| Literature DB >> 32437797 |
Venkatesh Pooladanda1, Sowjanya Thatikonda1, Chandraiah Godugu2.
Abstract
The ongoing wreaking global outbreak of the novel human beta coronavirus (CoV) pathogen was presumed to be from a seafood wholesale market in Wuhan, China, belongs to the Coronaviridae family in the Nidovirales order. The virus is highly contagious with potential human-human transmission which was named as the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), has spread across six continents and emerged as a global pandemic in short span with alarming levels of spread and severity. This virus associated symptoms and infectious respiratory illness is designated as coronavirus disease 19 (COVID-19). The SARS-CoV-2 possesses enveloped club-like spike protein projections with positive-sense large RNA genome and has a unique replication strategy. This virus was believed to have zoonotic origin with genetical identity to bat and pangolin CoV. In the current review, we introduce a general overview about the human CoVs and the associated diseases, the origin, structure, replication and key clinical events that occur in the COVID-19 pathogenicity. Furthermore, we focused on possible therapeutic options such as repurposing drugs including antimalarials, antivirals, antiparasitic drugs, and anti-HIV drugs, as well as monoclonal antibodies, vaccines as potential treatment options. Also we have summarized the latest research progress on the usage of stem cell therapy, human convalescent serum, interferon's, in the treatment of COVID-19.Entities:
Keywords: COVID-19; Repurposing drugs; SARS-CoV-2; Spike proteins; Zoonotic origin
Mesh:
Year: 2020 PMID: 32437797 PMCID: PMC7207108 DOI: 10.1016/j.lfs.2020.117765
Source DB: PubMed Journal: Life Sci ISSN: 0024-3205 Impact factor: 5.037
Different human CoVs and their symptoms.
| S. no | CoV Strain | Types | Symptoms associated with CoVs | Year | References |
|---|---|---|---|---|---|
| 1 | Human CoV OC43 | Beta | Fever, cough upper respiratory tract infections and fatal encephalitis | 1960 | [ |
| 2 | Human CoV HKU1 | Beta | Respiratory tract illness, pneumonia and flu-like symptoms | 2005 | [ |
| 3 | Human CoV 229E | Alpha | Common cold | 1960 | [ |
| 4 | Human CoV NL63 | Alpha | Bronchiolitis and pneumonia | 2004 | [ |
| 5 | Human SARS-CoV | Beta | Respiratory illness, shortness of breath, fever, chills, malaise and dry cough | 2003 | [ |
| 6 | Human MERS-CoV | Beta | Fever, chills, cough, pneumonia, shortness of breath, and GIT symptoms includes diarrhea | 2012 | [ |
| 7 | COVID-19 (SARS-CoV-2) | Beta | Flu-like symptoms, nausea, respiratory illness, pneumonia, shortness of breath and diarrhea | 2019 | [ |
Fig. 1Structure of human SARS-CoV-2.
Fig. 2Genome of SARS CoV-2. The virion contains a single positive-sense RNA genome with a total of ~30,000 nucleotides (nt). The genome includes a 5′-cap, 5′-untranslated region (UTR), a large number of transcripts encoding 10 open reading frames(ORFs), ORFs with fusion, deletion, and/or frameshift and 3′-UTR, the essential genes that make complete viral genome from 5′ to 3′ are as follows 1) ORF1ab that encodes replicase polyprotein 1a and 1b, the ORFs 2–10 encodes viral structural proteins which include spike (S), envelope (E), membrane (M), nucleocapsid (N) and other accessory proteins. The ORF1ab gene constitutes a total of 16 non-structural proteins (NSPs1–16) within the pp1ab gene.
Fig. 3The life cycle of SARS-CoV-2 in human host cells; begins its life cycle when spike protein binds to the angiotensin converting enzyme 2 (ACE-2) present on the outer surface of the cells in lungs, arteries, heart, kidney, and intestines. SARS-CoV-2 also enters the cells via pH dependent endocytosis. The newly formed viral particles will be transported outside by exocytosis.
Important findings on the origin of SARS-CoV-2.
