Literature DB >> 31964135

Phase Separation in Atomistic Simulations of Model Membranes.

Ruo-Xu Gu1, Svetlana Baoukina1, D Peter Tieleman1.   

Abstract

Understanding the lateral organization in plasma membranes remains an open problem despite a large body of research. Model membranes with coexisting micrometer-size domains are routinely employed as simplified models of plasma membranes. Many molecular dynamics simulations have investigated phase separation in model membranes at the coarse-grained level, but atomistic simulations remain computationally challenging. We simulate DPPC:DOPC and DPPC:DOPC:cholesterol lipid bilayers to investigate phase transitions at temperatures from 310 to 270 K. In this temperature range, the binary mixture forms a liquid phase (Lα) and a coexistence of Lα and either gel or ripple phases. The ternary mixture forms a liquid disordered (Ld) phase and a coexistence of liquid ordered (Lo) and either Ld or gel phases. We quantify the coexisting phases and discuss their properties against the background of experimental results. We observe partial registration of growing domains in both mixtures. We characterize specific cholesterol-cholesterol and cholesterol-phospholipid interaction geometries underlying its increased partitioning and the smoothed phase transition in the ternary mixture compared to the binary mixture. By comparing coexisting domains with homogeneous bilayers of the same composition, we demonstrate how domain coexistence affects their properties. Our simulations provide important insights into the lipid-lipid interactions in model lipid bilayers and improve our understanding of the lateral organization in plasma membranes with higher compositional complexity.

Entities:  

Year:  2020        PMID: 31964135     DOI: 10.1021/jacs.9b11057

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Phase Transition in a Heterogeneous Membrane: Atomically Detailed Picture.

Authors:  Arman Fathizadeh; Mason Valentine; Carlos R Baiz; Ron Elber
Journal:  J Phys Chem Lett       Date:  2020-06-18       Impact factor: 6.475

2.  Dual Resolution Membrane Simulations Using Virtual Sites.

Authors:  Yang Liu; Alex H De Vries; Jonathan Barnoud; Weria Pezeshkian; Josef Melcr; Siewert J Marrink
Journal:  J Phys Chem B       Date:  2020-05-01       Impact factor: 2.991

3.  Spontaneous Membrane Nanodomain Formation in the Absence or Presence of the Neurotransmitter Serotonin.

Authors:  Anna Bochicchio; Astrid F Brandner; Oskar Engberg; Daniel Huster; Rainer A Böckmann
Journal:  Front Cell Dev Biol       Date:  2020-11-30

4.  Switching Cytolytic Nanopores into Antimicrobial Fractal Ruptures by a Single Side Chain Mutation.

Authors:  Katharine Hammond; Flaviu Cipcigan; Kareem Al Nahas; Valeria Losasso; Helen Lewis; Jehangir Cama; Fausto Martelli; Patrick W Simcock; Marcus Fletcher; Jascindra Ravi; Phillip J Stansfeld; Stefano Pagliara; Bart W Hoogenboom; Ulrich F Keyser; Mark S P Sansom; Jason Crain; Maxim G Ryadnov
Journal:  ACS Nano       Date:  2021-04-22       Impact factor: 15.881

5.  Predicting asymmetric phospholipid microstructures in solutions.

Authors:  Yue Shan; Yongyun Ji; Xianghong Wang; Linli He; Shiben Li
Journal:  RSC Adv       Date:  2020-06-26       Impact factor: 3.361

6.  Role of polyunsaturated phospholipids in liquid-ordered and liquid-disordered phases.

Authors:  Jing Yang; Jianyu Jin; Shiben Li
Journal:  RSC Adv       Date:  2021-08-09       Impact factor: 4.036

7.  Lipid interactions of an actinoporin pore-forming oligomer.

Authors:  Aliasghar Sepehri; Binod Nepal; Themis Lazaridis
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

8.  Computer simulations of a heterogeneous membrane with enhanced sampling techniques.

Authors:  Yevhen K Cherniavskyi; Arman Fathizadeh; Ron Elber; D Peter Tieleman
Journal:  J Chem Phys       Date:  2020-10-14       Impact factor: 3.488

9.  The Two Faces of the Liquid Ordered Phase.

Authors:  Itay Schachter; Riku O Paananen; Balázs Fábián; Piotr Jurkiewicz; Matti Javanainen
Journal:  J Phys Chem Lett       Date:  2022-02-01       Impact factor: 6.475

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.