| Literature DB >> 32526931 |
Ibon Alkorta1, Arnaldo F Silva2,3, Paul L A Popelier2,3.
Abstract
Energy profiles of seven halogen-bonded complexes were analysed with the topological energy partitioning called Interacting Quantum Atoms (IQA) at MP4(SDQ)/6-31+G(2d,2p) level of theory. Explicit interatomic electron correlation energies are included in the analysis. Four complexes combine X2 (X = Cl or F) with HCN or NH3, while the remaining three combine ClF with HCN, NH3 or N2. Each complex was systematically deformed by translating the constituent molecules along its central axis linking X and N, and reoptimising its remaining geometry. The Relative Energy Gradient (REG) method (Theor. Chem. Acc. 2017, 136, 86) then computes which IQA energies most correlate with the total energy during the process of complex formation and further compression beyond the respective equilibrium geometries. It turns out that the covalent energy (i.e., exchange) of the halogen bond, X…N, itself drives the complex formation. When the complexes are compressed from their equilibrium to shorter X…N distance then the intra-atomic energy of N is in charge. When the REG analysis is restricted to electron correlation then the interatomic correlation energy between X and N again drives the complex formation, and the complex compression is best described by the destabilisation of the through-space correlation energy between N and the "outer" halogen.Entities:
Keywords: Interacting Quantum Atoms (IQA); Møller-Plesset (MP); Quantum Chemical Topology (QCT); Relative Energy Gradient (REG); covalency; electron correlation; halogen bonding
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Year: 2020 PMID: 32526931 PMCID: PMC7321288 DOI: 10.3390/molecules25112674
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Experimental and calculated intermolecular distances (Å) and calculated binding energies (kJ mol−1).
| Complex | N⋯X Dist. Exp. | N⋯X Dist. Calc. | Binding Energy |
|---|---|---|---|
| HCN:F2 | 2.803 [ | 2.794 | −5.5 |
| H3N:F2 | 2.708 [ | 2.684 | −8.5 |
| HCN:Cl2 | 2.915 [ | 2.982 | −9.6 |
| H3N:Cl2 | 2.724 [ | 2.748 | −17.7 |
| N2:ClF | 2.920 [ | 2.969 | −6.9 |
| HCN:ClF | 2.639 [ | 2.684 | −18.8 |
| H3N:ClF | 2.376 [ | 2.359 | −39.6 |
Figure 1Molecular graphs of all seven complexes studied. The complex HCN:F2 has been marked to illustrate the labelling throughout the paper. The location of each BCP is marked by a small green sphere.
Intermolecular BCP properties (all in a.u. except the distance).
| N··X Distance (Å) | ρBCP | ∇2ρBCP | HBCP | |
|---|---|---|---|---|
| HCN:F2 | 2.794 | 0.008 | 0.039 | 0.002 |
| H3N:F2 | 2.684 | 0.013 | 0.053 | 0.002 |
| HCN:Cl2 | 2.983 | 0.010 | 0.044 | 0.002 |
| H3N:Cl2 | 2.748 | 0.021 | 0.070 | 0.002 |
| N2:ClF | 2.969 | 0.009 | 0.042 | 0.002 |
| HCN:ClF | 2.684 | 0.019 | 0.079 | 0.002 |
| H3N:ClF | 2.359 | 0.047 | 0.137 | −0.003 |
REG analysis of the total atomic energies (Level 1). For each complex, two atoms are listed, that with the most positive and that with the most negative REG value (dimensionless, see Equation (8)). The REG values are shown in parentheses. The atomic labeling follows Xouter–Xinner ⋯ N3- etc. where X = Cl or F, and the numeric labels of atoms not marked in this core common scheme increase while moving away from Xinner.
