Literature DB >> 32467997

Artificial intelligence radiogenomics for advancing precision and effectiveness in oncologic care (Review).

Eleftherios Trivizakis1, Georgios Z Papadakis2, Ioannis Souglakos3, Nikolaos Papanikolaou2, Lefteris Koumakis2, Demetrios A Spandidos4, Aristidis Tsatsakis5, Apostolos H Karantanas2, Kostas Marias2.   

Abstract

The new era of artificial intelligence (AI) has introduced revolutionary data‑driven analysis paradigms that have led to significant advancements in information processing techniques in the context of clinical decision‑support systems. These advances have created unprecedented momentum in computational medical imaging applications and have given rise to new precision medicine research areas. Radiogenomics is a novel research field focusing on establishing associations between radiological features and genomic or molecular expression in order to shed light on the underlying disease mechanisms and enhance diagnostic procedures towards personalized medicine. The aim of the current review was to elucidate recent advances in radiogenomics research, focusing on deep learning with emphasis on radiology and oncology applications. The main deep learning radiogenomics architectures, together with the clinical questions addressed, and the achieved genetic or molecular correlations are presented, while a performance comparison of the proposed methodologies is conducted. Finally, current limitations, potentially understudied topics and future research directions are discussed.

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Year:  2020        PMID: 32467997      PMCID: PMC7252460          DOI: 10.3892/ijo.2020.5063

Source DB:  PubMed          Journal:  Int J Oncol        ISSN: 1019-6439            Impact factor:   5.650


  30 in total

1.  Extending 2-D Convolutional Neural Networks to 3-D for Advancing Deep Learning Cancer Classification With Application to MRI Liver Tumor Differentiation.

Authors:  Eleftherios Trivizakis; Georgios C Manikis; Katerina Nikiforaki; Konstantinos Drevelegas; Manos Constantinides; Antonios Drevelegas; Kostas Marias
Journal:  IEEE J Biomed Health Inform       Date:  2018-12-11       Impact factor: 5.772

2.  Transfer learning on fused multiparametric MR images for classifying histopathological subtypes of rhabdomyosarcoma.

Authors:  Imon Banerjee; Alexis Crawley; Mythili Bhethanabotla; Heike E Daldrup-Link; Daniel L Rubin
Journal:  Comput Med Imaging Graph       Date:  2017-05-05       Impact factor: 4.790

3.  Deep learning analysis of breast MRIs for prediction of occult invasive disease in ductal carcinoma in situ.

Authors:  Zhe Zhu; Michael Harowicz; Jun Zhang; Ashirbani Saha; Lars J Grimm; E Shelley Hwang; Maciej A Mazurowski
Journal:  Comput Biol Med       Date:  2019-10-16       Impact factor: 4.589

4.  Predicting Lymph Node Metastasis in Head and Neck Cancer by Combining Many-objective Radiomics and 3-dimensioal Convolutional Neural Network through Evidential Reasoning.

Authors:  Zhiguo Zhou; Liyuan Chen; David Sher; Qiongwen Zhang; Jennifer Shah; Nhat-Long Pham; Steve Jiang; Jing Wang
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

5.  Qualitative Radiogenomics: Association between Oncotype DX Test Recurrence Score and BI-RADS Mammographic and Breast MR Imaging Features.

Authors:  Genevieve A Woodard; Kimberly M Ray; Bonnie N Joe; Elissa R Price
Journal:  Radiology       Date:  2017-09-08       Impact factor: 11.105

Review 6.  Poor-prognosis high-grade gliomas: evolving an evidence-based standard of care.

Authors:  Tejpal Gupta; Rajiv Sarin
Journal:  Lancet Oncol       Date:  2002-09       Impact factor: 41.316

7.  Deep-Learning Convolutional Neural Networks Accurately Classify Genetic Mutations in Gliomas.

Authors:  P Chang; J Grinband; B D Weinberg; M Bardis; M Khy; G Cadena; M-Y Su; S Cha; C G Filippi; D Bota; P Baldi; L M Poisson; R Jain; D Chow
Journal:  AJNR Am J Neuroradiol       Date:  2018-05-10       Impact factor: 3.825

8.  Residual Convolutional Neural Network for the Determination of IDH Status in Low- and High-Grade Gliomas from MR Imaging.

Authors:  Ken Chang; Harrison X Bai; Hao Zhou; Chang Su; Wenya Linda Bi; Ena Agbodza; Vasileios K Kavouridis; Joeky T Senders; Alessandro Boaro; Andrew Beers; Biqi Zhang; Alexandra Capellini; Weihua Liao; Qin Shen; Xuejun Li; Bo Xiao; Jane Cryan; Shakti Ramkissoon; Lori Ramkissoon; Keith Ligon; Patrick Y Wen; Ranjit S Bindra; John Woo; Omar Arnaout; Elizabeth R Gerstner; Paul J Zhang; Bruce R Rosen; Li Yang; Raymond Y Huang; Jayashree Kalpathy-Cramer
Journal:  Clin Cancer Res       Date:  2017-11-22       Impact factor: 13.801

