Literature DB >> 32477638

A Review of Challenges and Opportunities in Machine Learning for Health.

Marzyeh Ghassemi1, Tristan Naumann2, Peter Schulam3, Andrew L Beam4, Irene Y Chen5, Rajesh Ranganath6.   

Abstract

Modern electronic health records (EHRs) provide data to answer clinically meaningful questions. The growing data in EHRs makes healthcare ripe for the use of machine learning. However, learning in a clinical setting presents unique challenges that complicate the use of common machine learning methodologies. For example, diseases in EHRs are poorly labeled, conditions can encompass multiple underlying endotypes, and healthy individuals are underrepresented. This article serves as a primer to illuminate these challenges and highlights opportunities for members of the machine learning community to contribute to healthcare. ©2020 AMIA - All rights reserved.

Year:  2020        PMID: 32477638      PMCID: PMC7233077     

Source DB:  PubMed          Journal:  AMIA Jt Summits Transl Sci Proc


  62 in total

1.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  KDIGO clinical practice guidelines for acute kidney injury.

Authors:  Arif Khwaja
Journal:  Nephron Clin Pract       Date:  2012-08-07

Review 3.  Systems biology: personalized medicine for the future?

Authors:  Rui Chen; Michael Snyder
Journal:  Curr Opin Pharmacol       Date:  2012-07-31       Impact factor: 5.547

4.  Medicine's uncomfortable relationship with math: calculating positive predictive value.

Authors:  Arjun K Manrai; Gaurav Bhatia; Judith Strymish; Isaac S Kohane; Sachin H Jain
Journal:  JAMA Intern Med       Date:  2014-06       Impact factor: 21.873

5.  Capacity building for assessing new technologies: approaches to examining personalized medicine in practice.

Authors:  Stephanie L Van Bebber; Julia R Trosman; Su-Ying Liang; Grace Wang; Deborah A Marshall; Sara Knight; Kathryn A Phillips
Journal:  Per Med       Date:  2010-07       Impact factor: 2.512

6.  Comorbidity clusters in autism spectrum disorders: an electronic health record time-series analysis.

Authors:  Finale Doshi-Velez; Yaorong Ge; Isaac Kohane
Journal:  Pediatrics       Date:  2013-12-09       Impact factor: 7.124

7.  An architecture for a continuous, user-driven, and data-driven application of clinical guidelines and its evaluation.

Authors:  Erez Shalom; Yuval Shahar; Eitan Lunenfeld
Journal:  J Biomed Inform       Date:  2015-11-23       Impact factor: 6.317

8.  Combined analysis of Women's Health Initiative observational and clinical trial data on postmenopausal hormone treatment and cardiovascular disease.

Authors:  Ross L Prentice; Robert D Langer; Marcia L Stefanick; Barbara V Howard; Mary Pettinger; Garnet L Anderson; David Barad; J David Curb; Jane Kotchen; Lewis Kuller; Marian Limacher; Jean Wactawski-Wende
Journal:  Am J Epidemiol       Date:  2006-02-16       Impact factor: 4.897

9.  The impact of standardized order sets and intensive clinical case management on outcomes in community-acquired pneumonia.

Authors:  Steven Fishbane; Michael S Niederman; Colleen Daly; Adam Magin; Masateru Kawabata; André de Corla-Souza; Irum Choudhery; Gerald Brody; Maureen Gaffney; Simcha Pollack; Suzanne Parker
Journal:  Arch Intern Med       Date:  2007 Aug 13-27

10.  Electronic medical record phenotyping using the anchor and learn framework.

Authors:  Yoni Halpern; Steven Horng; Youngduck Choi; David Sontag
Journal:  J Am Med Inform Assoc       Date:  2016-04-23       Impact factor: 4.497

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  32 in total

1.  Evaluation of Electronic Health Record-Based Suicide Risk Prediction Models on Contemporary Data.

Authors:  Rod L Walker; Susan M Shortreed; Rebecca A Ziebell; Eric Johnson; Jennifer M Boggs; Frances L Lynch; Yihe G Daida; Brian K Ahmedani; Rebecca Rossom; Karen J Coleman; Gregory E Simon
Journal:  Appl Clin Inform       Date:  2021-08-18       Impact factor: 2.762

2.  Ethical Machine Learning in Healthcare.

Authors:  Irene Y Chen; Emma Pierson; Sherri Rose; Shalmali Joshi; Kadija Ferryman; Marzyeh Ghassemi
Journal:  Annu Rev Biomed Data Sci       Date:  2021-05-06

3.  Forecasting the future clinical events of a patient through contrastive learning.

Authors:  Ziqi Zhang; Chao Yan; Xinmeng Zhang; Steve L Nyemba; Bradley A Malin
Journal:  J Am Med Inform Assoc       Date:  2022-08-16       Impact factor: 7.942

Review 4.  Machine Learning for Renal Pathologies: An Updated Survey.

Authors:  Roberto Magherini; Elisa Mussi; Yary Volpe; Rocco Furferi; Francesco Buonamici; Michaela Servi
Journal:  Sensors (Basel)       Date:  2022-07-01       Impact factor: 3.847

5.  An effective up-sampling approach for breast cancer prediction with imbalanced data: A machine learning model-based comparative analysis.

Authors:  Tuan Tran; Uyen Le; Yihui Shi
Journal:  PLoS One       Date:  2022-05-27       Impact factor: 3.752

6.  The roles of the US National Library of Medicine and Donald A.B. Lindberg in revolutionizing biomedical and health informatics.

Authors:  Randolph A Miller; Edward H Shortliffe
Journal:  J Am Med Inform Assoc       Date:  2021-11-25       Impact factor: 7.942

7.  Rethinking PICO in the Machine Learning Era: ML-PICO.

Authors:  Xinran Liu; James Anstey; Ron Li; Chethan Sarabu; Reiri Sono; Atul J Butte
Journal:  Appl Clin Inform       Date:  2021-05-19       Impact factor: 2.342

8.  Evaluation of two European risk models for predicting medication harm in an Australian patient cohort.

Authors:  Nazanin Falconer; Michael Barras; Ahmad Abdel-Hafiz; Sam Radburn; Neil Cottrell
Journal:  Eur J Clin Pharmacol       Date:  2022-01-18       Impact factor: 2.953

9.  Machine Learning for Geriatric Clinical Care: Opportunities and Challenges.

Authors:  Nazila Javadi-Pashaki; Mohammad Javad Ghazanfari; Samad Karkhah
Journal:  Ann Geriatr Med Res       Date:  2021-06-21

10.  Application of the random forest algorithm to Streptococcus pyogenes response regulator allele variation: from machine learning to evolutionary models.

Authors:  Sean J Buckley; Robert J Harvey; Zack Shan
Journal:  Sci Rep       Date:  2021-06-16       Impact factor: 4.379

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