Literature DB >> 32483330

DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.

Thanin Chantarachot1, Reed S Sorenson2, Maureen Hummel1, Haiyan Ke1, Alek T Kettenburg1, Daniel Chen1, Karen Aiyetiwa1, Katayoon Dehesh1, Thomas Eulgem1, Leslie E Sieburth2, Julia Bailey-Serres3.   

Abstract

Gene transcription is counterbalanced by messenger RNA decay processes that regulate transcript quality and quantity. We show here that the evolutionarily conserved DHH1/DDX6-like RNA hellicases of Arabidopsis thaliana control the ephemerality of a subset of cellular mRNAs. These RNA helicases co-localize with key markers of processing bodies and stress granules and contribute to their subcellular dynamics. They function to limit the precocious accumulation and ribosome association of stress-responsive mRNAs involved in auto-immunity and growth inhibition under non-stress conditions. Given the conservation of this RNA helicase subfamily, they may control basal levels of conditionally regulated mRNAs in diverse eukaryotes, accelerating responses without penalty.

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Year:  2020        PMID: 32483330     DOI: 10.1038/s41477-020-0681-8

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  43 in total

1.  Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.

Authors:  Ujwal Sheth; Roy Parker
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

Review 2.  [Tunica albuginea cyst associated with hydrocele testis: report of a case].

Authors:  C J Kim; M Kushima; Y Okada; T Tomoyoshi
Journal:  Hinyokika Kiyo       Date:  1991-09

Review 3.  Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems.

Authors:  Aleksandra Siwaszek; Marta Ukleja; Andrzej Dziembowski
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

4.  P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.

Authors:  Arnaud Hubstenberger; Maïté Courel; Marianne Bénard; Sylvie Souquere; Michèle Ernoult-Lange; Racha Chouaib; Zhou Yi; Jean-Baptiste Morlot; Annie Munier; Magali Fradet; Maëlle Daunesse; Edouard Bertrand; Gérard Pierron; Julien Mozziconacci; Michel Kress; Dominique Weil
Journal:  Mol Cell       Date:  2017-09-28       Impact factor: 17.970

Review 5.  Polysomes, Stress Granules, and Processing Bodies: A Dynamic Triumvirate Controlling Cytoplasmic mRNA Fate and Function.

Authors:  Thanin Chantarachot; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2017-11-20       Impact factor: 8.340

6.  Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes.

Authors:  Weiping Zhang; Caroline Murphy; Leslie E Sieburth
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

7.  Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis.

Authors:  Reed Sorenson; Julia Bailey-Serres
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

8.  Arabidopsis decapping 5 is required for mRNA decapping, P-body formation, and translational repression during postembryonic development.

Authors:  Jun Xu; Nam-Hai Chua
Journal:  Plant Cell       Date:  2009-10-23       Impact factor: 11.277

9.  Arabidopsis mRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy.

Authors:  Reed S Sorenson; Malia J Deshotel; Katrina Johnson; Frederick R Adler; Leslie E Sieburth
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-31       Impact factor: 11.205

10.  Components of the Arabidopsis mRNA decapping complex are required for early seedling development.

Authors:  David C Goeres; Jaimie M Van Norman; Weiping Zhang; Nellie A Fauver; Mary Lou Spencer; Leslie E Sieburth
Journal:  Plant Cell       Date:  2007-05-18       Impact factor: 11.277

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  12 in total

1.  A NYN domain protein directly interacts with DECAPPING1 and is required for phyllotactic pattern.

Authors:  Marlene Schiaffini; Clara Chicois; Aude Pouclet; Tiphaine Chartier; Elodie Ubrig; Anthony Gobert; Hélène Zuber; Jérôme Mutterer; Johana Chicher; Lauriane Kuhn; Philippe Hammann; Dominique Gagliardi; Damien Garcia
Journal:  Plant Physiol       Date:  2022-02-04       Impact factor: 8.340

2.  A photoregulatory mechanism of the circadian clock in Arabidopsis.

Authors:  Xu Wang; Bochen Jiang; Lianfeng Gu; Yadi Chen; Manuel Mora; Mulangma Zhu; Eliace Noory; Qin Wang; Chentao Lin
Journal:  Nat Plants       Date:  2021-10-14       Impact factor: 15.793

3.  ALBA proteins confer thermotolerance through stabilizing HSF messenger RNAs in cytoplasmic granules.

Authors:  Jinjin Tong; Zhitong Ren; Linhua Sun; Sixian Zhou; Wei Yuan; Yufan Hui; Dong Ci; Wei Wang; Liu-Min Fan; Zhe Wu; Weiqiang Qian
Journal:  Nat Plants       Date:  2022-07-11       Impact factor: 17.352

4.  A New Long Noncoding RNA, MAHAT, Inhibits Replication of Porcine Reproductive and Respiratory Syndrome Virus by Recruiting DDX6 To Bind to ZNF34 and Promote an Innate Immune Response.

Authors:  Yuming Liu; Xing Liu; Juan Bai; Yangyang Sun; Hans Nauwynck; Xianwei Wang; Yuanqi Yang; Ping Jiang
Journal:  J Virol       Date:  2022-09-08       Impact factor: 6.549

5.  The emerging role of biomolecular condensates in plant immunity.

Authors:  Wei Wang; Yangnan Gu
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

6.  Transcriptional and post-transcriptional regulation of young genes in plants.

Authors:  Vivek Kumar Raxwal; Somya Singh; Manu Agarwal; Karel Riha
Journal:  BMC Biol       Date:  2022-06-09       Impact factor: 7.364

7.  Monitoring of XRN4 Targets Reveals the Importance of Cotranslational Decay during Arabidopsis Development.

Authors:  Marie-Christine Carpentier; Jean-Marc Deragon; Viviane Jean; Seng Hour Vichet Be; Cécile Bousquet-Antonelli; Rémy Merret
Journal:  Plant Physiol       Date:  2020-09-10       Impact factor: 8.340

8.  DEAD-box helicases modulate dicing body formation in Arabidopsis.

Authors:  Qi Li; Ningkun Liu; Qing Liu; Xingguo Zheng; Lu Lu; Wenrui Gao; Yang Liu; Yan Liu; Shicheng Zhang; Qian Wang; Jing Pan; Chen Chen; Yingjie Mi; Meiling Yang; Xiaofei Cheng; Guodong Ren; Yao-Wu Yuan; Xiaoming Zhang
Journal:  Sci Adv       Date:  2021-04-28       Impact factor: 14.136

Review 9.  RNA-Binding Proteins: The Key Modulator in Stress Granule Formation and Abiotic Stress Response.

Authors:  Yanyan Yan; Jianghuang Gan; Yilin Tao; Thomas W Okita; Li Tian
Journal:  Front Plant Sci       Date:  2022-06-15       Impact factor: 6.627

10.  Plant autoimmunity-fresh insights into an old phenomenon.

Authors:  Matthias Freh; Jinlan Gao; Morten Petersen; Ralph Panstruga
Journal:  Plant Physiol       Date:  2022-03-04       Impact factor: 8.340

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