| Literature DB >> 32450873 |
Yan-Jie Qu1, Rong-Rong Zhen1, Li-Min Zhang1, Chao Gu1, Lei Chen2, Xiao Peng2, Bing Hu3, Hong-Mei An4.
Abstract
BACKGROUND: Shanzhuyu (the dried mature sarcocarp of Cornus officinalis Sieb. et Zucc., DMSCO) is a Chinese herb that can be used for the treatment of Alzheimer's disease (AD), but its mechanism remains unknown. The present study aimed to investigate the active ingredients and effective mechanisms of DMSCO for the treatment of AD based on a network pharmacology approach.Entities:
Keywords: Alzheimer’s disease; Chinese herb; Cornus officinalis Sieb. et Zucc.; Network pharmacology
Year: 2020 PMID: 32450873 PMCID: PMC7249309 DOI: 10.1186/s12906-020-02951-2
Source DB: PubMed Journal: BMC Complement Med Ther ISSN: 2662-7671
The characteristics of active compounds in DMSCO
| Compounds | Molecular formula | Molecular weight | OB (%) | DL |
|---|---|---|---|---|
| Ursolic acid | C30H48O3 | 456.78 | 16.77 | 0.75 |
| Beta-sitosterol | C29H50O | 414.79 | 36.91 | 0.75 |
| Stigmasterol | C29H48O | 412.77 | 43.83 | 0.76 |
| Retinol | C20H30O | 286.5 | 19.53 | 0.16 |
| Tetrahydroalstonine | C21H24N2O3 | 352.47 | 32.42 | 0.81 |
| Safrole | C10H10O2 | 162.2 | 45.34 | 0.05 |
| Methyleugenol | C11H14O2 | 178.25 | 73.36 | 0.04 |
| Oleanolic acid | C30H48O3 | 456.78 | 29.02 | 0.76 |
| Elemicin | C12H16O3 | 208.28 | 21.94 | 0.06 |
| Anethole | C10H12O | 148.22 | 32.49 | 0.03 |
| Sitosterol | C29H50O | 414.79 | 36.91 | 0.75 |
| Poriferast-5-en-3beta-ol | C29H50O | 414.79 | 36.91 | 0.75 |
OB Oral bioavailability, DL Drug-likeness
Fig. 1Potential targets of DMSCO compounds. a DMSCO Compound-target network was generated by Cytoscape 3.6.0 software. It consists of 239 nodes and 435 edges. Pink diamond nodes represent compounds in DMSCO, while lavender round nodes represent potential targets of DMSCO. b GO enrichment analysis for potential targets of DMSCO (Count number > 15). c KEGG pathway enrichment analysis for potential targets of DMSCO (Count number ≥ 12), q value refers to -log10(P value). d DMSCO compound-target-pathway (Count number > 20) network were generated by Cytoscape 3.6.0 software. Lavender eclipse nodes stand for potential targets of DMSCO, while yellow round rectangle nodes stand for active compounds in DMSCO and pink diamond nodes stand for the pathways whose count number > 20
Fig. 2AD-target network. AD-target network was generated by Cytoscape 3.6.0 software. Orange round nodes represent AD-related targets, and the size of nodes is proportional to degree centrality by topology analysis
Fig. 3Shared targets between AD targets and DMSCO targets. a Shared targets between AD targets and DMSCO targets were identified by Venny 2.1. b Network of the shared targets was generated by Cytoscape 3.6.0 software. Pink round nodes represent the shared targets, and the size of nodes is proportional to degree centrality by topology analysis. c DMSCO target-AD targets network was generated by Cytoscape 3.6.0 software. Yellow hexagon nodes stand for DMSCO targets, pink eclipse nodes represent AD-related targets, and light blue round rectangle nodes represent the shared targets of DMSCO and AD. The size of nodes is proportional to degree centrality by topology analysis
Fig. 4Network of key targets. Key targets were identified by central network evaluation and its network was generated by Cytoscape 3.6.0 software. Pink hexagon nodes stand for DMSCO targets, yellow round rectangle nodes represent AD-related targets, and lavender eclipse nodes represent the shared targets of DMSCO and AD. The size of nodes is proportional to degree centrality by topology analysis