| S. no | SARS-CoV-2 | Findings | Reference |
|---|---|---|---|
| 1 | Higher sequence identity between SARS-CoV-2 and RaTG13 | SARS-CoV-2 from BAL fluid represented 96.2% sequence similarity between SARS-CoV-2 and bat RaTG13. As per the accumulating evidence, bats could be the closest relative. Also, this study further confirms SARS-CoV-2 spike protein utilizes ACE2 receptor to enter the cells. | [ |
| 2 | Pangolin-CoV is identical to SARS-CoV-2 at the whole-genome level | Zhang et al. has reported that Pangolin-CoV exhibited 91.02% similarity to SARS-CoV-2. Where, the S1 spike subunit of Pangolin-CoV is exhibited much more similarity to SARS-CoV-2 than RaTG13. This data suggest that there are five key amino acid residues involved in binding with ACE2 receptors, which are entirely consistent between Pangolin-CoV and SARS-CoV-2. Also, this data further tells that some of the Pangolin-CoV genes depicted higher amino acid sequence identity to SARS-CoV-2 genes than to RaTG13 genes include ORF1b (73.4%/72.8%), ORF7a (96.9%/93.6%), and ORF10 (97.3%/94.6%) as well as the spike protein (97.5%/95.4%). | [ |
| 3 | SARS-CoV-2 might be a recombinant virus, with its genome evolved from Yunnan bat virus–like SARSr-CoVs and its RBD region acquired from pangolin virus-like SARSr-CoVs. | Lau et al. evidences that SARS-CoV-2 genomes exhibited different percentage genome identities such as 96.1% of SARSr-Ra-BatCoV-RaTG13, 87.8% of SARSr-Rp-BatCoV-ZC45, 87.6% of SARSr-Rp-BatCoV-ZXC21, and 85.3% of pangolin-SARSr CoV/P4L/Guangxi/2017. Additionally, these findings suggest that SARS-CoV-2 showed high amino acid sequence identities with that of SARSr-Ra-BatCoV RaTG13, except the receptor RBD region while RBD is closest to that of pangolin-SARSr-CoV/MP789/Guangdong/2019 infers that SARS-CoV-2 might be a recombinant virus. | [ |
| 4 | SARS-CoV-2 was likely constructed via laboratory recombination | James Lyons-Weiler claimed that SARS-CoV-2 having a unique sequence (1378 bp), which is located in the middle of its spike glycoprotein gene that had no similarity with other coronaviruses. Furthermore, this report also claims that this sequence was much similar to that of a common expression vector named pShuttle-SN commonly used in research. | [ |
| 5 | SARS-CoV-2 is not a laboratory origin | Hao et al. opposed the above mentioned James Lyons-Weiler's conclusion and claimed that sequence (1378 bp) from SARS-CoV-2 was also found in other coronavirus and which exists as naturally. The vector system pShuttle-SN was built in year of 2005 as an expression plasmid carrying a fragment sequence of spike gene from SARS-CoV, which caused the similarity match between plasmid and the SARS-CoV-2 spike gene sequence. | [ |
| 6 | SARS-CoV-2 is not a purposefully manipulated virus or laboratory construct. | Andersen et al. claims that SARS-CoV-2 spike protein has six RBD amino acids that are critical for binding to human or human-like ACE2, is different from SARS-CoV, as a reason, the virus might be the most likely the result of natural selection. | [ |
List of antibiotics, which have the antiviral activity.
| S. no. | Antibiotic | Mode of action | Viruses get affected | Ref |
|---|---|---|---|---|
| 1. | Distamycin A | The reduction of DNA-dependent RNA synthesis | Vaccinia, herpes simplex, herpes zoster, myxoma, and adenoviruses | [ |
| 2. | Netropsin | Inhibition of DNA-dependent DNA- and RNA syntheses | Vaccinia and Rauscher virus | [ |
| 3. | Ehrlichin | Suppressing the formation of viral hemagglutinin | Influenza B virus | [ |
| 4. | Teicoplanin | Inhibits the cathepsin L in the Late Endosome/Lysosome and suppress the viral entry | Ebola, MERS-CoV, and SARS-CoV viruses | [ |
| 5. | Rifampicin | Inhibition of late stage viral protein synthesis, virion assembly and also suppresses the de novo synthesized viral polymerase. | Poxviruses and vaccinia virus | [ |
| 6. | Doxycycline | Inhibits the viral replication | Chikungunya virus | [ |
Antiviral drugs which are under the clinical trials for treating SARS-CoV-2 viral infections.
| S. no. | Antiviral drug | Nature of the intervention | Clinical trials |
|---|---|---|---|
| 1. | Remdesivir (RDV; GS-5734) | Class of nucleotide analogues and developed for Ebola virus and Marburg virus infections | Phase 3 ( |
| 2. | Lopinavir/Ritonavir | Protease inhibitors used in HIV/AIDS | Phase 3 ( |
| 3. | Abidol hydrochloride (Umifenovir) | It shows the virucidal effects on influenza virus | Phase 4 ( |
| 4. | ASC09F + Oseltamivir | Antiviral drugs | Phase 3 ( |
| Ritonavir + Oseltamivir | |||
| Oseltamivir | |||
| 5. | Combination of Oseltamivir, Favipiravir, and Hydroxychloroquine | Protease inhibitors used as antiviral drugs | Phase 3 ( |
| 6. | Ganovo + Ritonavir ± Interferon nebulization | Protease inhibitors used in hepatitis C | Phase 4 ( |
| 7. | Camostat | It is a serine protease inhibitor | Phase 1/Phase 2 ( |
| 8. | Darunavir and Cobicistat | Protease inhibitor and CYP3A inhibitor, respectively used in HIV/AIDS | Phase 3 ( |
Monoclonal antibodies under the clinical trials.
