Literature DB >> 32134661

Will Cryo-Electron Microscopy Shift the Current Paradigm in Protein Structure Prediction?

Luciano A Abriata1,2, Matteo Dal Peraro1,2.   

Abstract

Protein dynamics is undoubtedly a pervasive ingredient in all biological functions. However, structural biology has been strongly driven by a static-centered view of protein architecture. We argue that the recent advances of cryo-electron microscopy (EM) have the potential to more broadly explore the conformational landscapes of protein complexes and therefore will enhance our ability to predict the diverse conformations of tertiary and quaternary protein structures that are functionally relevant in physiological conditions.

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Year:  2020        PMID: 32134661     DOI: 10.1021/acs.jcim.0c00177

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  5 in total

1.  Faces of Contemporary CryoEM Information and Modeling.

Authors:  Giulia Palermo; Yuji Sugita; Willy Wriggers; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2020-05-26       Impact factor: 4.956

2.  CryoFold: determining protein structures and data-guided ensembles from cryo-EM density maps.

Authors:  Mrinal Shekhar; Genki Terashi; Chitrak Gupta; Daipayan Sarkar; Gaspard Debussche; Nicholas J Sisco; Jonathan Nguyen; Arup Mondal; John Vant; Petra Fromme; Wade D Van Horn; Emad Tajkhorshid; Daisuke Kihara; Ken Dill; Alberto Perez; Abhishek Singharoy
Journal:  Matter       Date:  2021-09-22

3.  CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles.

Authors:  Sylvain Träger; Giorgio Tamò; Deniz Aydin; Giulia Fonti; Martina Audagnotto; Matteo Dal Peraro
Journal:  Bioinformatics       Date:  2021-05-17       Impact factor: 6.937

4.  Simultaneous Assignment and Structure Determination of Proteins From Sparsely Labeled NMR Datasets.

Authors:  Arup Mondal; Alberto Perez
Journal:  Front Mol Biosci       Date:  2021-11-24

Review 5.  Deep Learning-Based Advances in Protein Structure Prediction.

Authors:  Subash C Pakhrin; Bikash Shrestha; Badri Adhikari; Dukka B Kc
Journal:  Int J Mol Sci       Date:  2021-05-24       Impact factor: 5.923

  5 in total

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