Literature DB >> 32469313

Plasmodium falciparum translational machinery condones polyadenosine repeats.

Slavica Pavlovic Djuranovic1, Jessey Erath1, Ryan J Andrews2, Peter O Bayguinov3, Joyce J Chung4, Douglas L Chalker4, James Aj Fitzpatrick1,3,5,6, Walter N Moss2, Pawel Szczesny7, Sergej Djuranovic1.   

Abstract

Plasmodium falciparum is a causative agent of human malaria. Sixty percent of mRNAs from its extremely AT-rich (81%) genome harbor long polyadenosine (polyA) runs within their ORFs, distinguishing the parasite from its hosts and other sequenced organisms. Recent studies indicate polyA runs cause ribosome stalling and frameshifting, triggering mRNA surveillance pathways and attenuating protein synthesis. Here, we show that P. falciparum is an exception to this rule. We demonstrate that both endogenous genes and reporter sequences containing long polyA runs are efficiently and accurately translated in P. falciparum cells. We show that polyA runs do not elicit any response from No Go Decay (NGD) or result in the production of frameshifted proteins. This is in stark contrast to what we observe in human cells or T. thermophila, an organism with similar AT-content. Finally, using stalling reporters we show that Plasmodium cells evolved not to have a fully functional NGD pathway.
© 2020, Pavlovic Djuranovic et al.

Entities:  

Keywords:  biochemistry; cell biology; chemical biology; human; mRNA; no go decay; poly lysine; polyA; translation

Mesh:

Substances:

Year:  2020        PMID: 32469313      PMCID: PMC7295572          DOI: 10.7554/eLife.57799

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  115 in total

1.  Human malaria parasites in continuous culture. 1976.

Authors:  William Trager; James B Jensen
Journal:  J Parasitol       Date:  2005-06       Impact factor: 1.276

2.  The No-go decay system degrades plant mRNAs that contain a long A-stretch in the coding region.

Authors:  István Szádeczky-Kardoss; Luca Gál; Andor Auber; János Taller; Dániel Silhavy
Journal:  Plant Sci       Date:  2018-07-21       Impact factor: 4.729

3.  Polysome profiling of the malaria parasite Plasmodium falciparum.

Authors:  Joshua R Lacsina; Gregory LaMonte; Christopher V Nicchitta; Jen-Tsan Chi
Journal:  Mol Biochem Parasitol       Date:  2011-05-13       Impact factor: 1.759

4.  Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis.

Authors:  Min Zhang; Chengqi Wang; Thomas D Otto; Jenna Oberstaller; Xiangyun Liao; Swamy R Adapa; Kenneth Udenze; Iraad F Bronner; Deborah Casandra; Matthew Mayho; Jacqueline Brown; Suzanne Li; Justin Swanson; Julian C Rayner; Rays H Y Jiang; John H Adams
Journal:  Science       Date:  2018-05-04       Impact factor: 47.728

5.  Codon usage in Plasmodium falciparum.

Authors:  A Saul; D Battistutta
Journal:  Mol Biochem Parasitol       Date:  1988-01-01       Impact factor: 1.759

6.  Translation of poly(A) tails leads to precise mRNA cleavage.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  RNA       Date:  2017-02-13       Impact factor: 4.942

7.  RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression.

Authors:  Collin A O'Leary; Ryan J Andrews; Van S Tompkins; Jonathan L Chen; Jessica L Childs-Disney; Matthew D Disney; Walter N Moss
Journal:  PLoS One       Date:  2019-06-17       Impact factor: 3.240

8.  HIV-1 frameshift efficiency is primarily determined by the stability of base pairs positioned at the mRNA entrance channel of the ribosome.

Authors:  Kathryn D Mouzakis; Andrew L Lang; Kirk A Vander Meulen; Preston D Easterday; Samuel E Butcher
Journal:  Nucleic Acids Res       Date:  2012-12-16       Impact factor: 16.971

9.  Analyses of interactions between heparin and the apical surface proteins of Plasmodium falciparum.

Authors:  Kyousuke Kobayashi; Ryo Takano; Hitoshi Takemae; Tatsuki Sugi; Akiko Ishiwa; Haiyan Gong; Frances C Recuenco; Tatsuya Iwanaga; Taisuke Horimoto; Hiroomi Akashi; Kentaro Kato
Journal:  Sci Rep       Date:  2013-11-11       Impact factor: 4.379

10.  Role of mRNA structure in the control of protein folding.

Authors:  Guilhem Faure; Aleksey Y Ogurtsov; Svetlana A Shabalina; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2016-07-27       Impact factor: 16.971

View more
  4 in total

1.  A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome.

Authors:  Ghizal Siddiqui; Amanda De Paoli; Christopher A MacRaild; Anna E Sexton; Coralie Boulet; Anup D Shah; Mitchell B Batty; Ralf B Schittenhelm; Teresa G Carvalho; Darren J Creek
Journal:  Gigascience       Date:  2022-03-07       Impact factor: 6.524

2.  Pervasive sequence-level variation in the transcriptome of Plasmodium falciparum.

Authors:  Bruhad Dave; Abhishek Kanyal; D V Mamatharani; Krishanpal Karmodiya
Journal:  NAR Genom Bioinform       Date:  2022-05-17

Review 3.  Detecting and Rescuing Stalled Ribosomes.

Authors:  Matthew C J Yip; Sichen Shao
Journal:  Trends Biochem Sci       Date:  2021-05-06       Impact factor: 14.264

4.  Functional characterization of 5' UTR cis-acting sequence elements that modulate translational efficiency in Plasmodium falciparum and humans.

Authors:  Valentina E Garcia; Rebekah Dial; Joseph L DeRisi
Journal:  Malar J       Date:  2022-01-06       Impact factor: 2.979

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.