| S. no. | Intervention/treatment | Nature of the intervention | Clinical trials |
|---|---|---|---|
| 1. | Emapalumab | IL-6 inhibitor used for RA | Phase 2/Phase 3 ( |
| Anakinra | Anti-interferon-gamma antibody used for the treatment of hemophagocytic lymphohistiocytosis | ||
| 2. | Siltuximab | IL-6 inhibitor used for cancer therapy | |
| 3. | Tocilizumab | IL-6 inhibitor is used to treat rheumatoid arthritis | Phase 2 ( |
| 4. | Sarilumab | Monoclonal antibody against IL-6R used in RA | Phase 2 ( |
| 5. | PD-1 blocking antibody | It Inhibits the T cell depletion in sepsis patients | Phase 2 ( |
| 6. | Bevacizumab | It is VEGR inhibitor and used to treat cancers | ( |
| 7. | Tocilizumab | IL-6R inhibitor is used treat RA | Phase 3 ( |
| 8. | CD24Fc | Innate checkpoint against the inflammatory response and immunomodulator | Phase 3 ( |
| 9. | Recombinant human interferon Alpha-1b | Immunomodulator | Phase 3 ( |
| Thymosin alpha 1 | Immunomodulator | ||
| 10. | Recombinant human interferon α1β | Antiviral activity | Early Phase 1 ( |
| 11. | Meplazumab | Humanized anti-CD147 antibody | Phase 1/Phase 2 ( |
| 12. | Intravenous immunoglobulin therapy | Activates innate and adaptive immunity | Phase 2/Phase 3 ( |
Antiviral and immune-modulating natural products and dietary supplements.
| S. no. | Natural product/dietary supplement | Mechanism | Viruses evaluated | Reference |
|---|---|---|---|---|
| 1. | Garlic ( | Inhibits the viral adsorption or penetration | Human rhinovirus-2, vaccinia virus, HSV-1, HSV-2, parainfluenza viru-3, and vesicular stomatitis virus | [ |
| 2. | Fresh ginger ( | Suppresses viral attachment and internalization | Human respiratory syncytial virus | [ |
| 3. | Cinnamon ( | Inhibits the viral replication | H7N3 influenza A Virus | [ |
| 4. | Tulsi ( | Shows the virucidal activity | H9N2 virus | [ |
| 5. | Ginseng ( | Inhibits the viral replication | SARS-CoV | [ |
| 6. | Glycyrrhizin (Liquorice roots; | Induces the nitric oxide synthase and produces the nitrosative stress in macrophages and exhibit the virucidal activity | SARS-CoV, Japanese encephalitis virus, HIV-1 and chronic hepatitis C virus | [ |
| 7. | Theaflavin-3,3′-digallate (TF3) (Black tea) | Inhibits the 3C-like protease (3CL(Pro)) and suppresses the viral replication | SARS-CoV | [ |
| 8. | Resveratrol | Suppresses the viral replication | MERS-CoV | [ |
| 9. | Welsh onion ( | Improves the host-immune system | Influenza A | [ |
| 10. | Vitamin D | Immunomodulator | Influenza virus | [ |
| 11. | Zinc | Inhibits the RNA polymerase activity and suppress the viral replication | SARS-CoV and equine arteritis virus (EAV) | [ |
| 12. | Baicalein ( | Exhibits virucidal activity and suppresses the viral adsorption and replication | Dengue virus | [ |
| 13. | Raoulic ( | Broad spectrum antiviral agent | Picornaviruses | [ |
| 14. | Ladanein ( | Suppresses viral entry | Hepatitis C virus | [ |
Vaccines under the clinical trials.
| S. no. | Vaccine | Clinical trials |
|---|---|---|
| 1. | LV-SMENP-DC vaccine and antigen-specific CTLs | Phase 1/Phase 2 ( |
| 2. | Pathogen-specific artificial antigen presenting cells (aAPC) | Phase 1 ( |
| 3. | mRNA-1273 vaccine | Phase 1 ( |
| 4. | ChAdOx1 nCoV-19 vaccine | Phase 1/Phase 2 ( |
| 5. | Recombinant novel CoV vaccine (adenovirus type 5 vector) | Phase 1 ( |
| 6. | Bacillus Calmette–Guérin (BCG) vaccine | Phase 1 (EudraCT: 2020-000919-69) |
List of stem cell research works on SARS-CoV-2 therapy.
| S. no. | Stem cells | Mechanism | Clinical trials |
|---|---|---|---|
| 1. | Wharton's Jelly-mesenchymal stem cells (WJ-MSCs) | It involves in immunomodulatory properties and maintains both innate and adaptive immune responses. | Phase 1 ( |
| 2. | Mesenchymal stem cells | Protects against SARS-CoV-2 induced organ failure | Phase 1 ( |
| 3. | Stem cell educator-treated mononuclear cells apheresis | It is used to reverse the autoimmune response in Type 1 diabetes, Alopecia Areata | Phase 2 ( |
| 4. | Umbilical cord (UC)-derived mesenchymal stem cells (MSCs) | Protects against organ failure | Phase 2 ( |
| 5. | MSCs-derived exosomes | Shows anti-inflammatory properties and inhibit organ failure | Phase 1 ( |
| 6. | NestCell® mesenchymal stem cells | Inhibits the cytokine storm | Phase 1 ( |
| 7. | Dental pulp mesenchymal stem cells | Suppress the inflammatory mediated signaling | Early Phase 1 ( |