Literature DB >> 32452204

Faces of Contemporary CryoEM Information and Modeling.

Giulia Palermo1, Yuji Sugita2,3,4, Willy Wriggers5, Rommie E Amaro6.   

Abstract

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Year:  2020        PMID： 32452204      PMCID： PMC7838532          DOI： 10.1021/acs.jcim.0c00481

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN： 1549-9596            Impact factor:   4.956


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  27 in total

1.  Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.

Authors:  Sumudu P Leelananda; Steffen Lindert
Journal:  J Chem Inf Model       Date:  2019-12-24       Impact factor: 4.956

2.  Frontiers in CryoEM Modeling.

Authors:  Giulia Palermo; Yuji Sugita; Willy Wriggers; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2019-06-13       Impact factor: 4.956

3.  Exploiting Cryo-EM Structural Information and All-Atom Simulations To Decrypt the Molecular Mechanism of Splicing Modulators.

Authors:  Jure Borišek; Andrea Saltalamacchia; Angelo Spinello; Alessandra Magistrato
Journal:  J Chem Inf Model       Date:  2019-10-03       Impact factor: 4.956

4.  Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution.

Authors:  Julio Kovacs; Junha Song; Manfred Auer; Jing He; Wade Hunter; Willy Wriggers
Journal:  J Chem Inf Model       Date:  2020-03-19       Impact factor: 4.956

5.  A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit).

Authors:  Mauricio G S Costa; Charline Fagnen; Catherine Vénien-Bryan; David Perahia
Journal:  J Chem Inf Model       Date:  2020-01-28       Impact factor: 4.956

6.  Need for Cross-Validation of Single Particle Cryo-EM.

Authors:  Pilar Cossio
Journal:  J Chem Inf Model       Date:  2020-02-26       Impact factor: 4.956

7.  What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data?

Authors:  James S Fraser; Kresten Lindorff-Larsen; Massimiliano Bonomi
Journal:  J Chem Inf Model       Date:  2020-02-24       Impact factor: 4.956

8.  Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction?

Authors:  Luciano A Abriata; Matteo Dal Peraro
Journal:  J Chem Inf Model       Date:  2020-03-18       Impact factor: 4.956

9.  POLARIS: Path of Least Action Analysis on Energy Landscapes.

Authors:  Evan Seitz; Joachim Frank
Journal:  J Chem Inf Model       Date:  2020-02-20       Impact factor: 4.956

10.  Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials.

Authors:  John W Vant; Shae-Lynn J Lahey; Kalyanashis Jana; Mrinal Shekhar; Daipayan Sarkar; Barbara H Munk; Ulrich Kleinekathöfer; Sumit Mittal; Christopher Rowley; Abhishek Singharoy
Journal:  J Chem Inf Model       Date:  2020-03-30       Impact factor: 4.956
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  1 in total

1.  Molecular Dynamics to Predict Cryo-EM: Capturing Transitions and Short-Lived Conformational States of Biomolecules.

Authors:  Łukasz Nierzwicki; Giulia Palermo
Journal:  Front Mol Biosci       Date:  2021-04-05
  1 in total

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