Literature DB >> 32513746

Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation.

Alina K Niskanen1,2, Anna M Billing3, Håkon Holand3, Ingerid J Hagen3,4, Yimen G Araya-Ajoy3, Arild Husby3,5, Bernt Rønning3, Ane Marlene Myhre3, Peter Sjolte Ranke3, Thomas Kvalnes3,5, Henrik Pärn3, Thor Harald Ringsby3, Sigbjørn Lien6, Bernt-Erik Sæther3, Stefanie Muff7, Henrik Jensen3.   

Abstract

Inbreeding may increase the extinction risk of small populations. Yet, studies using modern genomic tools to investigate inbreeding depression in nature have been limited to single populations, and little is known about the dynamics of inbreeding depression in subdivided populations over time. Natural populations often experience different environmental conditions and differ in demographic history and genetic composition, characteristics that can affect the severity of inbreeding depression. We utilized extensive long-term data on more than 3,100 individuals from eight islands in an insular house sparrow metapopulation to examine the generality of inbreeding effects. Using genomic estimates of realized inbreeding, we discovered that inbred individuals had lower survival probabilities and produced fewer recruiting offspring than noninbred individuals. Inbreeding depression, measured as the decline in fitness-related traits per unit inbreeding, did not vary appreciably among populations or with time. As a consequence, populations with more resident inbreeding (due to their demographic history) paid a higher total fitness cost, evidenced by a larger variance in fitness explained by inbreeding within these populations. Our results are in contrast to the idea that effects of inbreeding generally depend on ecological factors and genetic differences among populations, and expand the understanding of inbreeding depression in natural subdivided populations.

Entities:  

Keywords:  SNP pedigree; house sparrow; inbreeding depression; individual fitness; metapopulation

Year:  2020        PMID: 32513746      PMCID: PMC7322018          DOI: 10.1073/pnas.1909599117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  Dynamics of inbreeding depression due to deleterious mutations in small populations: mutation parameters and inbreeding rate.

Authors:  J Wang; W G Hill; D Charlesworth; B Charlesworth
Journal:  Genet Res       Date:  1999-10       Impact factor: 1.588

2.  An ecologist's guide to the animal model.

Authors:  Alastair J Wilson; Denis Réale; Michelle N Clements; Michael M Morrissey; Erik Postma; Craig A Walling; Loeske E B Kruuk; Daniel H Nussey
Journal:  J Anim Ecol       Date:  2010-01       Impact factor: 5.091

3.  PLINK: a tool set for whole-genome association and population-based linkage analyses.

Authors:  Shaun Purcell; Benjamin Neale; Kathe Todd-Brown; Lori Thomas; Manuel A R Ferreira; David Bender; Julian Maller; Pamela Sklar; Paul I W de Bakker; Mark J Daly; Pak C Sham
Journal:  Am J Hum Genet       Date:  2007-07-25       Impact factor: 11.025

4.  Efficiency of selection, as measured by single nucleotide polymorphism variation, is dependent on inbreeding rate in Drosophila melanogaster.

Authors:  Ditte Demontis; Cino Pertoldi; Volker Loeschcke; Karina Mikkelsen; Tomas Axelsson; Torsten Nygaard Kristensen
Journal:  Mol Ecol       Date:  2009-09-25       Impact factor: 6.185

5.  Sex-specific effects of inbreeding on reproductive senescence.

Authors:  Raïssa A de Boer; Marcel Eens; Wendt Müller
Journal:  Proc Biol Sci       Date:  2018-05-30       Impact factor: 5.349

6.  Genomic Consequences of Population Decline in the Endangered Florida Scrub-Jay.

Authors:  Nancy Chen; Elissa J Cosgrove; Reed Bowman; John W Fitzpatrick; Andrew G Clark
Journal:  Curr Biol       Date:  2016-10-13       Impact factor: 10.834

7.  Sensitivity analysis of effective population size to demographic parameters in house sparrow populations.

Authors:  Marlene Waege Stubberud; Ane Marlene Myhre; Håkon Holand; Thomas Kvalnes; Thor Harald Ringsby; Bernt-Erik Saether; Henrik Jensen
Journal:  Mol Ecol       Date:  2017-03-13       Impact factor: 6.185

8.  Characterizing morphological (co)variation using structural equation models: Body size, allometric relationships and evolvability in a house sparrow metapopulation.

Authors:  Yimen G Araya-Ajoy; Peter Sjolte Ranke; Thomas Kvalnes; Bernt Rønning; Håkon Holand; Ane Marlene Myhre; Henrik Pärn; Henrik Jensen; Thor Harald Ringsby; Bernt-Erik Saether; Jonathan Wright
Journal:  Evolution       Date:  2019-01-17       Impact factor: 3.694

9.  Nonequivalent lethal equivalents: Models and inbreeding metrics for unbiased estimation of inbreeding load.

Authors:  Pirmin Nietlisbach; Stefanie Muff; Jane M Reid; Michael C Whitlock; Lukas F Keller
Journal:  Evol Appl       Date:  2018-10-23       Impact factor: 5.183

10.  Animal models and integrated nested Laplace approximations.

Authors:  Anna Marie Holand; Ingelin Steinsland; Sara Martino; Henrik Jensen
Journal:  G3 (Bethesda)       Date:  2013-08-07       Impact factor: 3.154

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  2 in total

1.  Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation.

Authors:  Alina K Niskanen; Anna M Billing; Håkon Holand; Ingerid J Hagen; Yimen G Araya-Ajoy; Arild Husby; Bernt Rønning; Ane Marlene Myhre; Peter Sjolte Ranke; Thomas Kvalnes; Henrik Pärn; Thor Harald Ringsby; Sigbjørn Lien; Bernt-Erik Sæther; Stefanie Muff; Henrik Jensen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

2.  Genetic architecture and lifetime dynamics of inbreeding depression in a wild mammal.

Authors:  M A Stoffel; S E Johnston; J G Pilkington; J M Pemberton
Journal:  Nat Commun       Date:  2021-05-20       Impact factor: 14.919

  2 in total

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