Literature DB >> 32525318

Phase Transition in a Heterogeneous Membrane: Atomically Detailed Picture.

Arman Fathizadeh, Mason Valentine, Carlos R Baiz, Ron Elber.   

Abstract

Membranes serve diverse functions in biological systems. Variations in their molecular compositions impact their physical properties and lead to rich phase behavior such as switching from the gel to fluid phase and/or separation to micro- and macrodomains with different molecular compositions. We present a combined computational and experimental study of the phase behavior of a mixed membrane of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and 1,2-dilauroyl-sn-glycero-3-phosphocholine (DLPC) molecules. This heterogeneous membrane changes from gel to fluid and shows separate domains as a function of temperature. Atomically detailed simulations provide microscopic information about these molecular assemblies. However, these systems are challenging for computations since approaching equilibrium necessitates exceptionally long molecular dynamics trajectories. We use the simulation method of MDAS (Molecular Dynamics with Alchemical Steps) to generate adequate statistics. Isotope-edited IR spectroscopy of the lipids was used to benchmark the simulations. Together, simulations and experiments provide insight into the structural and dynamical features of the phase diagram.

Entities:  

Year:  2020        PMID: 32525318      PMCID: PMC7334090          DOI: 10.1021/acs.jpclett.0c01255

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  19 in total

1.  Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation.

Authors:  Jerome P Nilmeier; Gavin E Crooks; David D L Minh; John D Chodera
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

2.  Molecular simulation with variable protonation states at constant pH.

Authors:  Harry A Stern
Journal:  J Chem Phys       Date:  2007-04-28       Impact factor: 3.488

3.  Miscibility properties of binary phosphatidylcholine mixtures. A calorimetric study.

Authors:  P W van Dijck; A J Kaper; H A Oonk; J de Gier
Journal:  Biochim Biophys Acta       Date:  1977-10-03

4.  Generalized Metropolis acceptance criterion for hybrid non-equilibrium molecular dynamics-Monte Carlo simulations.

Authors:  Yunjie Chen; Benoît Roux
Journal:  J Chem Phys       Date:  2015-01-14       Impact factor: 3.488

5.  A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes.

Authors:  Arman Fathizadeh; Ron Elber
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

6.  The Ins and Outs of Lipid Flip-Flop.

Authors:  John S Allhusen; John C Conboy
Journal:  Acc Chem Res       Date:  2016-12-13       Impact factor: 22.384

Review 7.  Perspective: Computational modeling of accurate cellular membranes with molecular resolution.

Authors:  Jeffery B Klauda
Journal:  J Chem Phys       Date:  2018-12-14       Impact factor: 3.488

Review 8.  Computer simulations of lipid membrane domains.

Authors:  W F Drew Bennett; D Peter Tieleman
Journal:  Biochim Biophys Acta       Date:  2013-03-15

9.  Phase Separation in Atomistic Simulations of Model Membranes.

Authors:  Ruo-Xu Gu; Svetlana Baoukina; D Peter Tieleman
Journal:  J Am Chem Soc       Date:  2020-01-31       Impact factor: 15.419

10.  Lipid organization of the plasma membrane.

Authors:  Helgi I Ingólfsson; Manuel N Melo; Floris J van Eerden; Clément Arnarez; Cesar A Lopez; Tsjerk A Wassenaar; Xavier Periole; Alex H de Vries; D Peter Tieleman; Siewert J Marrink
Journal:  J Am Chem Soc       Date:  2014-10-01       Impact factor: 15.419

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