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| Finner | Finner | Clinner | Clinner | N4 | C4 | H * |
| (2.94) | (3.54) | (2.95) | (2.56) | (1.55) | (2.33) | (1.35) |
| Fouter | Fouter | Clouter | Clouter | Fouter | Fouter | Clinner |
| (−3.08) | (−3.72) | (−3.40) | (−4.49) | (−1.64) | (−1.27) | (−1.70) |
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| Fouter | Fouter | Clouter | Clouter | N3 | N3 | N3 |
| (3.60) | (4.00) | (3.55) | (3.49) | (1.50) | (2.29) | (1.38) |
| Finner | Finner | Clinner | Clinner | N4 | C4 | H * |
| (−3.34) | (−3.74) | (−2.78) | (−2.51) | (−2.42) | (−2.38) | (−0.84) |
* Contribution of any of the three symmetry-equivalent H atoms.
Figure 2Energy profiles (total system, total atomic Clouter and total atomic Clinner) of H3N:Cl2 as a function of the distance between the “inner contact atoms” Clinner and N3. The three energies all refer to the corresponding energies at equilibrium, referring to the respective energy scales (left = total system, right = atomic energies).
REG analysis of the total interatomic, , and intra-atomic energies, (Level 2). For each complex, the largest two energies are listed (most positive and most negative REG value by absolute value except if smaller than 2.0). The REG values are shown in parentheses. The atomic labeling follows X1–X2 ⋯ N3- etc. where X = Cl or F, and the numeric labels of atoms not marked in this core common scheme increase while moving away from Xinner.
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| Intra_n3 | Intra_n3 | Intra_cl2 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 |
| (6.36) | (6.65) | (6.50) | (7.78) | (5.56) | (7.81) | (7.15) |
| Intra_f2 | Intra_f2 | Intra_n3 | Intra_cl2 | Intra_cl2 | Inter_cl2_c4 | Inter_f1_cl2 |
| (6.27) | (6.14) | (6.35) | (6.30) | (4.59) | (4.01) | (4.09) |
| Intra_f1 | Intra_f1 | Inter_n3_c4 | Intra_cl1 | Inter_n3_c4 | Intra_f1 | |
| (−3.39) | (−5.04) | (−2.58) | (−4.97) | (−3.25) | (−2.17) | |
| Inter_f2_n3 | Inter_f2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 |
| (−9.22) | (−10.34) | (−11.35) | (−13.74) | (−8.71) | (−12.71) | (−12.11) |
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| Inter_f2_n3 | Inter_f2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 | Inter_cl2_n3 |
| (6.47) | (7.46) | (11.87) | (10.54) | (9.93) | (13.03) | (9.80) |
| Intra_f1 | Intra_f1 | Inter_n3_c4 | Intra_cl1 | Inter_n3_c4 | ||
| (3.48) | (4.17) | (4.34) | (3.58) | (4.35) | ||
| Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Inter_f1_n3 |
| (−2.62) | (−3.25) | (−5.72) | (−4.91) | (−2.82) | (−4.89) | (−2.04) |
| Intra_f2 | Intra_f2 | Intra_cl2 | Intra_cl2 | Intra_cl2 | Inter_cl2_c4 | Intra_n3 |
| (−5.93) | (−6.55) | (−6.60) | (−5.95) | (−4.86) | (−5.81) | (−4.41) |
Figure 3Energy profiles (total, intra-atomic energy of N3, and interatomic Clinner–N3) of H3N:ClF as a function of the distance between the “inner contact atoms” Clinner and N3.
REG analysis (level 3) of the total intra-atomic energy, , and inter-atomic energies, by all types: electrostatic (Vcl), exchange (Vx) and correlation (Vc). For each complex, the largest two energies are listed (most positive and most negative REG value by absolute value except if smaller than 2.0). The REG values are shown in parentheses. The atomic labeling follows X1–X2 ⋯ N3- etc. where X = Cl or F, and the numeric labels of atoms not marked in this core common scheme increase while moving away from X2 (Xinner).
