| Literature DB >> 32431916 |
Nives Politeo1, Mateja Pisačić2, Marijana Đaković2, Vesna Sokol1, Boris-Marko Kukovec1.
Abstract
A 6-chloro-nicotinate (Entities:
Keywords: 4,4′-bipyridine; 6-chloronicotinic acid; coordination polymer; crystal structure; hydrogen-bond motif; nickel(II)
Year: 2020 PMID: 32431916 PMCID: PMC7199272 DOI: 10.1107/S2056989020004193
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of 1, comprising a {[Ni(4,4′-bpy)(H2O)4]2+} cation, 6-chloronicotinate anion and water molecules of crystallization. The atomic numbering scheme of the asymmetric unit is shown and displacement ellipsoids are drawn at the 40% probability level.
Figure 2The infinite one-dimensional polymeric chain of {[Ni(4,4′-bpy)(H2O)4]2+} cations in 1, extending along the b-axis direction.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H11⋯O3i | 0.81 (1) | 1.95 (1) | 2.756 (2) | 175 (2) |
| O1—H12⋯O5 | 0.82 (1) | 1.90 (1) | 2.715 (2) | 175 (2) |
| O2—H21⋯N2ii | 0.81 (1) | 2.08 (1) | 2.885 (2) | 172 (2) |
| O2—H22⋯O4 | 0.81 (1) | 1.96 (1) | 2.757 (2) | 169 (2) |
| O5—H51⋯O3iii | 0.82 (1) | 1.96 (1) | 2.776 (2) | 172 (3) |
| O5—H52⋯O6iv | 0.82 (1) | 2.01 (1) | 2.790 (3) | 160 (3) |
| O6—H61⋯O4 | 0.82 (1) | 1.94 (1) | 2.753 (2) | 177 (3) |
| O6—H62⋯O4v | 0.81 (1) | 2.23 (1) | 3.035 (3) | 174 (3) |
| C4—H4⋯O6ii | 0.93 | 2.40 | 3.288 (3) | 160 |
| C9—H9⋯O5vi | 0.93 | 2.53 | 3.447 (3) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 3A fragment of the infinite hydrogen-bonded network of 1 viewed along the b-axis direction. The polymeric chains of {[Ni(4,4′-bpy)(H2O)4]2+} (represented as monomeric molecules in this projection), 6-chloronicotinate anions and water molecules of crystallization are connected by O—H⋯O and O—H⋯N hydrogen bonds (represented by dotted lines) within the hydrogen-bonded framework.
Figure 4The representative hydrogen-bonded ring motifs (shown by dotted lines) found within the hydrogen-bonded framework of 1, viz. the tetrameric (8) and (10) motifs, a dimeric (8) motif and a pentameric (16) motif. The polymeric chains of {[Ni(4,4′-bpy)(H2O)4]2+} are represented as momomeric molecules and shown in red, and various symmetry-related 6-chloronicotinate anions are shown in brown, green, blue and pink (see text).
Figure 5Experimental (bottom) and calculated (top) PXRD traces for 1.
Experimental details
| Crystal data | |
| Chemical formula | {[Ni(C10H8N2)(H2O)4](C6H3ClNO2)2·4H2O} |
|
| 672.11 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 10.7997 (3), 11.2319 (2), 12.0225 (3) |
| β (°) | 95.184 (2) |
|
| 1452.38 (6) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.92 |
| Crystal size (mm) | 0.24 × 0.18 × 0.16 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur2 diffractometer with Sapphire 3 CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.927, 1.000 |
| No. of measured, independent and observed [ | 11778, 2541, 2144 |
|
| 0.025 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.029, 0.074, 1.07 |
| No. of reflections | 2541 |
| No. of parameters | 211 |
| No. of restraints | 12 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.23, −0.23 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸) and Mercury (Macrae et al., 2020 ▸).
