Literature DB >> 32491175

Tox21BodyMap: a webtool to map chemical effects on the human body.

Alexandre Borrel1, Scott S Auerbach2, Keith A Houck3, Nicole C Kleinstreuer1,4.   

Abstract

To support rapid chemical toxicity assessment and mechanistic hypothesis generation, here we present an intuitive webtool allowing a user to identify target organs in the human body where a substance is estimated to be more likely to produce effects. This tool, called Tox21BodyMap, incorporates results of 9,270 chemicals tested in the United States federal Tox21 research consortium in 971 high-throughput screening (HTS) assays whose targets were mapped onto human organs using organ-specific gene expression data. Via Tox21BodyMap's interactive tools, users can visualize chemical target specificity by organ system, and implement different filtering criteria by changing gene expression thresholds and activity concentration parameters. Dynamic network representations, data tables, and plots with comprehensive activity summaries across all Tox21 HTS assay targets provide an overall picture of chemical bioactivity. Tox21BodyMap webserver is available at https://sandbox.ntp.niehs.nih.gov/bodymap/. Published by Oxford University Press on behalf of Nucleic Acids Research 2020.

Entities:  

Year:  2020        PMID: 32491175      PMCID: PMC7319561          DOI: 10.1093/nar/gkaa433

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

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Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

Review 3.  Hormone Therapy and Other Treatments for Symptoms of Menopause.

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4.  Phenotypic screening of the ToxCast chemical library to classify toxic and therapeutic mechanisms.

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Journal:  Science       Date:  2017-08-18       Impact factor: 47.728

Review 7.  Estrogen metabolism and breast cancer.

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Review 8.  Estradiol and the developing brain.

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9.  A subcellular map of the human proteome.

Authors:  Peter J Thul; Lovisa Åkesson; Mikaela Wiking; Diana Mahdessian; Aikaterini Geladaki; Hammou Ait Blal; Tove Alm; Anna Asplund; Lars Björk; Lisa M Breckels; Anna Bäckström; Frida Danielsson; Linn Fagerberg; Jenny Fall; Laurent Gatto; Christian Gnann; Sophia Hober; Martin Hjelmare; Fredric Johansson; Sunjae Lee; Cecilia Lindskog; Jan Mulder; Claire M Mulvey; Peter Nilsson; Per Oksvold; Johan Rockberg; Rutger Schutten; Jochen M Schwenk; Åsa Sivertsson; Evelina Sjöstedt; Marie Skogs; Charlotte Stadler; Devin P Sullivan; Hanna Tegel; Casper Winsnes; Cheng Zhang; Martin Zwahlen; Adil Mardinoglu; Fredrik Pontén; Kalle von Feilitzen; Kathryn S Lilley; Mathias Uhlén; Emma Lundberg
Journal:  Science       Date:  2017-05-11       Impact factor: 47.728

10.  CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity.

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Journal:  Environ Health Perspect       Date:  2020-02-07       Impact factor: 9.031

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  1 in total

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  1 in total

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