Literature DB >> 22881280

Release of high-energy water as an essential driving force for the high-affinity binding of cucurbit[n]urils.

Frank Biedermann1, Vanya D Uzunova, Oren A Scherman, Werner M Nau, Alfonso De Simone.   

Abstract

Molecular dynamics simulations and isothermal titration calorimetry (ITC) experiments with neutral guests illustrate that the release of high-energy water from the cavity of cucurbit[n]uril (CBn) macrocycles is a major determinant for guest binding in aqueous solutions. The energy of the individual encapsulated water molecules decreases with increasing cavity size, because larger cavities allow for the formation of more stable H-bonded networks. Conversely, the total energy of internal water increases with the cavity size because the absolute number of water molecules increases. For CB7, which has emerged as an ultrahigh affinity binder, these counteracting effects result in a maximum energy gain through a complete removal of water molecules from the cavity. A new design criterion for aqueous synthetic receptors has therefore emerged, which is the optimization of the size of cavities and binding pockets with respect to the energy and number of residing water molecules.

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Year:  2012        PMID: 22881280     DOI: 10.1021/ja303309e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  83 in total

1.  Acyclic Cucurbit[n]uril-Type Molecular Container Enables Systemic Delivery of Effective Doses of Albendazole for Treatment of SK-OV-3 Xenograft Tumors.

Authors:  Gaya Hettiarachchi; Soumen K Samanta; Shane Falcinelli; Ben Zhang; Damien Moncelet; Lyle Isaacs; Volker Briken
Journal:  Mol Pharm       Date:  2016-01-22       Impact factor: 4.939

2.  Acyclic Cucurbit[n]uril-Type Receptors: Optimization of Electrostatic Interactions for Dicationic Guests.

Authors:  Xiaoyong Lu; Sandra A Zebaze Ndendjio; Peter Y Zavalij; Lyle Isaacs
Journal:  Org Lett       Date:  2020-06-10       Impact factor: 6.005

3.  Carbohydrate recognition by RpfB from Mycobacterium tuberculosis unveiled by crystallographic and molecular dynamics analyses.

Authors:  Flavia Squeglia; Maria Romano; Alessia Ruggiero; Luigi Vitagliano; Alfonso De Simone; Rita Berisio
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

4.  Synthesis of a Disulfonated Derivative of Cucurbit[7]uril and Investigations of its Ability to Solubilize Insoluble Drugs.

Authors:  Elizabeth L Robinson; Peter Y Zavalij; Lyle Isaacs
Journal:  Supramol Chem       Date:  2015-05-01       Impact factor: 1.688

5.  Chemistry inside molecular containers in the gas phase.

Authors:  Tung-Chun Lee; Elina Kalenius; Alexandra I Lazar; Khaleel I Assaf; Nikolai Kuhnert; Christian H Grün; Janne Jänis; Oren A Scherman; Werner M Nau
Journal:  Nat Chem       Date:  2013-04-07       Impact factor: 24.427

6.  Glycoluril-Derived Molecular Clips are Potent and Selective Receptors for Cationic Dyes in Water.

Authors:  Nengfang She; Damien Moncelet; Laura Gilberg; Xiaoyong Lu; Vladimir Sindelar; Volker Briken; Lyle Isaacs
Journal:  Chemistry       Date:  2016-08-05       Impact factor: 5.236

7.  Host-guest chemistry in the gas phase: complex formation of cucurbit[6]uril with proton-bound water dimer.

Authors:  Dong Hun Noh; Shin Jung C Lee; Jong Wha Lee; Hugh I Kim
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-17       Impact factor: 3.109

8.  Cationic acyclic cucurbit[n]uril-type containers: synthesis and molecular recognition toward nucleotides.

Authors:  David Sigwalt; Peter Y Zavalij; Lyle Isaacs
Journal:  Supramol Chem       Date:  2016-04-13       Impact factor: 1.688

9.  Parameterization of an effective potential for protein-ligand binding from host-guest affinity data.

Authors:  Lauren Wickstrom; Nanjie Deng; Peng He; Ahmet Mentes; Crystal Nguyen; Michael K Gilson; Tom Kurtzman; Emilio Gallicchio; Ronald M Levy
Journal:  J Mol Recognit       Date:  2015-08-10       Impact factor: 2.137

10.  Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks.

Authors:  Hui Zhao; Soumyo Sen; T Udayabhaskararao; Michał Sawczyk; Kristina Kučanda; Debasish Manna; Pintu K Kundu; Ji-Woong Lee; Petr Král; Rafal Klajn
Journal:  Nat Nanotechnol       Date:  2015-11-23       Impact factor: 39.213

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