvent.[62,63]The most stable structure in the aqueous
phase is shown to correspond
to the location of the NO group in the aqueous phase out of the CB[7]
cavity. The outside location of the NO group of II in
an aqueous solution agrees well with the experimental data on the
environment polarity and accessibility to the Crox of the NO group
(see Tables and 2). It is also shown that the octyl group of II takes the bent form of a helix with a maximum inclusion
into the cavity. Such a change in conformation compared with the all-trans
conformation in the hydrophobic environment or vacuum (see Figure ) is due to the
hydrophobic interaction. The results of the application of this method
to the g/h complexes of II and III with
CB7 in the aqueous phase are presented in more detail in SI3.The DFT computation of the spatial
structure of III@CB7 in the CB[7] matrix showed that
the indole ring of III is oriented perpendicular to the
portal plane, as shown in Figure , while the inclination of
the N–O bond to the vertical
CB7 axis is about 47°. The NO group itself is at a rather close
proximity to the portal plane. Interestingly, however, that this location
corresponds to the considerably hydrophobic environment of the NO
group, as seen from the psolid value (Table ).Structure of the III@CB[7] inclusion complex in the
CB[7] matrix.Along with the computations of
the spatial structures of the g/h
complexes, we determined, by DFT, some important physical parameters
of the spin probes and CB[7] and the effect of the complexation on
their changes:(1) The total electric charges on the spin probes,
partial electric
charges on N and O atoms, and the spin densities on the N and O atoms
of the NO group for the free spin probes and their complexes with
CB[7] in the solid CB[7] matrix are presented in SI5.(2) The principal values of the mass moments of
inertia and ratios
of the long (d1) and short (d2) ellipse diameters of the portals arising from the complex
formation are given in SI6.
Conclusions
The evidence was obtained for the librational
character of the
rotational motion of the spin probes in the guest–host complexes
inside the CB7 cavities that were embedded in the solid CB7 matrix.
This motion is opposed to the diffusional rotation over the whole
solid angle. The stated conclusion is based on the comparison of the
results obtained by conventional ESR with those of the STESR methods
for the above motion models.The determined libration amplitudes
and their temperature dependencies
relate to the motions of spin probes I–III within the host cavities rather than to the motions of the complexes
as a whole in the solid CB[7] matrix. These librations essentially
differ from the constrained motions observed for various molecular
probes in supercooled liquids, organic molecular glasses, and other
disordered media. As opposed to these objects, the temperature dependencies
of the libration amplitudes in the g/h complexes have a parabolic
shape and turn into linear dependencies at relatively high temperatures.The integrated experimental ESR- and DFT-based computational approaches
were used to characterize the structure of the complexes, particularly,
to trace the location of guest molecules in the host structure. For
the I@CB7 complex, the observed aN and psolut values as well as
dynamic accessibility parameters correspond to the NO group location
deduced from the DFT structure. A certain correlation also exists
for the II@CB7 and III@CB7 complexes. ESR
data on polarity and dynamic accessibility in aqueous solutions are
indicative of the NO group location in the aqueous phase, in agreement
with DFT computations that take into account aqueous clusters around
the complex. In the CB7 matrix, the Azz and psolid values correspond to the
location of the NO group in the nonpolar environment. This again agrees
with the computed structures in which the guest molecules and their
NO groups are inside the CB7 cavity.The environment polarities
of the NO groups for all of the spin
probes in the inclusion complexes are substantially different for
the complexes in an aqueous solution and in the solid CB[7] matrix.
For I@CB[7] in an aqueous solution, the polarity is probably
due to the partial penetration of the outside water molecules; for II@CB[7], to the location of the NO group in the aqueous phase;
and for III@CB[7], to the location of the NO group at
the water/CB[7] interface.The hydrophobic environment for the
guest–host complexes
in the solid CB[7] matrix and, accordingly, low dielectric constant
in the first approximation make the DFT computations compatible, which
are technically applicable to the gas phase.The use of the
concept of aqueous clusters surrounding the spin
probes and CB[7] molecules has allowed the estimation of the effects
of an aqueous environment on the complexation energy and spatial structure
of the guest–host complexes.The use of the molecular
dynamics simulations has allowed the determination
of global minima and binding energies for the II@CB7
and III@CB7 complexes in the aqueous solutions.The spatial structures, formation energies of the complexes, and
the changes in the atomic charge and spin density distributions on
the complex formation are determined from the computations.
Authors: Woo Sung Jeon; Albina Y Ziganshina; Jae Wook Lee; Young Ho Ko; Jin-Koo Kang; Chongmok Lee; Kimoon Kim Journal: Angew Chem Int Ed Engl Date: 2003-09-05 Impact factor: 15.336