| [Ni(C10H8N2)(H2O)4](C6H3ClNO2)2·4H2O | |
| Monoclinic, | Mo |
| Cell parameters from 6296 reflections | |
| θ = 4.4–32.2° | |
| µ = 0.92 mm−1 | |
| β = 95.184 (2)° | |
| Prism, light-green | |
| 0.24 × 0.18 × 0.16 mm |
| Oxford Diffraction Xcalibur2 diffractometer with Sapphire 3 CCD detector | 2144 reflections with |
| ω–scan | |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018) | θmax = 25.0°, θmin = 4.2° |
| 11778 measured reflections | |
| 2541 independent reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2541 reflections | Δρmax = 0.23 e Å−3 |
| 211 parameters | Δρmin = −0.23 e Å−3 |
| 12 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ni1 | 0.500000 | 0.500000 | 0.500000 | 0.02724 (12) | |
| Cl1 | 0.14959 (7) | −0.20644 (6) | 0.64253 (6) | 0.0683 (2) | |
| N1 | 0.49579 (14) | 0.68437 (13) | 0.49747 (12) | 0.0302 (4) | |
| N2 | 0.14853 (18) | 0.02547 (18) | 0.65643 (15) | 0.0489 (5) | |
| O1 | 0.63069 (14) | 0.50565 (11) | 0.63625 (12) | 0.0365 (3) | |
| H11 | 0.6796 (16) | 0.5604 (14) | 0.6359 (19) | 0.044* | |
| H12 | 0.6766 (17) | 0.4477 (13) | 0.6434 (18) | 0.044* | |
| O2 | 0.35666 (14) | 0.50182 (12) | 0.60512 (12) | 0.0381 (3) | |
| H21 | 0.363 (2) | 0.5067 (18) | 0.6729 (8) | 0.046* | |
| H22 | 0.2918 (13) | 0.4706 (19) | 0.5828 (17) | 0.046* | |
| O3 | 0.21575 (15) | 0.29848 (13) | 0.36561 (13) | 0.0513 (4) | |
| O4 | 0.15477 (15) | 0.36711 (14) | 0.52437 (14) | 0.0577 (5) | |
| O5 | 0.77684 (18) | 0.31004 (15) | 0.67043 (15) | 0.0578 (5) | |
| H51 | 0.765 (2) | 0.280 (2) | 0.7309 (13) | 0.069* | |
| H52 | 0.8451 (14) | 0.341 (2) | 0.670 (2) | 0.069* | |
| O6 | −0.02489 (19) | 0.4641 (2) | 0.64545 (15) | 0.0691 (5) | |
| H61 | 0.027 (2) | 0.434 (2) | 0.608 (2) | 0.083* | |
| H62 | −0.063 (2) | 0.511 (2) | 0.604 (2) | 0.083* | |
| C1 | 0.5043 (2) | 0.74728 (16) | 0.40446 (16) | 0.0366 (5) | |
| H1 | 0.509493 | 0.706173 | 0.337893 | 0.044* | |
| C2 | 0.5057 (2) | 0.86964 (16) | 0.40158 (16) | 0.0368 (5) | |
| H2 | 0.511821 | 0.909144 | 0.334314 | 0.044* | |
| C3 | 0.49798 (17) | 0.93401 (15) | 0.49898 (15) | 0.0280 (4) | |
| C4 | 0.48697 (19) | 0.86865 (16) | 0.59518 (16) | 0.0361 (5) | |
| H4 | 0.480202 | 0.907506 | 0.662667 | 0.043* | |
| C5 | 0.48605 (19) | 0.74622 (15) | 0.59102 (16) | 0.0359 (5) | |
| H5 | 0.478228 | 0.704445 | 0.656807 | 0.043* | |
| C6 | 0.1538 (2) | 0.1347 (2) | 0.61298 (18) | 0.0456 (5) | |
| H6 | 0.147862 | 0.199385 | 0.660541 | 0.055* | |
| C7 | 0.16748 (18) | 0.15756 (17) | 0.50216 (16) | 0.0356 (5) | |
| C8 | 0.1733 (2) | 0.06049 (18) | 0.43203 (17) | 0.0414 (5) | |
| H8 | 0.180909 | 0.072105 | 0.356359 | 0.050* | |
| C9 | 0.1679 (2) | −0.05304 (19) | 0.47386 (18) | 0.0439 (5) | |
| H9 | 0.172347 | −0.119476 | 0.428227 | 0.053* | |