9.  Predictive radiogenomics modeling of EGFR mutation status in lung cancer.

Authors:  Olivier Gevaert; Sebastian Echegaray; Amanda Khuong; Chuong D Hoang; Joseph B Shrager; Kirstin C Jensen; Gerald J Berry; H Henry Guo; Charles Lau; Sylvia K Plevritis; Daniel L Rubin; Sandy Napel; Ann N Leung
Journal:  Sci Rep       Date:  2017-01-31       Impact factor: 4.379

10.  On-treatment biomarkers can improve prediction of response to neoadjuvant chemotherapy in breast cancer.

Authors:  Richard J Bownes; Arran K Turnbull; Carlos Martinez-Perez; David A Cameron; Andrew H Sims; Olga Oikonomidou
Journal:  Breast Cancer Res       Date:  2019-06-14       Impact factor: 6.466

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  11 in total

Review 1.  What Genetics Can Do for Oncological Imaging: A Systematic Review of the Genetic Validation Data Used in Radiomics Studies.

Authors:  Rebeca Mirón Mombiela; Anne Rix Arildskov; Frederik Jager Bruun; Lotte Harries Hasselbalch; Kristine Bærentz Holst; Sine Hvid Rasmussen; Consuelo Borrás
Journal:  Int J Mol Sci       Date:  2022-06-10       Impact factor: 6.208

Review 2.  Role of Artificial Intelligence in Radiogenomics for Cancers in the Era of Precision Medicine.

Authors:  Sanjay Saxena; Biswajit Jena; Neha Gupta; Suchismita Das; Deepaneeta Sarmah; Pallab Bhattacharya; Tanmay Nath; Sudip Paul; Mostafa M Fouda; Manudeep Kalra; Luca Saba; Gyan Pareek; Jasjit S Suri
Journal:  Cancers (Basel)       Date:  2022-06-09       Impact factor: 6.575

3.  Application of Machine Learning Algorithms in Breast Cancer Diagnosis and Classification.

Authors:  Clement G Yedjou; Solange S Tchounwou; Richard A Aló; Rashid Elhag; BereKet Mochona; Lekan Latinwo
Journal:  Int J Sci Acad Res       Date:  2021-10-30

Review 4.  Artificial intelligence in paediatric radiology: Future opportunities.

Authors:  Natasha Davendralingam; Neil J Sebire; Owen J Arthurs; Susan C Shelmerdine
Journal:  Br J Radiol       Date:  2020-09-17       Impact factor: 3.039

Review 5.  Challenges and opportunities for artificial intelligence in oncological imaging.

Authors:  H M C Cheung; D Rubin
Journal:  Clin Radiol       Date:  2021-04-24       Impact factor: 3.389

Review 6.  Radiomic and Genomic Machine Learning Method Performance for Prostate Cancer Diagnosis: Systematic Literature Review.

Authors:  Leandro Pecchia; Monica Franzese; Rossana Castaldo; Carlo Cavaliere; Andrea Soricelli; Marco Salvatore
Journal:  J Med Internet Res       Date:  2021-04-01       Impact factor: 5.428

Review 7.  Emerging Applications of Radiomics in Neurological Disorders: A Review.

Authors:  Houman Sotoudeh; Amir Hossein Sarrami; Glenn H Roberson; Omid Shafaat; Zahra Sadaatpour; Ali Rezaei; Gagandeep Choudhary; Aparna Singhal; Ehsan Sotoudeh; Manoj Tanwar
Journal:  Cureus       Date:  2021-12-01

8.  CHAIMELEON Project: Creation of a Pan-European Repository of Health Imaging Data for the Development of AI-Powered Cancer Management Tools.

Authors:  Luis Martí Bonmatí; Ana Miguel; Amelia Suárez; Mario Aznar; Jean Paul Beregi; Laure Fournier; Emanuele Neri; Andrea Laghi; Manuela França; Francesco Sardanelli; Tobias Penzkofer; Phillipe Lambin; Ignacio Blanquer; Marion I Menzel; Karine Seymour; Sergio Figueiras; Katharina Krischak; Ricard Martínez; Yisroel Mirsky; Guang Yang; Ángel Alberich-Bayarri
Journal:  Front Oncol       Date:  2022-02-24       Impact factor: 6.244

Review 9.  Precision Medicine, AI, and the Future of Personalized Health Care.

Authors:  Kevin B Johnson; Wei-Qi Wei; Dilhan Weeraratne; Mark E Frisse; Karl Misulis; Kyu Rhee; Juan Zhao; Jane L Snowdon
Journal:  Clin Transl Sci       Date:  2020-10-12       Impact factor: 4.689

10.  Deep Radiotranscriptomics of Non-Small Cell Lung Carcinoma for Assessing Molecular and Histology Subtypes with a Data-Driven Analysis.

Authors:  Eleftherios Trivizakis; John Souglakos; Apostolos Karantanas; Kostas Marias
Journal:  Diagnostics (Basel)       Date:  2021-12-17
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