Literature DB >> 23500617

Computer simulations of lipid membrane domains.

W F Drew Bennett1, D Peter Tieleman.   

Abstract

There is great diversity in the composition and structure of biological lipid membranes. We are beginning to appreciate the crucial role of lipids in many cellular processes, and characterize some of the lateral structures within membranes that could play a role in the activity of lipids. Simulations probe molecular level interactions between single molecules, which provide complementary information to experiments. Lipid membrane simulations have reached an exciting point, where the time and length scales of our simulations are approaching experimental resolutions and can be used to interpret experiments on increasingly complex model membranes. The focus of this review is on recent molecular simulations of domain formation in lipid bilayers. We highlight a number of recent examples where simulations are used in collaboration with experiments. We review recent simulation studies on lipid-lipid interactions related to domain formation and on lipid-protein interactions relevant for lipid raft function.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23500617     DOI: 10.1016/j.bbamem.2013.03.004

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  46 in total

1.  Phase Transition in a Heterogeneous Membrane: Atomically Detailed Picture.

Authors:  Arman Fathizadeh; Mason Valentine; Carlos R Baiz; Ron Elber
Journal:  J Phys Chem Lett       Date:  2020-06-18       Impact factor: 6.475

2.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

3.  A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes.

Authors:  Arman Fathizadeh; Ron Elber
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

4.  Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

Authors:  David G Ackerman; Gerald W Feigenson
Journal:  J Phys Chem B       Date:  2015-01-22       Impact factor: 2.991

5.  Geodesic curvature driven surface microdomain formation.

Authors:  Melissa R Adkins; Y C Zhou
Journal:  J Comput Phys       Date:  2017-05-18       Impact factor: 3.553

6.  Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

Review 7.  Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory.

Authors:  Thomas R Weikl; Jinglei Hu; Guang-Kui Xu; Reinhard Lipowsky
Journal:  Cell Adh Migr       Date:  2016-06-13       Impact factor: 3.405

8.  Interactions of amino acid side-chain analogs within membrane environments.

Authors:  Vahid Mirjalili; Michael Feig
Journal:  J Phys Chem B       Date:  2015-02-06       Impact factor: 2.991

Review 9.  The Continuing Mystery of Lipid Rafts.

Authors:  Ilya Levental; Sarah Veatch
Journal:  J Mol Biol       Date:  2016-08-26       Impact factor: 5.469

10.  A Coarse-Grained Model of Stratum Corneum Lipids: Free Fatty Acids and Ceramide NS.

Authors:  Timothy C Moore; Christopher R Iacovella; Remco Hartkamp; Annette L Bunge; Clare McCabe
Journal:  J Phys Chem B       Date:  2016-09-09       Impact factor: 2.991

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