| C10 | 0.1557 (2) | −0.06397 (19) | 0.58621 (18) | 0.0429 (5) | |
| C11 | 0.17917 (18) | 0.28366 (18) | 0.46017 (19) | 0.0419 (5) |
| Ni1 | 0.0411 (2) | 0.01267 (17) | 0.02797 (19) | −0.00048 (13) | 0.00315 (14) | 0.00009 (12) |
| Cl1 | 0.0830 (5) | 0.0554 (4) | 0.0687 (4) | 0.0079 (3) | 0.0195 (4) | 0.0253 (3) |
| N1 | 0.0420 (9) | 0.0166 (7) | 0.0319 (8) | 0.0007 (6) | 0.0030 (7) | −0.0009 (6) |
| N2 | 0.0538 (12) | 0.0589 (12) | 0.0347 (10) | −0.0021 (9) | 0.0074 (9) | 0.0018 (9) |
| O1 | 0.0476 (9) | 0.0236 (7) | 0.0370 (8) | −0.0015 (6) | −0.0024 (7) | 0.0019 (6) |
| O2 | 0.0462 (9) | 0.0351 (8) | 0.0340 (7) | −0.0063 (6) | 0.0083 (7) | −0.0039 (6) |
| O3 | 0.0695 (11) | 0.0353 (8) | 0.0500 (10) | −0.0096 (7) | 0.0104 (8) | −0.0005 (7) |
| O4 | 0.0557 (10) | 0.0410 (9) | 0.0795 (12) | −0.0068 (7) | 0.0228 (9) | −0.0210 (8) |
| O5 | 0.0731 (13) | 0.0458 (10) | 0.0537 (10) | 0.0071 (8) | 0.0020 (10) | 0.0065 (8) |
| O6 | 0.0751 (14) | 0.0873 (14) | 0.0481 (10) | 0.0270 (10) | 0.0226 (10) | 0.0193 (9) |
| C1 | 0.0597 (14) | 0.0203 (9) | 0.0305 (10) | −0.0001 (8) | 0.0075 (10) | −0.0023 (8) |
| C2 | 0.0601 (14) | 0.0186 (9) | 0.0325 (11) | −0.0011 (8) | 0.0082 (10) | 0.0023 (8) |
| C3 | 0.0325 (10) | 0.0169 (9) | 0.0346 (10) | 0.0011 (7) | 0.0023 (8) | 0.0008 (7) |
| C4 | 0.0578 (13) | 0.0201 (9) | 0.0308 (10) | 0.0006 (8) | 0.0061 (9) | −0.0036 (8) |
| C5 | 0.0570 (13) | 0.0190 (9) | 0.0321 (11) | −0.0002 (8) | 0.0057 (9) | 0.0042 (8) |
| C6 | 0.0457 (13) | 0.0504 (14) | 0.0410 (12) | −0.0061 (10) | 0.0055 (10) | −0.0107 (10) |
| C7 | 0.0318 (11) | 0.0374 (11) | 0.0376 (11) | −0.0035 (8) | 0.0039 (9) | −0.0055 (9) |
| C8 | 0.0526 (14) | 0.0384 (12) | 0.0340 (11) | −0.0028 (10) | 0.0081 (10) | −0.0004 (9) |
| C9 | 0.0543 (14) | 0.0353 (11) | 0.0432 (13) | 0.0000 (10) | 0.0094 (11) | −0.0036 (10) |
| C10 | 0.0408 (13) | 0.0447 (13) | 0.0440 (13) | 0.0027 (9) | 0.0080 (10) | 0.0089 (10) |
| C11 | 0.0326 (12) | 0.0358 (11) | 0.0570 (14) | −0.0041 (9) | 0.0032 (10) | −0.0103 (10) |
| Ni1—O1i | 2.0643 (15) | O6—H61 | 0.818 (10) |
| Ni1—O1 | 2.0643 (15) | O6—H62 | 0.813 (10) |
| Ni1—N1i | 2.0715 (14) | C1—C2 | 1.375 (3) |
| Ni1—N1 | 2.0715 (14) | C1—H1 | 0.9300 |
| Ni1—O2i | 2.0850 (13) | C2—C3 | 1.385 (2) |
| Ni1—O2 | 2.0850 (13) | C2—H2 | 0.9300 |
| Cl1—C10 | 1.741 (2) | C3—C4 | 1.384 (2) |
| N1—C1 | 1.333 (2) | C3—C3ii | 1.483 (3) |
| N1—C5 | 1.334 (2) | C4—C5 | 1.376 (3) |
| N2—C10 | 1.319 (3) | C4—H4 | 0.9300 |
| N2—C6 | 1.337 (3) | C5—H5 | 0.9300 |
| O1—H11 | 0.811 (9) | C6—C7 | 1.378 (3) |
| O1—H12 | 0.818 (9) | C6—H6 | 0.9300 |
| O2—H21 | 0.813 (9) | C7—C8 | 1.383 (3) |
| O2—H22 | 0.807 (10) | C7—C11 | 1.513 (3) |
| O3—C11 | 1.248 (2) | C8—C9 | 1.374 (3) |
| O4—C11 | 1.257 (2) | C8—H8 | 0.9300 |
| O5—H51 | 0.822 (10) | C9—C10 | 1.375 (3) |
