Literature DB >> 26804126

Extension of the interacting quantum atoms (IQA) approach to B3LYP level density functional theory (DFT).

Peter Maxwell1, Ángel Martín Pendás2, Paul L A Popelier1.   

Abstract

An interaction between two atoms, bonded or non-bonded, consists of interatomic contributions: electrostatic energy, exchange energy and electronic correlation energy. Together with the intra-atomic energy of an atom, these contributions are the basic components of the Interacting Quantum Atom (IQA) energy decomposition scheme. Here, we investigate IQA's proper use in conjunction with an explicit implementation of the B3LYP functional. The recovery of the total molecular energy from the IQA components is emphasised, for the first time. A systematic study of three model systems of biological relevance, N-methylacetamide (NMA), the doubly capped tripeptide GlyGlyGly and an alloxan dimer, shows the stabilization effect of B3LYP on most of the interatomic exchange energies (V) compared to their Hartree-Fock values. Diagrams of exchange energies versus interatomic distance show the clustering of interactions, one cluster for each 1,n (n = 1 to 6 where the atoms are separated by n - 1 bonds). The positioning of some V values outside their expected cluster marks interesting interactions.

Entities:  

Year:  2016        PMID: 26804126     DOI: 10.1039/c5cp07021j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  20 in total

1.  Theoretical investigations on forward-backward ESIPT processes of three fluorophores deriving from 2-(2'-hydroxyphenyl)thiazole.

Authors:  Xiuning Liang; Hua Fang
Journal:  Photochem Photobiol Sci       Date:  2021-03-31       Impact factor: 3.982

2.  A theoretical study of the diastereoselective allylation of aldehydes with new chiral allylsilanes.

Authors:  Vincent Tognetti; Samir Bouzbouz; Laurent Joubert
Journal:  J Mol Model       Date:  2016-12-09       Impact factor: 1.810

3.  A density functional theory study of the decomposition mechanism of nitroglycerin.

Authors:  Liguan Pei; Kehai Dong; Yanhui Tang; Bo Zhang; Chang Yu; Wenzuo Li
Journal:  J Mol Model       Date:  2017-08-21       Impact factor: 1.810

4.  Non-covalent interactions from a Quantum Chemical Topology perspective.

Authors:  Paul L A Popelier
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

5.  Geometry Optimization with Machine Trained Topological Atoms.

Authors:  François Zielinski; Peter I Maxwell; Timothy L Fletcher; Stuart J Davie; Nicodemo Di Pasquale; Salvatore Cardamone; Matthew J L Mills; Paul L A Popelier
Journal:  Sci Rep       Date:  2017-10-09       Impact factor: 4.379

6.  Unfavorable regions in the ramachandran plot: Is it really steric hindrance? The interacting quantum atoms perspective.

Authors:  Peter I Maxwell; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-08-25       Impact factor: 3.376

7.  An interacting quantum atom study of model SN 2 reactions (X- ···CH3 X, X = F, Cl, Br, and I).

Authors:  Ibon Alkorta; Joseph C R Thacker; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-11-10       Impact factor: 3.376

8.  An Interacting Quantum Atoms (IQA) and Relative Energy Gradient (REG) Study of the Halogen Bond with Explicit Analysis of Electron Correlation.

Authors:  Ibon Alkorta; Arnaldo F Silva; Paul L A Popelier
Journal:  Molecules       Date:  2020-06-09       Impact factor: 4.411

9.  Using the Relative Energy Gradient Method with Interacting Quantum Atoms to Determine the Reaction Mechanism and Catalytic Effects in the Peptide Hydrolysis in HIV-1 Protease.

Authors:  Joseph C R Thacker; Mark A Vincent; Paul L A Popelier
Journal:  Chemistry       Date:  2018-07-03       Impact factor: 5.236

10.  Probing inhibition mechanisms of adenosine deaminase by using molecular dynamics simulations.

Authors:  Xiaopian Tian; Ye Liu; Jingxuan Zhu; Zhengfei Yu; Jiarui Han; Yan Wang; Weiwei Han
Journal:  PLoS One       Date:  2018-11-16       Impact factor: 3.240

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