Top 30 key targets of DMSCO acting on AD (degree ≥ 50)
| Targets | Official name | Degree | BC | CC |
|---|---|---|---|---|
| TP53 | Tumor protein p53 | 102 | 0.082 | 0.557 |
| MAPK1 | Mitogen-activated protein kinase 1 | 95 | 0.037 | 0.539 |
| AKT1 | AKT serine/threonine kinase 1 | 93 | 0.029 | 0.533 |
| VEGFA | Vascular endothelial growth factor A | 90 | 0.033 | 0.538 |
| INS | Insulin | 86 | 0.087 | 0.547 |
| IL6 | Interleukin 6 | 86 | 0.047 | 0.54 |
| STAT3 | Signal transducer and activator of transcription 3 | 85 | 0.017 | 0.519 |
| PIK3CA | Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Catalytic Subunit Alpha | 84 | 0.037 | 0.519 |
| MAPK8 | Mitogen-activated protein kinase 8 | 83 | 0.029 | 0.529 |
| MAPK3 | Mitogen-activated protein kinase 3 | 83 | 0.027 | 0.532 |
| SRC | SRC Proto-Oncogene, Non-Receptor Tyrosine Kinase | 81 | 0.027 | 0.513 |
| APP | Amyloid beta precursor protein | 77 | 0.072 | 0.514 |
| JUN | Jun proto-oncogene, AP-1 transcription factor subunit | 77 | 0.028 | 0.532 |
| EGFR | Epidermal growth factor receptor | 74 | 0.027 | 0.518 |
| HRAS | HRas Proto-Oncogene, GTPase | 70 | 0.014 | 0.503 |
| IGF1 | Insulin like growth factor 1 | 70 | 0.013 | 0.511 |
| CTNNB1 | Catenin beta 1 | 66 | 0.033 | 0.498 |
| TNF | Tumor necrosis factor | 66 | 0.011 | 0.505 |
| MYC | MYC proto-oncogene, bHLH transcription factor | 62 | 0.012 | 0.498 |
| MMP9 | Matrix metallopeptidase 9 | 59 | 0.024 | 0.498 |
| FGF2 | Fibroblast growth factor 2 | 58 | 0.01 | 0.495 |
| FOS | Fos proto-oncogene, AP-1 transcription factor subunit | 54 | 0.015 | 0.498 |
| CASP3 | Caspase 3 | 54 | 0.011 | 0.492 |
| CCND1 | Cyclin D1 | 54 | 0.004 | 0.475 |
| PTEN | Phosphatase and tensin homolog | 53 | 0.005 | 0.474 |
| RELA | RELA proto-oncogene, NF-kB subunit | 52 | 0.007 | 0.487 |
| HGF | Hepatocyte growth factor | 51 | 0.006 | 0.484 |
| BDNF | Brain derived neurotrophic factor | 50 | 0.021 | 0.498 |
| CDH1 | Cadherin 1 | 50 | 0.013 | 0.487 |
BC Betweenness centrality, CC Closeness centrality
Fig. 5GO and KEGG enrichment analysis of key targets. a GO enrichment analysis of key targets (count number > 10). b KEGG pathway enrichment analysis of key targets (count number ≥ 15), q value refers to -log10(P value)
Fig. 6Distribution of key targets in the most enriched pathways. a Distribution of key targets in the PI3K/AKT signaling pathway. b Distribution of key targets in the MAPK signaling pathway. The red rectangle stands for the key targets
DMSCO compounds and related key targets
| Compounds | Number of key targets | Targets |
|---|---|---|
| Ursolic acid | 17 | MAPK8, JUN, FGF2, FOS, RELA, PTGS2, CREB1, TP53, VEGFA, IL6, STAT3, CTNNB1, MMP9, CASP3, CCND1, IL1B, MTOR |
| Anethole | 7 | MAPK1, MAPK3, JUN, RELA, CDH1, AKT1, MMP9 |
| Beta-sitosterol | 5 | JUN, HSP90AA1, PTGS2, CASP3, AR |
| Stigmasterol | 3 | PTGS2, TNF, AR |
| Tetrahydroalstonine | 3 | HSP90AA1, PTGS2, AR |
| Retinol | 2 | MAPK1, JUN |
| Sitosterol | 2 | CASP3, AR |
| Poriferast-5-en-3beta-ol | 2 | CASP3, AR |
| Hydroxygenkwanin | 2 | HSP90AA1, PTGS2 |
| Safrole | 2 | PTGS2, CASP3 |
| Oleanolic acid | 1 | CASP3 |
| Methyleugenol | 1 | PTGS2 |
| Mandenol | 1 | PTGS2 |
| 3,5-Dihydroxybenzoic Acid | 1 | PTGS2 |
| Aristolone | 1 | PTGS2 |
| Verbenalin | 1 | PTGS2 |
| Elemicin | 1 | PTGS2 |
| Cornudentanone | 1 | PTGS2 |
| 2,6,10,14,18-pentamethylicosa-2,6,10,14,18-pentaene | 1 | PTGS2 |