| O5—H52 | 0.815 (10) | C9—H9 | 0.9300 |
| O1i—Ni1—O1 | 180.0 | C1—C2—C3 | 119.92 (17) |
| O1i—Ni1—N1i | 89.62 (6) | C1—C2—H2 | 120.0 |
| O1—Ni1—N1i | 90.37 (6) | C3—C2—H2 | 120.0 |
| O1i—Ni1—N1 | 90.38 (6) | C4—C3—C2 | 116.48 (16) |
| O1—Ni1—N1 | 89.62 (6) | C4—C3—C3ii | 121.39 (19) |
| N1i—Ni1—N1 | 180.0 | C2—C3—C3ii | 122.13 (19) |
| O1i—Ni1—O2i | 90.61 (6) | C5—C4—C3 | 120.04 (17) |
| O1—Ni1—O2i | 89.39 (6) | C5—C4—H4 | 120.0 |
| N1i—Ni1—O2i | 89.00 (5) | C3—C4—H4 | 120.0 |
| N1—Ni1—O2i | 91.00 (5) | N1—C5—C4 | 123.37 (17) |
| O1i—Ni1—O2 | 89.39 (6) | N1—C5—H5 | 118.3 |
| O1—Ni1—O2 | 90.61 (6) | C4—C5—H5 | 118.3 |
| N1i—Ni1—O2 | 91.00 (5) | N2—C6—C7 | 124.1 (2) |
| N1—Ni1—O2 | 89.00 (5) | N2—C6—H6 | 117.9 |
| O2i—Ni1—O2 | 180.0 | C7—C6—H6 | 117.9 |
| C1—N1—C5 | 116.61 (16) | C6—C7—C8 | 117.23 (19) |
| C1—N1—Ni1 | 122.63 (12) | C6—C7—C11 | 121.10 (18) |
| C5—N1—Ni1 | 120.76 (12) | C8—C7—C11 | 121.65 (18) |
| C10—N2—C6 | 116.23 (18) | C9—C8—C7 | 120.18 (19) |
| Ni1—O1—H11 | 114.7 (16) | C9—C8—H8 | 119.9 |
| Ni1—O1—H12 | 115.0 (16) | C7—C8—H8 | 119.9 |
| H11—O1—H12 | 102 (2) | C8—C9—C10 | 117.0 (2) |
| Ni1—O2—H21 | 127.6 (17) | C8—C9—H9 | 121.5 |
| Ni1—O2—H22 | 117.6 (16) | C10—C9—H9 | 121.5 |
| H21—O2—H22 | 111 (2) | N2—C10—C9 | 125.3 (2) |
| H51—O5—H52 | 113 (3) | N2—C10—Cl1 | 116.40 (16) |
| H61—O6—H62 | 105 (3) | C9—C10—Cl1 | 118.34 (17) |
| N1—C1—C2 | 123.56 (17) | O3—C11—O4 | 124.1 (2) |
| N1—C1—H1 | 118.2 | O3—C11—C7 | 118.15 (17) |
| C2—C1—H1 | 118.2 | O4—C11—C7 | 117.69 (19) |
| C5—N1—C1—C2 | 1.2 (3) | N2—C6—C7—C11 | −176.9 (2) |
| Ni1—N1—C1—C2 | −177.83 (16) | C6—C7—C8—C9 | −1.2 (3) |
| N1—C1—C2—C3 | 0.0 (3) | C11—C7—C8—C9 | 177.10 (19) |
| C1—C2—C3—C4 | −1.1 (3) | C7—C8—C9—C10 | 0.5 (3) |
| C1—C2—C3—C3ii | 178.6 (2) | C6—N2—C10—C9 | 0.0 (3) |
| C2—C3—C4—C5 | 1.0 (3) | C6—N2—C10—Cl1 | 179.70 (16) |
| C3ii—C3—C4—C5 | −178.7 (2) | C8—C9—C10—N2 | 0.1 (3) |
| C1—N1—C5—C4 | −1.3 (3) | C8—C9—C10—Cl1 | −179.55 (16) |
| Ni1—N1—C5—C4 | 177.75 (16) | C6—C7—C11—O3 | 166.0 (2) |
| C3—C4—C5—N1 | 0.2 (3) | C8—C7—C11—O3 | −12.3 (3) |
| C10—N2—C6—C7 | −0.8 (3) | C6—C7—C11—O4 | −12.0 (3) |
| N2—C6—C7—C8 | 1.4 (3) | C8—C7—C11—O4 | 169.7 (2) |
| H··· | ||||
| O1—H11···O3i | 0.81 (1) | 1.95 (1) | 2.756 (2) | 175 (2) |
| O1—H12···O5 | 0.82 (1) | 1.90 (1) | 2.715 (2) | 175 (2) |
| O2—H21···N2iii | 0.81 (1) | 2.08 (1) | 2.885 (2) | 172 (2) |
| O2—H22···O4 | 0.81 (1) | 1.96 (1) | 2.757 (2) | 169 (2) |
| O5—H51···O3iv | 0.82 (1) | 1.96 (1) | 2.776 (2) | 172 (3) |
| O5—H52···O6v | 0.82 (1) | 2.01 (1) | 2.790 (3) | 160 (3) |
| O6—H61···O4 | 0.82 (1) | 1.94 (1) | 2.753 (2) | 177 (3) |
| O6—H62···O4vi | 0.81 (1) | 2.23 (1) | 3.035 (3) | 174 (3) |
| C4—H4···O6iii | 0.93 | 2.40 | 3.288 (3) | 160 |
| C9—H9···O5vii | 0.93 | 2.53 | 3.447 (3) | 169 |