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| Intra_n3 | Vx_f1_f2 | Intra_cl2 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 |
| (6.36) | (6.80) | (6.50) | (7.78) | (5.56) | (7.81) | (7.15) |
| Intra_f2 | Intra_n3 | Intra_n3 | Intra_cl2 | Intra_cl2 | Vcl_cl2_c4 | Vx_f1_cl2 |
| (6.27) | (6.65) | (6.35) | (6.30) | (4.59) | (4.22) | (4.43) |
| Intra_f1 | Intra_f1 | Vcl_cl2_n3 | Vcl_cl2_n3 | Vcl_f1_cl2 | Vcl_cl2_n3 | Vcl_cl2_n3 |
| (−3.39) | (−5.04) | (−4.91) | (−5.52) | (−2.44) | (−5.07) | (−3.61) |
| Vx_f2_n3 | Vx_f2_n3 | Vx_cl2_n3 | Vx_cl2_n3 | Vx_cl2_n3 | Vx_cl2_n3 | Vx_cl2_n3 |
| (−7.20) | (−8.06) | (−6.43) | (−8.22) | (−7.61) | (−7.64) | (−8.50) |
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| Vx_f2_n3 | Vx_f2_n3 | Vx_cl2_n3 | Vx_cl2_n3 | Vx_cl2_n3 | Vcl_cl2_n3 | Vx_cl2_n3 |
| (4.81) | (5.65) | (6.07) | (5.80) | (6.98) | (7.93) | (5.33) |
| Intra_f1 | Intra_f1 | Vcl_cl2_n3 | Vcl_cl2_n3 | Vcl_cl2_n3 | Vcl_n3_c4 a | Vcl_cl2_n3 |
| (3.48) | (4.17) | (5.80) | (4.74) | (2.92) | (5.50) | (4.47) |
| Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Intra_n3 | Vx_f1_cl2 |
| (−2.62) | (−3.25) | (−5.72) | (−4.91) | (−2.82) | (−4.89) | (−2.49) |
| Intra_f2 | Intra_f2 | Intra_cl2 | Intra_cl2 | Intra_cl2 | Vcl_cl2_c4 | Intra_n3 |
| (−5.93) | (−6.55) | (−6.60) | (−5.95) | (−4.86) | (−5.93) | (−4.41) |
a The 3rd most positive REG value is Vx_cl2_n3, with value of 5.10 (while the 4th one has the much smaller value of 3.38, see Table S4). Note that Vx_cl2_n3 is in line with the expected Vx (Xinner–Ninner).
Figure 4Energy profiles (total, intra-atomic energy of Clinner, and interatomic exchange Vx(Clinner–N3)) of HCN:Cl2 as a function of the distance between the “inner contact atoms” Clinner and N3.
REG analysis of the correlation (Vc) terms only, both intra- and interatomic. For each complex, the largest two energies are listed (most positive and most negative REG value by absolute value). The REG values are shown in parentheses. The atomic labeling follows X1–X2 ···N3− etc. where X = Cl or F, and the numeric labels of atoms not marked in this core common scheme increase while moving away from Xinner.
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| Vc_f1_n3 | Vc_f1_n3 | Vc_cl1_n3 | Vc_cl1_n3 | Vc_f1_n3 | Vc_f1_n3 | Vc_cl2_n3 |
| (0.18) | (0.21) | (0.11) | (0.13) | (0.12) | (0.09) | (0.07) |
| Vc_f1_n3 | ||||||
| (0.07) | ||||||
| Vc_f2_n3 | Vc_cl2_n3 | Vc_cl2_h4 | ||||
| (−0.43) | (−0.25) | (−0.04) | ||||
| Vc_f2_n3 | Vc_f1_f2 | Vc_cl2_n3 | Vc_cl1_cl2 | Vc_cl2_n3 | Vc_cl2_n3 | Vc_f1_cl2 |
| (−0.75) | (−0.43) | (−0.41) | (−0.33) | (−0.69) | (−0.40) | (−0.33) |
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| Vc_f2_n3 | Vc_f2_n3 | Vc_cl2_n3 | Vc_cl2_n3 | Vc_cl2_n3 | Vc_cl2_n3 | Vc_cl2_n3 |
| (0.89) | (0.60) | (0.88) | (0.45) | (1.05) | (0.57) | (0.24) |
| Vc_f1_n3 | ||||||
| (−0.22) | ||||||
| Vc_f1_n3 | Vc_f1_n3 | Vc_cl1_n3 | Vc_cl1_n3 | Vc_n3_n4 | Vc_f1_n3 | Vc_f1_n3 |
| (−0.27) | (−0.18) | (−0.17) | (−0.10) | (−0.29) | (−0.10) | (−0.07) |